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Volumn 10, Issue 46, 2011, Pages 9387-9395

The application of polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) method in microbial screening

Author keywords

Bacteria; Bifidobacteria; Denaturing gradient gel electrophoresis (DGGE); Fungi; Lactobacillus; Microbial screening; Sourdoughs; Viili

Indexed keywords

BACTERIAL DNA; DNA 16S; DNA FRAGMENT;

EID: 80052165309     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: 10.5897/ajb10.2092     Document Type: Article
Times cited : (17)

References (31)
  • 2
    • 25144516786 scopus 로고    scopus 로고
    • Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group
    • Ast J, Dunlap P (2005). Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group. Environ. Microbiol., 7: 1641-1654.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1641-1654
    • Ast, J.1    Dunlap, P.2
  • 3
    • 34548615536 scopus 로고    scopus 로고
    • RNA-and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation
    • Bastias B, Anderson I, Xu Z, Cairney J (2007). RNA-and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biol. Biochem., 39: 3108-3114.
    • (2007) Soil Biol. Biochem. , vol.39 , pp. 3108-3114
    • Bastias, B.1    Anderson, I.2    Xu, Z.3    Cairney, J.4
  • 4
    • 0039470595 scopus 로고    scopus 로고
    • amicos y tecnol̈®gicos del metabolismo de cultivos puros y mixtos de levaduras y bacterias ̈¢cido l̈¢cticas en panificacï®n
    • amicos y tecnol̈®gicos del metabolismo de cultivos puros y mixtos de levaduras y bacterias ̈¢cido l̈¢cticas en panificacï®n. Food Sci. Technol. Int., 2: p. 349.
    • (1996) Food Sci. Technol. Int. , vol.2 , pp. 349
    • Collar, C.1
  • 5
    • 71449098853 scopus 로고    scopus 로고
    • Lactobacillus and Bifidobacterium Diversity in Horse Feces, Revealed by PCR-DGGE
    • Endo A, Futagawa-Endo Y, Dicks L (2009). Lactobacillus and Bifidobacterium Diversity in Horse Feces, Revealed by PCR-DGGE. Curr. Microbiol., 59: 651-655.
    • (2009) Curr. Microbiol. , vol.59 , pp. 651-655
    • Endo, A.1    Futagawa-Endo, Y.2    Dicks, L.3
  • 6
    • 0028316054 scopus 로고
    • Application of the random amplified polymorphic DNA using the polymerase chain reaction for efficient elimination of duplicate strains in microbial screening
    • Fujimori F, Okuda T (1994). Application of the random amplified polymorphic DNA using the polymerase chain reaction for efficient elimination of duplicate strains in microbial screening. J. Antibiot. 47: 173-182.
    • (1994) J. Antibiot. , vol.47 , pp. 173-182
    • Fujimori, F.1    Okuda, T.2
  • 7
    • 1942453431 scopus 로고    scopus 로고
    • Studying the dynamics of microbial populations during food fermentation
    • Giraffa G (2004). Studying the dynamics of microbial populations during food fermentation. Fems Microbiol. Rev., 28: 251-260.
    • (2004) Fems Microbiol. Rev. , vol.28 , pp. 251-260
    • Giraffa, G.1
  • 9
    • 35748972353 scopus 로고    scopus 로고
    • Molecular characterisation of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.)
    • Hovda M, Lunestad B, Fontanillas R, Rosnes J (2007). Molecular characterisation of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.), Aquaculture, 272: 581-588.
    • (2007) Aquaculture , vol.272 , pp. 581-588
    • Hovda, M.1    Lunestad, B.2    Fontanillas, R.3    Rosnes, J.4
  • 10
    • 0032863248 scopus 로고    scopus 로고
    • The influence of commonly used selective agents on the growth of Listeria monocytogenes
    • Jacobsen N (1999). The influence of commonly used selective agents on the growth of Listeria monocytogenes. Int. ernational J. Food Microbiol., 50: 221-226.
    • (1999) Int. ernational J. Food Microbiol. , vol.50 , pp. 221-226
    • Jacobsen, N.1
  • 11
    • 9944256168 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities associated with larvae of the Atlantic halibut propose succession from a uniform normal flora
    • Jensen S, Vres L, Bergh, Torsvik V (2004). Phylogenetic analysis of bacterial communities associated with larvae of the Atlantic halibut propose succession from a uniform normal flora. Syst. Appl. Microbiol., 27: 728-736.
    • (2004) Syst. Appl. Microbiol. , vol.27 , pp. 728-736
    • Jensen, S.1    Vres, L.2    Bergh, T.V.3
  • 12
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • (Stackebrandt E & Goodfellow M, eds). J. Wiley & Sons, Chichester, 115°C-175
    • Lane D (1991). 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt E & Goodfellow M, eds). J. Wiley & Sons, Chichester, 115°C-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics
    • Lane, D.1
  • 13
    • 77951130415 scopus 로고    scopus 로고
    • Estimation of dominant microbial population sizes in the anaerobic granular sludge of a full-scale UASB treating streptomycin wastewater by PCR-DGGE
    • Liu C, Yang J, Wu G, Zhang S, Li Z, Guo J (2010). Estimation of dominant microbial population sizes in the anaerobic granular sludge of a full-scale UASB treating streptomycin wastewater by PCR-DGGE. World J. Microbiol. Biotechnol., 26: 375-379.
    • (2010) World J. Microbiol. Biotechnol. , vol.26 , pp. 375-379
    • Liu, C.1    Yang, J.2    Wu, G.3    Zhang, S.4    Li, Z.5    Guo, J.6
  • 14
    • 58149327025 scopus 로고    scopus 로고
    • Dietary protein concentration affects intestinal microbiota of adult cats: A study using DGGE and qPCR to evaluate differences in microbial populations in the feline gastrointestinal tract
    • Lubbs D, Vester B, Fastinger N, Swanson K (2009). Dietary protein concentration affects intestinal microbiota of adult cats: a study using DGGE and qPCR to evaluate differences in microbial populations in the feline gastrointestinal tract. J. Anim. Physiol. Anim. Nutr. 93: 113-121.
    • (2009) J. Anim. Physiol. Anim. Nutr. , vol.93 , pp. 113-121
    • Lubbs, D.1    Vester, B.2    Fastinger, N.3    Swanson, K.4
  • 15
    • 39149088927 scopus 로고    scopus 로고
    • The use of molecular techniques to characterize the microbial communities in contaminated soil and water
    • Malik S, Beer M, Megharaj M, Naidu R (2008). The use of molecular techniques to characterize the microbial communities in contaminated soil and water. Environ. Int., 34: 265-276.
    • (2008) Environ. Int. , vol.34 , pp. 265-276
    • Malik, S.1    Beer, M.2    Megharaj, M.3    Naidu, R.4
  • 16
    • 0037224663 scopus 로고    scopus 로고
    • Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis
    • Meroth CB, Walter J, Hertel C, Brandt MJ, Hammes WP (2003). Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis. Appl. Environ. Microbiol., 69: 475-482.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 475-482
    • Meroth, C.B.1    Walter, J.2    Hertel, C.3    Brandt, M.J.4    Hammes, W.P.5
  • 18
    • 0033152336 scopus 로고    scopus 로고
    • DGGE/TGGE a method for identifying genes from natural ecosystems
    • Muyzer G (1999). DGGE/TGGE a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol., 2: 317-322.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 317-322
    • Muyzer, G.1
  • 19
    • 0022422655 scopus 로고
    • Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis
    • Myers R, Fischer S, Lerman L, Maniatis T (1985). Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Res., 13: p. 3131.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 3131
    • Myers, R.1    Fischer, S.2    Lerman, L.3    Maniatis, T.4
  • 20
    • 77955176184 scopus 로고    scopus 로고
    • Effect of the nitrification inhibitor dicyandiamide (DCD) on microbial communities in a pasture soil amended with bovine urine
    • O'Callaghan M, Gerard E, Carter P, Lardner R, Sarathchandra U, Burch G, Ghani A, Bell N (2010). Effect of the nitrification inhibitor dicyandiamide (DCD) on microbial communities in a pasture soil amended with bovine urine. Soil Biol. Biochem., 42: 1425-1436.
    • (2010) Soil Biol. Biochem. , vol.42 , pp. 1425-1436
    • O'Callaghan, M.1    Gerard, E.2    Carter, P.3    Lardner, R.4    Sarathchandra, U.5    Burch, G.6    Ghani, A.7    Bell, N.8
  • 21
    • 24944536368 scopus 로고    scopus 로고
    • Explorative screening of complex microbial communities by real-time 16S rDNA restriction fragment melting curve analyses
    • Rudi K, Skanseng B, Dromtorp S (2005). Explorative screening of complex microbial communities by real-time 16S rDNA restriction fragment melting curve analyses. Biol. Tech., 39: p. 116.
    • (2005) Biol. Tech. , vol.39 , pp. 116
    • Rudi, K.1    Skanseng, B.2    Dromtorp, S.3
  • 23
    • 1542285227 scopus 로고    scopus 로고
    • The evaluation of a mupirocin-based selective medium for the enumeration of bifidobacteria from probiotic animal feed
    • Simpson P, Fitzgerald G, Stanton C, Ross R (2004). The evaluation of a mupirocin-based selective medium for the enumeration of bifidobacteria from probiotic animal feed. J. Microbiol. Methods, 57: 9-16.
    • (2004) J. Microbiol. Methods , vol.57 , pp. 9-16
    • Simpson, P.1    Fitzgerald, G.2    Stanton, C.3    Ross, R.4
  • 24
    • 2342521512 scopus 로고    scopus 로고
    • Identification of lactic acid bacteria: Culture-dependent and culture-independent methods
    • Temmerman R, Huys G, Swings J (2004). Identification of lactic acid bacteria: culture-dependent and culture-independent methods. Trends Food Sci. Technol., 15: 348-359.
    • (2004) Trends Food Sci. Technol. , vol.15 , pp. 348-359
    • Temmerman, R.1    Huys, G.2    Swings, J.3
  • 25
    • 55949100662 scopus 로고    scopus 로고
    • The role of the amygdala in implicit evaluation of emotionally neutral faces
    • Todorov A, Engell A (2008). The role of the amygdala in implicit evaluation of emotionally neutral faces. Social Cognitive Affective Neurosci., 3: 303.
    • (2008) Social Cognitive Affective Neurosci. , vol.3 , pp. 303
    • Todorov, A.1    Engell, A.2
  • 26
    • 0033824163 scopus 로고    scopus 로고
    • Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA
    • Vainio E, Hantula J (2000). Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol. Res., 104: 927-936.
    • (2000) Mycol. Res. , vol.104 , pp. 927-936
    • Vainio, E.1    Hantula, J.2
  • 27
    • 54049118841 scopus 로고    scopus 로고
    • Identification of yeasts and evaluation of their distribution in Taiwanese Kefir and Viili starters
    • Wang S, Chen H, Liu J, Lin Y, Chen M (2008). Identification of yeasts and evaluation of their distribution in Taiwanese Kefir and Viili starters. J. Dairy Sci., 91: 3798-3805.
    • (2008) J. Dairy Sci. , vol.91 , pp. 3798-3805
    • Wang, S.1    Chen, H.2    Liu, J.3    Lin, Y.4    Chen, M.5
  • 28
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson I (1997). Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol., 63: p. 3741.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741
    • Wilson, I.1
  • 29
    • 0000856498 scopus 로고
    • Two nuclear mutations that block mitochondrial protein import in yeast
    • Yaffe M, Schatz G (1984). Two nuclear mutations that block mitochondrial protein import in yeast. Proc. Natl. Acad. Sci. USA., 81: p. 4819.
    • (1984) Proc. Natl. Acad. Sci. USA. , vol.81 , pp. 4819
    • Yaffe, M.1    Schatz, G.2
  • 30
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal E, Akkermans A, De Vos W (1998). Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol., 64: p. 3854.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3854
    • Zoetendal, E.1    Akkermans, A.2    de Vos, W.3
  • 31
    • 78049490006 scopus 로고    scopus 로고
    • Comparison of endodontic bacterial community structures in root canal-treated teeth with or without apical periodontitis
    • Zoletti G, Carmo F, Pereira E, Rosado A, Siqueira Jr. J, dos Santos K (2010). Comparison of endodontic bacterial community structures in root canal-treated teeth with or without apical periodontitis. J. Med. Microbiol., 159: p. 1360.
    • (2010) J. Med. Microbiol. , vol.159 , pp. 1360
    • Zoletti, G.1    Carmo, F.2    Pereira, E.3    Rosado, A.4    Siqueira Jr., J.5    dos Santos, K.6


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