A stochastic surrogate Hamiltonian approach of coherent and incoherent exciton transport in the Fenna-Matthews-Olson complex

Journal of Chemical Physics

Volumn 135, Issue 7, 2011, Pages

  Renaud, N ^a   Ratner, M A ^a   Mujica, V ^b,c  

^a NORTHWESTERN UNIVERSITY   (United States)

^b ARIZONA STATE UNIVERSITY   (United States)

^c ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL DEVICES; BACTERIOCHLOROPHYLLS; COHERENT OSCILLATIONS; EFFICIENT ENERGY TRANSFER; ENERGY RELAXATION; ENERGY TRANSPORT; EXCITON TRANSPORT; HAMILTONIAN APPROACH; HAMILTONIAN METHODS; QUANTUM TRAJECTORIES; STRUCTURAL WORKS; WEAK-MIXING;

ENERGY TRANSFER; EXCITONS; QUANTUM CHEMISTRY; SPECTRAL DENSITY; STOCHASTIC SYSTEMS;

HAMILTONIANS;

ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; ELECTRON TRANSPORT; LIGHT HARVESTING SYSTEM; STATISTICS;

ELECTRON TRANSPORT; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, BIOLOGICAL; STOCHASTIC PROCESSES;

EID: 80052053764     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3624376     Document Type: Article

References (42)

1. H. C. Longuet-Higgins, Biophys. J. 2, 207 (1968). 10.1016/S0006-3495(62) 86957-4
2. M. Arndy, T. Juffmann, and V. Vedral, HFSP J. 3, 386 (2008). 10.2976/1.3244985
3. E. Schrodinger, What is Life? The Physical Aspect of the Living Cell (Cambridge University Press, Cambridge, England, 1944).
4. T. Forster, Ann. Phys. 437, 55 (1948). 10.1002/andp.19484370105
5. R. E. Fenna and B. W. Matthews, Nature (London) 258, 573 (1975). 10.1038/258573a0
6. T. Brixner, T. Mancal, I. V. Stiopkin, and G. R. Fleming, J. Chem. Phys. 121, 4221 (2004). 10.1063/1.1776112
7. T. Brixner, J. Stenger, H. M. Vaswani, M. Cho, R. E. Blankenship, and G. R. Fleming, Nature (London) 434, 625 (2005). 10.1038/nature03429 (Pubitemid 40488551)
8. G. S. Engel, T. R. Calhoun, E. L. Read, T.-K. Ahn, T. Mancal, Y. C. Cheng, R. E. Blankenship, and G. R. Fleming, Nature (London) 446, 782 (2007). 10.1038/nature05678 (Pubitemid 46582029)
9. E. Collini, C. Y. Wong, K. E. Wilk, P. M.G. Curmi, P. Brumer, and G. D. Scholes, Nature (London) 463, 644 (2010). 10.1038/nature08811
10. J. Strmpfer and K. Schulten, J. Chem. Phys. 131, 225101 (2009). 10.1063/1.3271348
11. T. R. Calhoun, N. S. Ginsberg, G. S. Schlau-Cohen, Y.-C. Cheng, M. Ballottari, R. Bassi, and G. R. Fleming, J. Phys. Chem. B 113, 16291 (2009). 10.1021/jp908300c
12. M. Mohseni, P. Rebentrost, S. Lloyd, and A. Aspuru-Guzik, J. Chem. Phys. 129, 174106 (2008). 10.1063/1.3002335
13. S. Lloyd, Nat. Phys. 5, 164 (2009). 10.1038/nphys1208
14. V. L. Gunderson, S. M. Mickley, and M. R. Wasielewski, Chem. Commun. 46, 401 (2010). 10.1039/b921084a
15. D. E. Tronrud, J. Wen, L. Gay, and R. E. Blankenship, Photosynth. Res. 100, 79 (2009). 10.1007/s11120-009-9430-6
16. J. Adolphs and T. Renger, Biophys. J. 91, 2778 (2006). 10.1529/biophysj.105.079483 (Pubitemid 44526469)
17. M. S. Busch, F. Muh, M. E. A. Madjet, and T. Renger, J. Phys. Chem. Lett. 2, 93 (2011). 10.1021/jz101541b
18. H. P. Breuer and F. Petruccione, The Theory of Open Quantum System (Oxford University Press, New York, 2002).
19. S. Nakajima, Prog. Rep. Theor. Phys. 20, 948 (1958). 10.1143/PTP.20.948
20. R. Zwanzig, J. Chem. Phys. 33, 1338 (1960). 10.1063/1.1731409
21. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 130, 234110 (2009). 10.1063/1.3155214
22. B. Palmieri, D. Abramavicius, and S. Mukamel, J. Chem. Phys. 130, 204512 (2009). 10.1063/1.3142485
23. D. Egorova, A. Kuhl, and W. Domcke, Chem. Phys. 268, 105 (2001). 10.1016/S0301-0104(01)00293-2 (Pubitemid 32525892)
24. K. Dietz, J. Phys. A 36, 5595 (2003). 10.1088/0305-4470/36/20/315
25. J. Dalibard, Y. Castin, and K. Molmer, Phys. Rev. Lett 68, 580 (1992). 10.1103/PhysRevLett.68.580
26. J. Pillo, K. Hrknen, S. Maniscalco, and K.-A. Suominen, Phys. Rev. A 79, 062112 (2009). 10.1103/PhysRevA.79.062112
27. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 130, 234111 (2009). 10.1063/1.3155372
28. C. P. Koch, T. Kluner, and R. Kosloff, J. Chem. Phys. 116, 7983 (2002). 10.1063/1.1450124 (Pubitemid 34555071)
29. C. P. Koch, T. Kluner, H.-J. Freund, and R. Kosloff, Phys. Rev. Lett. 90, 117601 (2003). 10.1103/PhysRevLett.90.117601
30. G. Katz, R. Kosloff, and M. A. Ratner, J. Chem. Phys. 129, 034108 (2008). 10.1063/1.2946703
31. G. Katz, R. Kosloff, and M. A. Ratner, New J. Phys. 12, 015003 (2010). 10.1088/1367-2630/12/1/015003
32. E.-M. Laine, J. Piilo, and H.-P. Breuer, Phys. Rev. A 81, 062115 (2010). 10.1103/PhysRevA.81.062115
33. D. Gelman and R. Kosloff, Chem. Phys. Lett. 381, 129 (2003). 10.1016/j.cplett.2003.09.119
34. A. Ishizaki and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 106, 17255 (2009). 10.1073/pnas.0908989106
35. S. Mukamel, Principles of Nonlinear Optics and Spectroscopy (Oxford University Press, New York, 1995).
36. R. Mosseri and R. Dandoloff, J. Phys. A 34, 10243 (2001). 10.1088/0305-4470/34/47/324
37. D. Arbamavicius and S. Mukamel, Proc. Natl. Acad. Sci. U.S.A. 105, 8525 (2008). 10.1073/pnas.0802926105 (Pubitemid 351987713)
38. P. Rebentrost, R. Chakraborty, and A. Aspuru-Guzik, J. Chem. Phys. 131, 184102 (2009). 10.1063/1.3259838
39. A. Pedromo, L. Vogt, A. Namaje, and A. Aspuru-Guzik, Appl. Phys. Lett. 96, 093114 (2010). 10.1063/1.3323108
40. D. Abramavicius and S. Mukamel, J. Chem. Phys. 133, 184501 (2010). 10.1063/1.3493580
41. V. I. Novoderezhkin, J. P. Dekker, and R. van Grondelle, Biophys. J. 93, 1293 (2007). 10.1529/biophysj.106.096867 (Pubitemid 47330909)
42. C. Olbrich, T. L. C. Jansen, J. Liebers, M. Aghtar, J. Strmpfer, K. Schulten, J. Knoester, and U. Kleinekathfer, J. Phys. Chem. B 115, 8609 (2011). 10.1021/jp202619a