메뉴 건너뛰기




Volumn 311, Issue 1, 2011, Pages 29-37

Genome-wide combination profiling of DNA copy number and methylation for deciphering biomarkers in non-small cell lung cancer patients

Author keywords

Copy number change; DNA methylation; Genetic and epigenetic relationship; HOXA9; Non small cell lung cancer

Indexed keywords

ADULT; AGED; ARTICLE; AUTOSOME; CHROMOSOME 1; CHROMOSOME 12Q; CHROMOSOME 12Q24.33; CHROMOSOME 13Q; CHROMOSOME 13Q34; CHROMOSOME 1P21.1; CHROMOSOME 1Q31.1; CHROMOSOME 2; CHROMOSOME 2Q33.3; CHROMOSOME 2Q37.3; CHROMOSOME 3; CHROMOSOME 3P12.3; CHROMOSOME 3Q26.1; CHROMOSOME 3Q26.31; CHROMOSOME 3Q29; CHROMOSOME 4; CHROMOSOME 4Q35.2; CHROMOSOME 7P; CHROMOSOME 7P15.2; CLINICAL ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; COPY NUMBER VARIATION; DNA METHYLATION; DOWN REGULATION; FEMALE; GENE; HOXA11 GENE; HOXA9 GENE; HUMAN; HUMAN TISSUE; LUNG ADENOCARCINOMA; LUNG NON SMALL CELL CANCER; LUNG SQUAMOUS CELL CARCINOMA; MALE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION;

EID: 80052179100     PISSN: 03043835     EISSN: 18727980     Source Type: Journal    
DOI: 10.1016/j.canlet.2011.06.021     Document Type: Article
Times cited : (53)

References (43)
  • 3
    • 79551511484 scopus 로고    scopus 로고
    • Genomic medicine in non-small cell lung cancer: paving the path to personalized care
    • Sriram K.B., Larsen J.E., Yang I.A., Bowman R.V., Fong K.M. Genomic medicine in non-small cell lung cancer: paving the path to personalized care. Respirology 2011, 16:257-263.
    • (2011) Respirology , vol.16 , pp. 257-263
    • Sriram, K.B.1    Larsen, J.E.2    Yang, I.A.3    Bowman, R.V.4    Fong, K.M.5
  • 4
    • 56849133040 scopus 로고    scopus 로고
    • DNA methylation-based biomarkers for early detection of non-small cell lung cancer: an update
    • Anglim P.P., Alonzo T.A., Laird-Offringa I.A. DNA methylation-based biomarkers for early detection of non-small cell lung cancer: an update. Mol. Cancer 2008, 7:81.
    • (2008) Mol. Cancer , vol.7 , pp. 81
    • Anglim, P.P.1    Alonzo, T.A.2    Laird-Offringa, I.A.3
  • 5
    • 70349774795 scopus 로고    scopus 로고
    • RASSF1A, APC, ESR1, ABCB1 and HOXC9, but not p16INK4A, DAPK1, PTEN and MT1G genes were frequently methylated in the stage I non-small cell lung cancer in China
    • Lin Q., Geng J., Ma K., Yu J., Sun J., Shen Z., Bao G., Chen Y., Zhang H., He Y., Luo X., Feng X., Zhu J. RASSF1A, APC, ESR1, ABCB1 and HOXC9, but not p16INK4A, DAPK1, PTEN and MT1G genes were frequently methylated in the stage I non-small cell lung cancer in China. J. Cancer Res. Clin. Oncol. 2009, 135:1675-1684.
    • (2009) J. Cancer Res. Clin. Oncol. , vol.135 , pp. 1675-1684
    • Lin, Q.1    Geng, J.2    Ma, K.3    Yu, J.4    Sun, J.5    Shen, Z.6    Bao, G.7    Chen, Y.8    Zhang, H.9    He, Y.10    Luo, X.11    Feng, X.12    Zhu, J.13
  • 6
    • 57149102071 scopus 로고    scopus 로고
    • Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis
    • Ionita-Laza I., Rogers A.J., Lange C., Raby B.A., Lee C. Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis. Genomics 2009, 93:22-26.
    • (2009) Genomics , vol.93 , pp. 22-26
    • Ionita-Laza, I.1    Rogers, A.J.2    Lange, C.3    Raby, B.A.4    Lee, C.5
  • 14
    • 79952732654 scopus 로고    scopus 로고
    • MYC amplification as a prognostic marker of early-stage lung adenocarcinoma identified by whole genome copy number analysis
    • Iwakawa R., Kohno T., Kato M., Shiraishi K., Tsuta K., Noguchi M., Ogawa S., Yokota J. MYC amplification as a prognostic marker of early-stage lung adenocarcinoma identified by whole genome copy number analysis. Clin. Cancer Res. 2011, 17:1481-1489.
    • (2011) Clin. Cancer Res. , vol.17 , pp. 1481-1489
    • Iwakawa, R.1    Kohno, T.2    Kato, M.3    Shiraishi, K.4    Tsuta, K.5    Noguchi, M.6    Ogawa, S.7    Yokota, J.8
  • 15
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones P.A., Baylin S.B. The fundamental role of epigenetic events in cancer. Nat. Rev. Genet. 2002, 3:415-428.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 17
    • 63449136848 scopus 로고    scopus 로고
    • DNA methylation patterns in lung carcinomas
    • Pfeifer G.P., Rauch T.A. DNA methylation patterns in lung carcinomas. Semin. Cancer Biol. 2009, 19:181-187.
    • (2009) Semin. Cancer Biol. , vol.19 , pp. 181-187
    • Pfeifer, G.P.1    Rauch, T.A.2
  • 18
    • 0037068353 scopus 로고    scopus 로고
    • DNA methylation in cancer: too much, but also too little
    • Ehrlich M. DNA methylation in cancer: too much, but also too little. Oncogene 2002, 21:5400-5413.
    • (2002) Oncogene , vol.21 , pp. 5400-5413
    • Ehrlich, M.1
  • 19
    • 0242584454 scopus 로고    scopus 로고
    • Chromosomal instability and tumors promoted by DNA hypomethylation
    • Eden A., Gaudet F., Waghmare A., Jaenisch R. Chromosomal instability and tumors promoted by DNA hypomethylation. Science 2003, 300:455.
    • (2003) Science , vol.300 , pp. 455
    • Eden, A.1    Gaudet, F.2    Waghmare, A.3    Jaenisch, R.4
  • 20
  • 24
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B 1995, 57:289-300.
    • (1995) J. Roy. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 26
    • 24944575366 scopus 로고    scopus 로고
    • Tumorigenesis: the adaptation of mammalian cells to sustained stress environment by epigenetic alterations and succeeding matched mutations
    • Karpinets T.V., Foy B.D. Tumorigenesis: the adaptation of mammalian cells to sustained stress environment by epigenetic alterations and succeeding matched mutations. Carcinogenesis 2005, 26:1323-1334.
    • (2005) Carcinogenesis , vol.26 , pp. 1323-1334
    • Karpinets, T.V.1    Foy, B.D.2
  • 28
    • 34247221148 scopus 로고    scopus 로고
    • Ability of low-dose helical CT to distinguish between benign and malignant noncalcified lung nodules
    • Markowitz S.B., Miller A., Miller J., Manowitz A., Kieding S., Sider L., Morabia A. Ability of low-dose helical CT to distinguish between benign and malignant noncalcified lung nodules. Chest 2007, 131:1028-1034.
    • (2007) Chest , vol.131 , pp. 1028-1034
    • Markowitz, S.B.1    Miller, A.2    Miller, J.3    Manowitz, A.4    Kieding, S.5    Sider, L.6    Morabia, A.7
  • 29
    • 43949091796 scopus 로고    scopus 로고
    • Lung cancer epigenetics and genetics
    • Risch A., Plass C. Lung cancer epigenetics and genetics. Int. J. Cancer 2008, 123:1-7.
    • (2008) Int. J. Cancer , vol.123 , pp. 1-7
    • Risch, A.1    Plass, C.2
  • 31
    • 34248180714 scopus 로고    scopus 로고
    • Integrative genomic analysis of small-cell lung carcinoma reveals correlates of sensitivity to bcl-2 antagonists and uncovers novel chromosomal gains
    • Olejniczak E.T., Van Sant C., Anderson M.G., Wang G., Tahir S.K., Sauter G., Lesniewski R., Semizarov D. Integrative genomic analysis of small-cell lung carcinoma reveals correlates of sensitivity to bcl-2 antagonists and uncovers novel chromosomal gains. Mol. Cancer Res. 2007, 5:331-339.
    • (2007) Mol. Cancer Res. , vol.5 , pp. 331-339
    • Olejniczak, E.T.1    Van Sant, C.2    Anderson, M.G.3    Wang, G.4    Tahir, S.K.5    Sauter, G.6    Lesniewski, R.7    Semizarov, D.8
  • 32
    • 33845440685 scopus 로고    scopus 로고
    • Comparative genomic hybridization array analysis and real-time PCR reveals genomic copy number alteration for lung adenocarcinomas
    • Choi J.S., Zheng L.T., Ha E., Lim Y.J., Kim Y.H., Wang Y.P., Lim Y. Comparative genomic hybridization array analysis and real-time PCR reveals genomic copy number alteration for lung adenocarcinomas. Lung 2006, 184:355-362.
    • (2006) Lung , vol.184 , pp. 355-362
    • Choi, J.S.1    Zheng, L.T.2    Ha, E.3    Lim, Y.J.4    Kim, Y.H.5    Wang, Y.P.6    Lim, Y.7
  • 33
    • 37049020657 scopus 로고    scopus 로고
    • Genome-wide combination profiling of copy number and methylation offers an approach for deciphering misregulation and development in cancer cells
    • Park J.J., Kang J.K., Hong S., Ryu E.S., Kim J.I., Lee J.H., Seo J.S. Genome-wide combination profiling of copy number and methylation offers an approach for deciphering misregulation and development in cancer cells. Gene 2008, 407:139-147.
    • (2008) Gene , vol.407 , pp. 139-147
    • Park, J.J.1    Kang, J.K.2    Hong, S.3    Ryu, E.S.4    Kim, J.I.5    Lee, J.H.6    Seo, J.S.7
  • 35
    • 0022963679 scopus 로고
    • Homeotic genes and the homeobox
    • Gehring W.J., Hiromi Y. Homeotic genes and the homeobox. Annu. Rev. Genet. 1986, 20:147-173.
    • (1986) Annu. Rev. Genet. , vol.20 , pp. 147-173
    • Gehring, W.J.1    Hiromi, Y.2
  • 38
    • 0142103778 scopus 로고    scopus 로고
    • Hyperexpression of locus C genes in the HOX network is strongly associated in vivo with human bladder transitional cell carcinomas
    • Cantile M., Cindolo L., Napodano G., Altieri V., Cillo C. Hyperexpression of locus C genes in the HOX network is strongly associated in vivo with human bladder transitional cell carcinomas. Oncogene 2003, 22:6462-6468.
    • (2003) Oncogene , vol.22 , pp. 6462-6468
    • Cantile, M.1    Cindolo, L.2    Napodano, G.3    Altieri, V.4    Cillo, C.5
  • 40
    • 0037083275 scopus 로고    scopus 로고
    • Overexpression of the homeobox gene HOXC8 in human prostate cancer correlates with loss of tumor differentiation
    • Waltregny D., Alami Y., Clausse N., De Leval J., Castronovo V. Overexpression of the homeobox gene HOXC8 in human prostate cancer correlates with loss of tumor differentiation. Prostate 2002, 50:162-169.
    • (2002) Prostate , vol.50 , pp. 162-169
    • Waltregny, D.1    Alami, Y.2    Clausse, N.3    De Leval, J.4    Castronovo, V.5
  • 41
    • 34248361968 scopus 로고    scopus 로고
    • Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay
    • Rauch T., Wang Z., Zhang X., Zhong X., Wu X., Lau S.K., Kernstine K.H., Riggs A.D., Pfeifer G.P. Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay. Proc. Natl. Acad. Sci. USA 2007, 104:5527-5532.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 5527-5532
    • Rauch, T.1    Wang, Z.2    Zhang, X.3    Zhong, X.4    Wu, X.5    Lau, S.K.6    Kernstine, K.H.7    Riggs, A.D.8    Pfeifer, G.P.9
  • 42
    • 79954502589 scopus 로고    scopus 로고
    • Detection of HOXA9 gene methylation in tumor tissues and induced sputum samples from primary lung cancer patients
    • Hwang S.H., Kim K.U., Kim J.E., Kim H.H., Lee M.K., Lee C.H., Lee S.Y., Oh T., An S. Detection of HOXA9 gene methylation in tumor tissues and induced sputum samples from primary lung cancer patients. Clin. Chem. Lab. Med. 2011, 49:699-704.
    • (2011) Clin. Chem. Lab. Med. , vol.49 , pp. 699-704
    • Hwang, S.H.1    Kim, K.U.2    Kim, J.E.3    Kim, H.H.4    Lee, M.K.5    Lee, C.H.6    Lee, S.Y.7    Oh, T.8    An, S.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.