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Volumn 53, Issue 6, 2007, Pages 1067-1074

A novel, high-throughput workflow for discovery and identification of serum carrier protein-bound peptide biomarker candidates in ovarian cancer samples

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; CARRIER PROTEIN; ION; PEPTIDE; PEPTIDE FRAGMENT; PLASMA PROTEIN;

EID: 34249864811     PISSN: 00099147     EISSN: None     Source Type: Journal    
DOI: 10.1373/clinchem.2006.080721     Document Type: Article
Times cited : (106)

References (45)
  • 1
    • 0347625462 scopus 로고    scopus 로고
    • Status of tumor markers in ovarian cancer screening
    • Bast RC. Status of tumor markers in ovarian cancer screening. J Clin Oncol 2003;21:200-5.
    • (2003) J Clin Oncol , vol.21 , pp. 200-205
    • Bast, R.C.1
  • 2
    • 30744460160 scopus 로고    scopus 로고
    • Ovarian cancer in the proteomics era: Diagnosis, prognosis, and therapeutics targets
    • Boyce EA, Kohn EC. Ovarian cancer in the proteomics era: diagnosis, prognosis, and therapeutics targets. Int J Gynecol Cancer 2005;15(Suppl 3):266-73.
    • (2005) Int J Gynecol Cancer , vol.15 , Issue.SUPPL. 3 , pp. 266-273
    • Boyce, E.A.1    Kohn, E.C.2
  • 3
    • 33745602539 scopus 로고    scopus 로고
    • Diagnosis and management of epithelial ovarian cancer
    • Bhoola S, Hoskins WJ. Diagnosis and management of epithelial ovarian cancer. Obstet Gynecol 2006;107:1399-410.
    • (2006) Obstet Gynecol , vol.107 , pp. 1399-1410
    • Bhoola, S.1    Hoskins, W.J.2
  • 6
  • 10
    • 4143067096 scopus 로고    scopus 로고
    • Three biomarkers identified from serum proteomic analysis for the detection of early stage ovarian cancer
    • Zheng Z, Bast RC Jr, Yu Y, Li J, Sokoll LJ, Rai AJ, et al. Three biomarkers identified from serum proteomic analysis for the detection of early stage ovarian cancer. Cancer Res 2004;64:5882-90.
    • (2004) Cancer Res , vol.64 , pp. 5882-5890
    • Zheng, Z.1    Bast Jr, R.C.2    Yu, Y.3    Li, J.4    Sokoll, L.J.5    Rai, A.J.6
  • 11
    • 0036324715 scopus 로고    scopus 로고
    • Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer
    • Li J, Zheng Z, Rosenzweig J, Wang YY, Chan DW. Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer. Clin Chem 2002;48:1296-1304.
    • (2002) Clin Chem , vol.48 , pp. 1296-1304
    • Li, J.1    Zheng, Z.2    Rosenzweig, J.3    Wang, Y.Y.4    Chan, D.W.5
  • 13
    • 33745442821 scopus 로고    scopus 로고
    • The MALDI-TOF mass spectromatric view of the plasma proteome end peptidome
    • Hortin GL. The MALDI-TOF mass spectromatric view of the plasma proteome end peptidome. Clin Chem 2006;52:1223-37.
    • (2006) Clin Chem , vol.52 , pp. 1223-1237
    • Hortin, G.L.1
  • 14
    • 33745955373 scopus 로고    scopus 로고
    • Proteomic patterns for cancer diagnosis-promise end challenges
    • Whiteley GR. Proteomic patterns for cancer diagnosis-promise end challenges. Mol BioSyst 2006;2:358-63.
    • (2006) Mol BioSyst , vol.2 , pp. 358-363
    • Whiteley, G.R.1
  • 15
    • 13844316757 scopus 로고    scopus 로고
    • Signal in noise: Evaluating reported reproducibility of serum proteomic tests for ovarian cancer
    • Baggerly KA, Morris JS, Edmonson SR, Coombes KR. Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer. J Natl Cancer Inst 2005;97:307-9.
    • (2005) J Natl Cancer Inst , vol.97 , pp. 307-309
    • Baggerly, K.A.1    Morris, J.S.2    Edmonson, S.R.3    Coombes, K.R.4
  • 17
    • 0042367739 scopus 로고    scopus 로고
    • Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics?
    • Diamandis EP. Point: proteomic patterns in biological fluids: do they represent the future of cancer diagnostics? Clin Chem 2003;49:1272-5.
    • (2003) Clin Chem , vol.49 , pp. 1272-1275
    • Diamandis, E.P.1
  • 18
    • 31044448275 scopus 로고    scopus 로고
    • Serum peptidome for cancer detection: Spinning biologic trash into diagnostic gold
    • Liotta LA, Petricoin EF. Serum peptidome for cancer detection: spinning biologic trash into diagnostic gold. J Clin Invest 2006;116:26-30.
    • (2006) J Clin Invest , vol.116 , pp. 26-30
    • Liotta, L.A.1    Petricoin, E.F.2
  • 20
    • 33748294174 scopus 로고    scopus 로고
    • Peptidomics for cancer diagnosis: Present and future
    • Diamandis EP. Peptidomics for cancer diagnosis: present and future. J Proteome Res 2006;9:2079-82.
    • (2006) J Proteome Res , vol.9 , pp. 2079-2082
    • Diamandis, E.P.1
  • 22
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu H, Sadygov RG, Yates JR. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem 2004;76:4193-201.
    • (2004) Anal Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates, J.R.3
  • 23
    • 12444339443 scopus 로고    scopus 로고
    • The human serum proteome: Displey of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins
    • Pieper R, Gatlin CL, Makusky AJ, Russo PS, Schatz CR, Miller SS, et al. The human serum proteome: displey of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins. Proteomics 2003;3:1345-64.
    • (2003) Proteomics , vol.3 , pp. 1345-1364
    • Pieper, R.1    Gatlin, C.L.2    Makusky, A.J.3    Russo, P.S.4    Schatz, C.R.5    Miller, S.S.6
  • 24
    • 0003206867 scopus 로고    scopus 로고
    • Toward a human blood serum proteome: Analysis by multidimensional separation coupled with mass spectrometry
    • Adkins JN, Varnum SM, Auberry KJ, Moore RJ, Angell NH, Smith RD, et al. Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry. Mol Cell Proteomics 2002;1:947-55.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 947-955
    • Adkins, J.N.1    Varnum, S.M.2    Auberry, K.J.3    Moore, R.J.4    Angell, N.H.5    Smith, R.D.6
  • 25
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR III. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 2001;19:242-7.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 26
    • 0037345828 scopus 로고    scopus 로고
    • A simple affinity spin tube filter method for removing high-abundant common proteins or enriching low-abundant biomarkers for serum proteomic analysis
    • Wang YY, Cheng P, Chan DW. A simple affinity spin tube filter method for removing high-abundant common proteins or enriching low-abundant biomarkers for serum proteomic analysis. Proteomics 2003;3:243-8.
    • (2003) Proteomics , vol.3 , pp. 243-248
    • Wang, Y.Y.1    Cheng, P.2    Chan, D.W.3
  • 28
    • 25444515944 scopus 로고    scopus 로고
    • High-resolution serum proteomic profiling of Alzheimer's disease samples reveals disease-specific, carrier-protein-bound mass signatures
    • Lopez MF, Mikulskis A, Kuzdzal S, Bennett D, Kelly J, Golenko E, et al. High-resolution serum proteomic profiling of Alzheimer's disease samples reveals disease-specific, carrier-protein-bound mass signatures. Clin Chem 2005;51:1946-54.
    • (2005) Clin Chem , vol.51 , pp. 1946-1954
    • Lopez, M.F.1    Mikulskis, A.2    Kuzdzal, S.3    Bennett, D.4    Kelly, J.5    Golenko, E.6
  • 31
    • 20844448187 scopus 로고    scopus 로고
    • Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery
    • Koomen JM, Li D, Xiao LC, Liu TC, Coombes KR, Abbruzzese J, et al. Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery. J Proteome Res 2005;4:972-81.
    • (2005) J Proteome Res , vol.4 , pp. 972-981
    • Koomen, J.M.1    Li, D.2    Xiao, L.C.3    Liu, T.C.4    Coombes, K.R.5    Abbruzzese, J.6
  • 32
    • 34249908736 scopus 로고    scopus 로고
    • Sing T, Sander O, Beerenwinkel N, Lengauer T. ROCR: An R Package for visualizing the performance of scoring classifiers. http://rocr.bioinf.mpi-sb. mpg.de (accessed January 2006).
    • Sing T, Sander O, Beerenwinkel N, Lengauer T. ROCR: An R Package for visualizing the performance of scoring classifiers. http://rocr.bioinf.mpi-sb. mpg.de (accessed January 2006).
  • 33
    • 84948746712 scopus 로고
    • Flexible Discriminant Analysis by Optimal Scoring
    • Hastle TJ, Tibshirani R, Buja A. Flexible Discriminant Analysis by Optimal Scoring. J Am Stat Assoc 1994;89:1255-70.
    • (1994) J Am Stat Assoc , vol.89 , pp. 1255-1270
    • Hastle, T.J.1    Tibshirani, R.2    Buja, A.3
  • 34
    • 25144494760 scopus 로고    scopus 로고
    • Prediction error estimation: A comparison of resampling methods
    • Molinaro AM, Simon R, Pfeiffer RM. Prediction error estimation: a comparison of resampling methods. Bioinformatics 2005;21:3294-3300.
    • (2005) Bioinformatics , vol.21 , pp. 3294-3300
    • Molinaro, A.M.1    Simon, R.2    Pfeiffer, R.M.3
  • 36
    • 17444383113 scopus 로고    scopus 로고
    • Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and clCAT with multidimensional liquid chromatography and tandem mass spectrometry
    • DeSouza L, Diehl G, Rodrigues MJ, Guo J, Romaschin AD, Colgan TJ, et al. Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and clCAT with multidimensional liquid chromatography and tandem mass spectrometry. J Proteome Res 2005;4:377-86.
    • (2005) J Proteome Res , vol.4 , pp. 377-386
    • DeSouza, L.1    Diehl, G.2    Rodrigues, M.J.3    Guo, J.4    Romaschin, A.D.5    Colgan, T.J.6
  • 37
    • 26944433460 scopus 로고    scopus 로고
    • Identification of differential genes in ovarian cancer using representational difference analysis of cDNA
    • Chen H, Wang M, Wang XY, Gao S, Wang J, Guan XM. Identification of differential genes in ovarian cancer using representational difference analysis of cDNA. Chin Med Sci J 2005;3:185-9.
    • (2005) Chin Med Sci J , vol.3 , pp. 185-189
    • Chen, H.1    Wang, M.2    Wang, X.Y.3    Gao, S.4    Wang, J.5    Guan, X.M.6
  • 38
    • 19644394534 scopus 로고    scopus 로고
    • Concentration of histamine in serum and tissues of the primary ductal breast cancers in women
    • Sieja K, Stanosz S, von Mach-Szczypinski J, Olewniczak S, Stanosz M. Concentration of histamine in serum and tissues of the primary ductal breast cancers in women. Breast 2005;14:236-41.
    • (2005) Breast , vol.14 , pp. 236-241
    • Sieja, K.1    Stanosz, S.2    von Mach-Szczypinski, J.3    Olewniczak, S.4    Stanosz, M.5
  • 39
    • 0345074092 scopus 로고    scopus 로고
    • Expression of keratin K2e in cutaneous and oral lesions: Association with keratinocyte activation, proliferation, and keratinization
    • Bloor BK, Tidman N, Leigh IM, Odell E, Dogan B, Wollina U, et al. Expression of keratin K2e in cutaneous and oral lesions: association with keratinocyte activation, proliferation, and keratinization. Am J Pathol 2003;162:963-75.
    • (2003) Am J Pathol , vol.162 , pp. 963-975
    • Bloor, B.K.1    Tidman, N.2    Leigh, I.M.3    Odell, E.4    Dogan, B.5    Wollina, U.6
  • 40
    • 28044455199 scopus 로고    scopus 로고
    • Altered mRNA expressions of sialyltransferases in ovarian cancers. Wang PH, Lee WL
    • Juang CM, Yang YH, Lo WH, Lai CR, Hsieh SL, Yuan CC. Altered mRNA expressions of sialyltransferases in ovarian cancers. Wang PH, Lee WL, Gynecol Oncol 2005;99:631-9.
    • (2005) Gynecol Oncol , vol.99 , pp. 631-639
    • Juang, C.M.1    Yang, Y.H.2    Lo WH, L.C.3    Hsieh, S.L.4    Yuan, C.C.5
  • 42
    • 33748454321 scopus 로고    scopus 로고
    • Mechanisms of cancer-induced thrombosis in cancer
    • Rickles FR. Mechanisms of cancer-induced thrombosis in cancer. Pathophysiol Haemost Thromb 2006;35:103-10.
    • (2006) Pathophysiol Haemost Thromb , vol.35 , pp. 103-110
    • Rickles, F.R.1
  • 44
    • 16844382968 scopus 로고    scopus 로고
    • Signaling intricacies take center stage in cancer cells
    • Kumar R, Hung M-C. Signaling intricacies take center stage in cancer cells. Cancer Res 2005;65:2511-5.
    • (2005) Cancer Res , vol.65 , pp. 2511-2515
    • Kumar, R.1    Hung, M.-C.2


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