Combination of hydrogel nanoparticles and proteomics to reveal secreted proteins associated with decidualization of human uterine stromal cells

Proteome Science

Volumn 9, Issue , 2011, Pages

  Paule, Sarah ^a   Meehan, Katie ^a   Rainczuk, Adam ^a   Stephens, Andrew N ^a   Nie, Guiying ^a  

^a HUDSON INSTITUTE OF MEDICAL RESEARCH   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

NANOPARTICLE; SECRETORY PROTEIN;

ARTICLE; CELL CULTURE; CONTROLLED STUDY; DECIDUALIZATION; FEMALE; FRACTIONATION; HUMAN; HUMAN CELL; HUMAN TISSUE; HYDROGEL; MOLECULAR WEIGHT; PROTEIN ANALYSIS; PROTEOMICS; SIZE EXCLUSION AFFINITY NANOPARTICLE METHOD; STROMA CELL; TECHNIQUE; UTERUS;

EID: 80052141202     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-9-50     Document Type: Article

References (24)

1. Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M. Interrelating different types of genomic data, from proteome to secretome: 'oming in on function. Genome Res 2001, 11:1463-1468. 10.1101/gr.207401, 11544189.
2. Faca VM, Hanash SM. In-depth proteomics to define the cell surface and secretome of ovarian cancer cells and processes of protein shedding. Cancer Res 2009, 69:728-730. 10.1158/0008-5472.CAN-08-3087, 19155298.
3. Luque-Garcia JL, Neubert TA. Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry. J Chromatogr A 2007, 1153:259-276. 10.1016/j.chroma.2006.11.054, 17166507.
4. Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 2005, 5:3226-3245. 10.1002/pmic.200500358, 16104056.
5. He P, He HZ, Dai J, Wang Y, Sheng QH, Zhou LP, Zhang ZS, Sun YL, Liu F, Wang K, et al. The human plasma proteome: analysis of Chinese serum using shotgun strategy. Proteomics 2005, 5:3442-3453. 10.1002/pmic.200401301, 16047309.
6. Lopez MF, Mikulskis A, Kuzdzal S, Golenko E, Petricoin EF, Liotta LA, Patton WF, Whiteley GR, Rosenblatt K, Gurnani P, et al. A novel, high-throughput workflow for discovery and identification of serum carrier protein-bound peptide biomarker candidates in ovarian cancer samples. Clin Chem 2007, 53:1067-1074. 10.1373/clinchem.2006.080721, 17463175.
7. Rainczuk A, Meehan K, Steer DL, Stanton PG, Robertson DM, Stephens AN. An optimized procedure for the capture, fractionation and proteomic analysis of proteins using hydrogel nanoparticles. Proteomics 2010, 10:332-336. 10.1002/pmic.200900187, 19899076.
8. Luchini A, Geho DH, Bishop B, Tran D, Xia C, Dufour RL, Jones CD, Espina V, Patanarut A, Zhou W, et al. Smart hydrogel particles: biomarker harvesting: one-step affinity purification, size exclusion, and protection against degradation. Nano Lett 2008, 8:350-361. 10.1021/nl072174l, 2877922, 18076201.
9. Bell SC, Jackson JA, Ashmore J, Zhu HH, Tseng L. Regulation of insulin-like growth factor-binding protein-1 synthesis and secretion by progestin and relaxin in long term cultures of human endometrial stromal cells. J Clin Endocrinol Metab 1991, 72:1014-1024. 10.1210/jcem-72-5-1014, 1708779.
10. Zhu HH, Huang JR, Mazella J, Rosenberg M, Tseng L. Differential effects of progestin and relaxin on the synthesis and secretion of immunoreactive prolactin in long term culture of human endometrial stromal cells. J Clin Endocrinol Metab 1990, 71:889-899. 10.1210/jcem-71-4-889, 2144857.
11. Gellersen B, Brosens J. Cyclic AMP and progesterone receptor cross-talk in human endometrium: a decidualizing affair. J Endocrinol 2003, 178:357-372. 10.1677/joe.0.1780357, 12967329.
12. Hoglund A, Donnes P, Blum T, Adolph HW, Kohlbacher O. MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. Bioinformatics 2006, 22:1158-1165. 10.1093/bioinformatics/btl002, 16428265.
13. Nair R, Carter P, Rost B. NLSdb: database of nuclear localization signals. Nucleic Acids Res 2003, 31:397-399. 10.1093/nar/gkg001, 165448, 12520032.
14. Falquet L, Pagni M, Bucher P, Hulo N, Sigrist CJ, Hofmann K, Bairoch A. The PROSITE database, its status in 2002. Nucleic Acids Res 2002, 30:235-238. 10.1093/nar/30.1.235, 99105, 11752303.
15. Mi H, Dong Q, Muruganujan A, Gaudet P, Lewis S, Thomas PD. PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res 38:D204-210.
16. Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, Daverman R, Diemer K, Muruganujan A, Narechania A. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 2003, 13:2129-2141. 10.1101/gr.772403, 403709, 12952881.
17. Lessey BA, Castelbaum AJ, Buck CA, Lei Y, Yowell CW, Sun J. Further characterization of endometrial integrins during the menstrual cycle and in pregnancy. Fertil Steril 1994, 62:497-506.
18. Ruck P, Marzusch K, Kaiserling E, Horny HP, Dietl J, Geiselhart A, Handgretinger R, Redman CW. Distribution of cell adhesion molecules in decidua of early human pregnancy. An immunohistochemical study. Lab Invest 1994, 71:94-101.
19. Merviel P, Challier JC, Carbillon L, Foidart JM, Uzan S. The role of integrins in human embryo implantation. Fetal Diagn Ther 2001, 16:364-371. 10.1159/000053942, 11694740.
20. Hurskainen T, Hoyhtya M, Tuuttila A, Oikarinen A, Autio-Harmainen H. mRNA expressions of TIMP-1, -2, and -3 and 92-KD type IV collagenase in early human placenta and decidual membrane as studied by in situ hybridization. J Histochem Cytochem 1996, 44:1379-1388. 10.1177/44.12.8985130, 8985130.
21. Ruck P, Marzusch K, Horny HP, Dietl J, Kaiserling E. The distribution of tissue inhibitor of metalloproteinases-2 (TIMP-2) in the human placenta. Placenta 1996, 17:263-266. 10.1016/S0143-4004(96)90047-8, 8761971.
22. Niu R, Okamoto T, Iwase K, Nomura S, Mizutani S. Quantitative analysis of matrix metalloproteinases-2 and -9, and their tissue inhibitors-1 and -2 in human placenta throughout gestation. Life Sci 2000, 66:1127-1137. 10.1016/S0024-3205(00)00416-1, 10737363.
23. Dey SK, Lim H, Das SK, Reese J, Paria BC, Daikoku T, Wang H. Molecular cues to implantation. Endocr Rev 2004, 25:341-373. 10.1210/er.2003-0020, 15180948.
24. Heng S, Paule S, Hardman B, Li Y, Singh H, Rainczuk A, Stephens AN, Nie G. Posttranslational activation of bone morphogenetic protein 2 is mediated by proprotein convertase 6 during decidualization for pregnancy establishment. Endocrinology 151:3909-3917.