-
1
-
-
67650077384
-
Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins?
-
Englebienne, P.; Moitessier, N. Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins? J. Chem. Inf. Model. 2009, 49, 1568-1580
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1568-1580
-
-
Englebienne, P.1
Moitessier, N.2
-
2
-
-
0036827075
-
Reoptimization of MDL keys for use in drug discovery
-
DOI 10.1021/ci010132r
-
Durant, J. L.; Leland, B. A.; Henry, D. R.; Nourse, J. G. Reoptimization of MDL Keys for Use in Drug Discovery J. Chem. Inf. Comput. Sci. 2002, 42, 1273-1280 (Pubitemid 35468313)
-
(2002)
Journal of Chemical Information and Computer Sciences
, vol.42
, Issue.6
, pp. 1273-1280
-
-
Durant, J.L.1
Leland, B.A.2
Henry, D.R.3
Nourse, J.G.4
-
3
-
-
10044239085
-
An Elementary Mathematical Theory of Classification and Prediction
-
New York.
-
Tanimoto, T. T. An Elementary Mathematical Theory of Classification and Prediction. IBM Internal Report, New York, 1958.
-
(1958)
IBM Internal Report
-
-
Tanimoto, T.T.1
-
4
-
-
33750991346
-
Benchmarking sets for molecular docking
-
DOI 10.1021/jm0608356
-
Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking Sets for Molecular Docking J. Med. Chem. 2006, 49, 6789-6801 (Pubitemid 44749746)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.23
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
-
5
-
-
79952161315
-
Virtual Decoy Sets for Molecular Docking Benchmarks
-
Wallach, I.; Lilien, R. Virtual Decoy Sets for Molecular Docking Benchmarks J Chem. Inf. Model. 2011, 51, 196-202
-
(2011)
J Chem. Inf. Model.
, vol.51
, pp. 196-202
-
-
Wallach, I.1
Lilien, R.2
-
6
-
-
0346731233
-
Multiple Active Site Corrections for Docking and Virtual Screening
-
DOI 10.1021/jm030161o
-
Vigers, G. P.; Rizzi, J. P. Multiple Active Site Corrections for Docking and Virtual Screening J. Med. Chem. 2004, 47, 80-89 (Pubitemid 38040492)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.1
, pp. 80-89
-
-
Vigers, G.P.A.1
Rizzi, J.P.2
-
7
-
-
33745384959
-
Ligand bias of scoring functions in structure-based virtual screening
-
DOI 10.1021/ci050407t
-
Jacobsson, M.; Karlén, A. Ligand Bias of Scoring Functions in Structure-Based Virtual Screening J. Chem. Inf. Model. 2006, 46, 1334-1343 (Pubitemid 43999176)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.3
, pp. 1334-1343
-
-
Jacobsson, M.1
Karlen, A.2
-
8
-
-
0346665839
-
Gaussian docking functions
-
DOI 10.1002/bip.10207
-
McGann, M. R.; Almond, H. R.; Nicholls, A.; Grant, J. A.; Brown, F. K. Gaussian Docking Functions Biopolymers 2003, 68, 76-90 (Pubitemid 36098309)
-
(2003)
Biopolymers
, vol.68
, Issue.1
, pp. 76-90
-
-
McGann, M.R.1
Almond, H.R.2
Nicholls, A.3
Grant, J.A.4
Brown, F.K.5
-
9
-
-
24944576105
-
Similarities among receptor pockets and among compounds: Analysis and application to in silico ligand screening
-
DOI 10.1016/j.jmgm.2005.04.004, PII S1093326305000306
-
Fukunishi, Y.; Mikami, Y.; Nakamura, H. Similarities among Receptor Pockets and among Compounds: Analysis and Application to in Silico Ligand Screening J. Mol. Graphics Modell. 2005, 24, 34-45 (Pubitemid 41318116)
-
(2005)
Journal of Molecular Graphics and Modelling
, vol.24
, Issue.1
, pp. 34-45
-
-
Fukunishi, Y.1
Mikami, Y.2
Nakamura, H.3
-
10
-
-
79952273043
-
A Unified, Probabilistic Framework for Structure- and Ligand-Based Virtual Screening
-
Swann, S. L.; Brown, S. P.; Muchmore, S. W.; Patel, H.; Merta, P.; Locklear, J.; Hajduk, P. J. A Unified, Probabilistic Framework for Structure- and Ligand-Based Virtual Screening J. Med. Chem. 2011, 54, 1223-1232
-
(2011)
J. Med. Chem.
, vol.54
, pp. 1223-1232
-
-
Swann, S.L.1
Brown, S.P.2
Muchmore, S.W.3
Patel, H.4
Merta, P.5
Locklear, J.6
Hajduk, P.J.7
-
11
-
-
13844312649
-
ZINC - A free database of commercially available compounds for virtual screening
-
DOI 10.1021/ci049714+
-
Irwin, J. J.; Shoichet, B. K. ZINC-A Free Database of Commercially Available Compounds for Virtual Screening J. Chem. Inf. Model. 2005, 45, 177-182 (Pubitemid 40736970)
-
(2005)
Journal of Chemical Information and Modeling
, vol.45
, Issue.1
, pp. 177-182
-
-
Irwin, J.J.1
Shoichet, B.K.2
-
12
-
-
78651321597
-
Biased Retrieval of Chemical Series in Receptor-Based Virtual Screening
-
Brooijmans, N.; Cross, J. B.; Humblet, C. Biased Retrieval of Chemical Series in Receptor-Based Virtual Screening J. Comput.-Aided Mol. Des. 2010, 24, 1053-1062
-
(2010)
J. Comput.-Aided Mol. Des.
, vol.24
, pp. 1053-1062
-
-
Brooijmans, N.1
Cross, J.B.2
Humblet, C.3
-
13
-
-
41349122416
-
Optimization of CAMD Techniques 3. Virtual Screening Enrichment Studies: A Help or Hindrance in Tool Selection?
-
Good, A. C.; Oprea, T. I. Optimization of CAMD Techniques 3. Virtual Screening Enrichment Studies: A Help or Hindrance in Tool Selection? J. Comput.-Aided Mol. Des. 2008, 22, 169-178
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, pp. 169-178
-
-
Good, A.C.1
Oprea, T.I.2
-
14
-
-
1642310340
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening
-
DOI 10.1021/jm030644s
-
Halgren, T. A.; Murphy, R. B.; Friesner, R. A.; Beard, H. S.; Frye, L. L.; Pollard, W. T.; Banks, J. L. Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening J. Med. Chem. 2004, 47, 1750-1759 (Pubitemid 38380918)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1750-1759
-
-
Halgren, T.A.1
Murphy, R.B.2
Friesner, R.A.3
Beard, H.S.4
Frye, L.L.5
Pollard, W.T.6
Banks, J.L.7
-
15
-
-
34250892548
-
EHiTS: A new fast, exhaustive flexible ligand docking system
-
DOI 10.1016/j.jmgm.2006.06.002, PII S1093326306000994
-
Zsoldos, Z.; Reid, D.; Simon, A.; Sadjad, S. B.; Johnson, A. P. eHiTS: A New Fast, Exhaustive Flexible Ligand Docking System J. Mol. Graphics Modell. 2007, 26, 198-212 (Pubitemid 46977244)
-
(2007)
Journal of Molecular Graphics and Modelling
, vol.26
, Issue.1
, pp. 198-212
-
-
Zsoldos, Z.1
Reid, D.2
Simon, A.3
Sadjad, S.B.4
Johnson, A.P.5
-
17
-
-
0030943408
-
Selecting optimally diverse compounds from structure databases: A validation study of two-dimensional and three-dimensional molecular descriptors
-
DOI 10.1021/jm960352+
-
Matter, H. Selecting Optimally Diverse Compounds from Structure Databases: A Validation Study of Two-Dimensional and Three-Dimensional Molecular Descriptors J. Med. Chem. 1997, 40, 1219-1229 (Pubitemid 27175101)
-
(1997)
Journal of Medicinal Chemistry
, vol.40
, Issue.8
, pp. 1219-1229
-
-
Matter, H.1
-
18
-
-
77957222180
-
Rapid Context-Dependent Ligand Desolvation in Molecular Docking
-
Mysinger, M. M.; Shoichet, B. K. Rapid Context-Dependent Ligand Desolvation in Molecular Docking J. Chem. Inf. Model. 2010, 50, 1561-1573
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 1561-1573
-
-
Mysinger, M.M.1
Shoichet, B.K.2
-
19
-
-
4444221565
-
UCSF Chimera-A Visualization System for Exploratory Research and Analysis
-
Pettersen, E. F.; Goddard, T. D.; Huang, C. C.; Couch, G. S.; Greenblatt, D. M.; Meng, E. C.; Ferrin, T. E. UCSF Chimera-A Visualization System for Exploratory Research and Analysis J. Comput. Chem. 2004, 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
20
-
-
0036667731
-
Rotamer Libraries in the 21st Century
-
Dunbrack, R. L. Rotamer Libraries in the 21st Century Curr. Opin. Struct. Biol. 2002, 12, 431-440
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 431-440
-
-
Dunbrack, R.L.1
-
21
-
-
33745359822
-
The Blue Obelisk-Interoperability in Chemical Informatics
-
Guha, R.; Howard, M.; Hutchison, G.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. The Blue Obelisk-Interoperability in Chemical Informatics J. Chem. Inf. Model. 2006, 46, 991-998
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 991-998
-
-
Guha, R.1
Howard, M.2
Hutchison, G.3
Murray-Rust, P.4
Rzepa, H.5
Steinbeck, C.6
Wegner, J.7
Willighagen, E.8
|