메뉴 건너뛰기




Volumn 4, Issue 6, 1996, Pages 725-733

Solution structure of the donor site of a trans-splicing RNA

Author keywords

NMR; RNA; Splicing; Stem loop; Structure

Indexed keywords

CAENORHABDITIS ELEGANS; EUKARYOTA;

EID: 0030585428     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(96)00078-0     Document Type: Article
Times cited : (28)

References (43)
  • 1
    • 0027451110 scopus 로고
    • Trans-splicing of nematode premessenger RNA
    • Nilsen, T.W. (1993). Trans-splicing of nematode premessenger RNA. Annu. Rev. Microbiol. 47, 413-440.
    • (1993) Annu. Rev. Microbiol. , vol.47 , pp. 413-440
    • Nilsen, T.W.1
  • 2
    • 0026474166 scopus 로고
    • RNA trans-splicing
    • (Setlow, J.K., ed), Plenum Press, New York
    • Huang, X.-Y. & Hirsh, D. (1992). RNA trans-splicing. In Genetic Engineering. (Setlow, J.K., ed), vol. 14, pp. 211-229, Plenum Press, New York.
    • (1992) Genetic Engineering , vol.14 , pp. 211-229
    • Huang, X.-Y.1    Hirsh, D.2
  • 3
    • 0024117723 scopus 로고
    • Cis and trans mRNA splicing in C. elegans
    • Blumenthal, T. & Thomas, J. (1988). Cis and trans mRNA splicing in C. elegans. Trends Genet. 4, 305-308.
    • (1988) Trends Genet. , vol.4 , pp. 305-308
    • Blumenthal, T.1    Thomas, J.2
  • 4
    • 0023659440 scopus 로고
    • A trans-spliced leader sequence on actin mRNA in c. elegans
    • Krause, M. & Hirsh, D. (1987). A trans-spliced leader sequence on actin mRNA in c. elegans. Cell 49, 753-761.
    • (1987) Cell , vol.49 , pp. 753-761
    • Krause, M.1    Hirsh, D.2
  • 5
    • 0028033820 scopus 로고
    • Operons as a common form of chromosomal organization in C. elegans
    • Zorio, D.A.R., Cheng, N.N., Blumenthal, T. & Spieth, J. (1994). Operons as a common form of chromosomal organization in C. elegans. Nature 372, 270-272.
    • (1994) Nature , vol.372 , pp. 270-272
    • Zorio, D.A.R.1    Cheng, N.N.2    Blumenthal, T.3    Spieth, J.4
  • 6
    • 85030019719 scopus 로고
    • A second trans-spliced RNA leader sequence in the nematode Caenorhabditis elegans
    • Huang, X.-Y. & Hirsh, D. (1989). A second trans-spliced RNA leader sequence in the nematode Caenorhabditis elegans, Proc. Natl Acad. 372, 270-272.
    • (1989) Proc. Natl Acad. , vol.372 , pp. 270-272
    • Huang, X.-Y.1    Hirsh, D.2
  • 7
    • 0029124067 scopus 로고
    • Structure and expression of novel spliced leader RNA genges in Caenorhanbditis elegans
    • Ross, L.H., Freedman, J.H. & Rubin, C.S. (1995). Structure and expression of novel spliced leader RNA genges in Caenorhanbditis elegans. J. Biol. Chem. 270, 22066-22075.
    • (1995) J. Biol. Chem. , vol.270 , pp. 22066-22075
    • Ross, L.H.1    Freedman, J.H.2    Rubin, C.S.3
  • 8
    • 0025787954 scopus 로고
    • Biochemical mechanisms of constitutive and regulated pre-mRNA splicing
    • Green, M.R. (1991). Biochemical mechanisms of constitutive and regulated pre-mRNA splicing.Annu. Rev. Cell Biol. 7, 559-599.
    • (1991) Annu. Rev. Cell Biol. , vol.7 , pp. 559-599
    • Green, M.R.1
  • 9
    • 0001877802 scopus 로고
    • Splicing of precursors to messenger RNAs by the spliceosome
    • (Gesteland, R.F. & Atkins, J.F., eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Moore, M.J., Query, C.C. & Sharp, P.A. (1993). Splicing of precursors to messenger RNAs by the spliceosome. In The RNA World. (Gesteland, R.F. & Atkins, J.F., eds), pp. 303-357, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
    • (1993) The RNA World , pp. 303-357
    • Moore, M.J.1    Query, C.C.2    Sharp, P.A.3
  • 10
    • 0022131865 scopus 로고
    • On the origins of RNA splicing and introns
    • Sharp, P.A. (1985). On the origins of RNA splicing and introns. Cell 42, 397-400.
    • (1985) Cell , vol.42 , pp. 397-400
    • Sharp, P.A.1
  • 11
    • 0003017978 scopus 로고
    • Structure and mechanism of the large catalytic RNAs: Group I and Group II intorns and ribonuclease P
    • (Gesteland, R.F. & Atkins, J.F., eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Cech, T.R.(1993). Structure and mechanism of the large catalytic RNAs: Group I and Group II intorns and ribonuclease P. In The RNA World. (Gesteland, R.F. & Atkins, J.F., eds), pp. 239-269, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
    • (1993) The RNA World , pp. 239-269
    • Cech, T.R.1
  • 12
    • 0024280271 scopus 로고    scopus 로고
    • Trans splicing involves a novel form of small nuclear ribonucleoprotein particles
    • Bruzik, J.P., Van Doren, K., Hirsh, D. & Steitz, J.A. (1998). Trans splicing involves a novel form of small nuclear ribonucleoprotein particles.Nature 335, 556-562.
    • (1998) Nature , vol.335 , pp. 556-562
    • Bruzik, J.P.1    Van Doren, K.2    Hirsh, D.3    Steitz, J.A.4
  • 13
    • 0024280270 scopus 로고    scopus 로고
    • Trans-spliced leader RNA exists as small nuclear ribonucleoprotein particles in Caenorhabditis elegans
    • Van Doren, K. & Hirsh, D. (1998). Trans-spliced leader RNA exists as small nuclear ribonucleoprotein particles in Caenorhabditis elegans: Nature 335, 556-559.
    • (1998) Nature , vol.335 , pp. 556-559
    • Van Doren, K.1    Hirsh, D.2
  • 14
    • 0025237190 scopus 로고
    • Trans-spliced Caenorhabditis elegans mRNAs retain trimethylguanosine caps
    • Liou, R.-F. & Blumenthal, T. (1990). Trans-spliced Caenorhabditis elegans mRNAs retain trimethylguanosine caps. Mol. Cell. Biol. 10, 1764-1768.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 1764-1768
    • Liou, R.-F.1    Blumenthal, T.2
  • 15
    • 0025210560 scopus 로고
    • mRNAs that mature through transsplicing in Caenorhabditis elegans have a trimethylguanosine cap at their 5′ termini
    • Van Doren, K. & Hirsh, D. (1990). mRNAs that mature through transsplicing in Caenorhabditis elegans have a trimethylguanosine cap at their 5′ termini. Mol. Cell. Biol. 10, 1769-1772.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 1769-1772
    • Van Doren, K.1    Hirsh, D.2
  • 16
    • 0024285011 scopus 로고    scopus 로고
    • The C. elegans trans-spliced leader RNA is bound to Sm and has a trinethylguanosine cap
    • Thomas, J.D., Conrad, R.C. & Blumenthal, T. (1998). The C. elegans trans-spliced leader RNA is bound to Sm and has a trinethylguanosine cap. Cell 54, 533-539.
    • (1998) Cell , vol.54 , pp. 533-539
    • Thomas, J.D.1    Conrad, R.C.2    Blumenthal, T.3
  • 17
    • 0025811124 scopus 로고
    • Structure of an unusually stable RNA hairpin
    • Varani, G., Cheong, C. & Tinoco, I. (1991). Structure of an unusually stable RNA hairpin. Biochemistry 30, 3280-3289.
    • (1991) Biochemistry , vol.30 , pp. 3280-3289
    • Varani, G.1    Cheong, C.2    Tinoco, I.3
  • 18
    • 0026587746 scopus 로고
    • NMR analysis of Helix I from the 5S RNA of Escherichia coli
    • White, S.A., Niges, M., Huang, A., Brünger, A.T. & Moore, P.B. (1992). NMR analysis of Helix I from the 5S RNA of Escherichia coli. Biochemistry 31, 1610-1621.
    • (1992) Biochemistry , vol.31 , pp. 1610-1621
    • White, S.A.1    Niges, M.2    Huang, A.3    Brünger, A.T.4    Moore, P.B.5
  • 19
    • 0026423027 scopus 로고
    • Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops
    • Heus, H.A. & Pardi, A. (1991). Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops.Science 253, 191-194.
    • (1991) Science , vol.253 , pp. 191-194
    • Heus, H.A.1    Pardi, A.2
  • 20
    • 0027081208 scopus 로고
    • A base-triple structural domain in RNA
    • Chastain, M. & Tinoco, I., Jr. (1992). A base-triple structural domain in RNA. Biochemistry 31, 12733-12741.
    • (1992) Biochemistry , vol.31 , pp. 12733-12741
    • Chastain, M.1    Tinoco Jr., I.2
  • 21
  • 23
    • 0028951325 scopus 로고
    • Divalent metalion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns
    • Allain, F. H.-T. & Varani, G. (1995). Divalent metalion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns. Nucleic Acids Res. 23, 341-350.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 341-350
    • Allain, F.H.-T.1    Varani, G.2
  • 24
    • 0029082074 scopus 로고
    • Determination of the folding topology of the SL1 RNA from Caenorhabditis elegans by multidimensional heteronuclear NMR
    • Greenbaum, N.L., Radhakrishnan, I., Hirsh, D. & Patel, D.J. (1995). Determination of the folding topology of the SL1 RNA from Caenorhabditis elegans by multidimensional heteronuclear NMR. J. Mol. Biol. 252, 314-327.
    • (1995) J. Mol. Biol. , vol.252 , pp. 314-327
    • Greenbaum, N.L.1    Radhakrishnan, I.2    Hirsh, D.3    Patel, D.J.4
  • 25
    • 0030031397 scopus 로고    scopus 로고
    • Determining RNA solution structure by segmental isotopic labelling and NMR: Application to Caenorhabditis elegans spliced leader RNA 1
    • Xu, J., Lapham, J. & Crothers, D.M. (1996). Determining RNA solution structure by segmental isotopic labelling and NMR: Application to Caenorhabditis elegans spliced leader RNA 1. Proc. Natl. Acad. Sci. USA 93, 44-48.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 44-48
    • Xu, J.1    Lapham, J.2    Crothers, D.M.3
  • 27
    • 0018634454 scopus 로고
    • A direct demonstration that the ethnol-induced transition of DNA is between the A and B forms: An X-ray diffraction study
    • Zimmerman, S.B. & Pheiffer, B.H. (1979). A direct demonstration that the ethnol-induced transition of DNA is between the A and B forms: an X-ray diffraction study. J. Mol. Biol. 135, 1023-1027.
    • (1979) J. Mol. Biol. , vol.135 , pp. 1023-1027
    • Zimmerman, S.B.1    Pheiffer, B.H.2
  • 28
    • 0000356656 scopus 로고
    • A graphics model building and refinement system for macromolecules
    • Jones, T.A. (1987). A graphics model building and refinement system for macromolecules J. Appl. Cryst. 11, 268-272.
    • (1987) J. Appl. Cryst. , vol.11 , pp. 268-272
    • Jones, T.A.1
  • 29
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley, H.W., Flaherty, K.M. & McKay, D.E. (1994). Three-dimensional structure of a hammerhead ribozyme. Nature 372, 68-74.
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.E.3
  • 30
    • 0024291338 scopus 로고
    • Substrate recognition and splice site determination in yeast tRNA splicing
    • Reyes, V.M. & Abelson, J. (1988). Substrate recognition and splice site determination in yeast tRNA splicing. Cell 55, 719-730.
    • (1988) Cell , vol.55 , pp. 719-730
    • Reyes, V.M.1    Abelson, J.2
  • 32
    • 0026533724 scopus 로고
    • Exon sequence and structure requirements for tRNA splicing in Saccharomyces cerevisiae
    • Shapero, M.H. & Greer, C.L. (1992). Exon sequence and structure requirements for tRNA splicing in Saccharomyces cerevisiae. Biochemistry 31, 2359-2367.
    • (1992) Biochemistry , vol.31 , pp. 2359-2367
    • Shapero, M.H.1    Greer, C.L.2
  • 33
    • 0002598414 scopus 로고
    • Typs II restriction endonucleases
    • (Linn, S.M., Lloyd, R.S., Roberts, R.J., eds), Clod Spring Harbor Laboratory Press, Cold Spring Harbor , New York
    • Roberts, R.J. & Halford,S.E. (1993). Typs II restriction endonucleases. In Nucleases. (Linn, S.M., Lloyd, R.S., Roberts, R.J., eds), pp. 35-88, Clod Spring Harbor Laboratory Press, Cold Spring Harbor , New York.
    • (1993) Nucleases , pp. 35-88
    • Roberts, R.J.1    Halford, S.E.2
  • 34
    • 0000933280 scopus 로고
    • Transmations to optimize the superposition of similar structures
    • Hendrickson, W.A. (1979), Transmations to optimize the superposition of similar structures. Acta Cryst. A 35, 158-163.
    • (1979) Acta Cryst. A , vol.35 , pp. 158-163
    • Hendrickson, W.A.1
  • 35
    • 0028004607 scopus 로고
    • Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
    • Oubridge, C., Ito, N., Evans, P.R., Teo, C.-H. & Nagai, K. (1994). Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372, 432-438.
    • (1994) Nature , vol.372 , pp. 432-438
    • Oubridge, C.1    Ito, N.2    Evans, P.R.3    Teo, C.-H.4    Nagai, K.5
  • 36
    • 0026769448 scopus 로고
    • n-bulge loops in DNA duplexes; intrahelical stacking of A, A-A, and A-A-A bulge loops
    • n-bulge loops in DNA duplexes; intrahelical stacking of A, A-A, and A-A-A bulge loops. Biochemistry 31, 4004-4014.
    • (1992) Biochemistry , vol.31 , pp. 4004-4014
    • Rosen, M.A.1    Live, D.2    Patel, D.J.3
  • 37
    • 0029024877 scopus 로고
    • Proton NMR and structural features of a 24-nucleotide RNA hairpin
    • Borer, P.N., et al., & Pelczer, I. (1995), Proton NMR and structural features of a 24-nucleotide RNA hairpin. Biochemistry 34, 6488-6503.
    • (1995) Biochemistry , vol.34 , pp. 6488-6503
    • Borer, P.N.1    Pelczer, I.2
  • 38
    • 0027761185 scopus 로고
    • Disruption of base pairing between the 5′ splice site and the 5′ end of U1 snRNA is required for spliceosome assembly
    • Konforti, B.B., Koziolkiewicz, M.J. & Konarska, M.M. (1993). Disruption of base pairing between the 5′ splice site and the 5′ end of U1 snRNA is required for spliceosome assembly. Cell 75, 863-873.
    • (1993) Cell , vol.75 , pp. 863-873
    • Konforti, B.B.1    Koziolkiewicz, M.J.2    Konarska, M.M.3
  • 39
    • 0025857390 scopus 로고
    • Mutations in yeast U5 snRNA alter the specificity of 5′ splice-site cleavage
    • Newman, A. & Norman, C. (1991). Mutations in yeast U5 snRNA alter the specificity of 5′ splice-site cleavage. Cell 75, 115-123.
    • (1991) Cell , vol.75 , pp. 115-123
    • Newman, A.1    Norman, C.2
  • 40
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls, A., Sharp, K.A. & Honig, B.H. (1991). Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296.
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.H.3
  • 42
    • 0002822992 scopus 로고
    • 1H distances in nucleic acids
    • John Wiley & Sons, New York
    • 1H distances in nucleic acids. In NMR of Proteins and Nucleic Acids, pp. 203-223, John Wiley & Sons, New York.
    • (1986) NMR of Proteins and Nucleic Acids , pp. 203-223
    • Wüthrich, K.1
  • 43
    • 0026651557 scopus 로고
    • NMR structure determination in solution: A critique and comparison with X-ray crystallography
    • Wagner, G., Hyberts, S.G. & Havel, T.F. (1992). NMR structure determination in solution: a critique and comparison with X-ray crystallography. Annu. Rev. Biophys. Biomol. Struct. 21, 167-198.
    • (1992) Annu. Rev. Biophys. Biomol. Struct. , vol.21 , pp. 167-198
    • Wagner, G.1    Hyberts, S.G.2    Havel, T.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.