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Volumn , Issue , 2011, Pages 375-382

A high performance implementation for Molecular Dynamics simulations on a FPGA supercomputer

Author keywords

[No Author keywords available]

Indexed keywords

FPGA CORE; MD SIMULATION; MOLECULAR DYNAMICS SIMULATIONS; MULTIPLE NODES; NONBONDED INTERACTION; PARALLEL MACHINE; PERFORMANCE GAIN; PERFORMANCE IMPLEMENTATION; PROCESSOR CORES; PROTEIN SYSTEM; SOFTWARE IMPLEMENTATION;

EID: 80052133904     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/AHS.2011.5963962     Document Type: Conference Paper
Times cited : (3)

References (16)
  • 3
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    • DOI 10.1002/(SIC I)1097-0134(1996 02)24:2<227::AID-PRO T9>3.0.CO;2-F
    • Z. R. Wasserman and C. N. Hodge, "Fitting an inhibitor into the active site of thermolysin: A molecular dynamics case study", J. Proteins: Structure, Function, and Bioinformatics, 24, pp. 227-237, 1996. (Pubitemid 26076371)
    • (1996) Proteins: Structure, Function and Genetics , vol.24 , Issue.2 , pp. 227-237
    • Wasserman, Z.R.1    Hodge, C.N.2
  • 4
    • 0030585428 scopus 로고    scopus 로고
    • Solution structure of the donor site of a trans-splicing RNA
    • N. L. Greenbaum, I. Radhakrishnan, D. J. Patel and D. Hirsh, "Solution structure of the donor site of a trans-splicing RNA", J. Structure, 4, pp. 725-733, 1996. (Pubitemid 126661295)
    • (1996) Structure , vol.4 , Issue.6 , pp. 725-733
    • Greenbaum, N.L.1    Radhakrishnan, I.2    Patel, D.J.3    Hirsh, D.4
  • 8
    • 78449313900 scopus 로고    scopus 로고
    • LAMMPS manual, http://lammps.sandia.gov/doc/Manual.html.
    • LAMMPS Manual
  • 11
    • 84977266737 scopus 로고
    • Evaluation of optical and electrostatic lattice potentials
    • P. P. Ewald, "Evaluation of optical and electrostatic lattice potentials", Ann. Phys Leipzig, 64, pp. 253-287, 192J.
    • (1921) Ann. Phys Leipzig , vol.64 , pp. 253-287
    • Ewald, P.P.1
  • 15
    • 80052134886 scopus 로고    scopus 로고
    • Xilinx Virtex-4 datasheets, http://www.xilinx.com/products/silicon- solutions/fpgas/virtex/virtex4/index.htm.
    • Xilinx Virtex-4 Datasheets
  • 16
    • 84986471218 scopus 로고
    • Error evaluation in the design of a special-purpose processor that calculates nonbonded forces in mole-cular dynamics simulations
    • T. Amisaki, T. Fujiwara, A. Kusumi, H. Miyagawa and K. Kitamura, "Error evaluation in the design of a special-purpose processor that calculates nonbonded forces in mole-cular dynamics simulations", J. Computational Chemistry, 16, pp. 1120-1130, 1995.
    • (1995) J. Computational Chemistry , vol.16 , pp. 1120-1130
    • Amisaki, T.1    Fujiwara, T.2    Kusumi, A.3    Miyagawa, H.4    Kitamura, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.