-
1
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
10.1038/nrg1272, 14735121
-
Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5:101-113. 10.1038/nrg1272, 14735121.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
2
-
-
0035656416
-
Network dynamics and cell physiology
-
10.1038/35103078, 11733770
-
Tyson JJ, Chen AK, Novak B. Network dynamics and cell physiology. Nat Rev Mol Cell Biol 2001, 2:908-916. 10.1038/35103078, 11733770.
-
(2001)
Nat Rev Mol Cell Biol
, vol.2
, pp. 908-916
-
-
Tyson, J.J.1
Chen, A.K.2
Novak, B.3
-
3
-
-
0037136555
-
Robustness of the BMP morphogen gradient in Drosophila embryonic patterning
-
10.1038/nature01061, 12239569
-
Eldar A, Dorfman R, Weiss D, Ashe H, Shilo B, Barkai N. Robustness of the BMP morphogen gradient in Drosophila embryonic patterning. Nature 2002, 419:304-308. 10.1038/nature01061, 12239569.
-
(2002)
Nature
, vol.419
, pp. 304-308
-
-
Eldar, A.1
Dorfman, R.2
Weiss, D.3
Ashe, H.4
Shilo, B.5
Barkai, N.6
-
4
-
-
0037686112
-
The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes
-
10.1016/S0022-5193(03)00035-3, 12782112
-
Albert R, Othmer HG. The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes. J Theor Biol 2003, 223:1-18. 10.1016/S0022-5193(03)00035-3, 12782112.
-
(2003)
J Theor Biol
, vol.223
, pp. 1-18
-
-
Albert, R.1
Othmer, H.G.2
-
5
-
-
27144450537
-
Less is more in Modeling Large Genetic Networks
-
10.1126/science.1119959, 16239464
-
Bornholdt S. Less is more in Modeling Large Genetic Networks. Science 2005, 310:449-451. 10.1126/science.1119959, 16239464.
-
(2005)
Science
, vol.310
, pp. 449-451
-
-
Bornholdt, S.1
-
6
-
-
0037376655
-
Sniffers, buffers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
-
10.1016/S0955-0674(03)00017-6, 12648679
-
Tyson JJ, Chen JC, Novak B. Sniffers, buffers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr Opin Cell Biol 2003, 15:221-231. 10.1016/S0955-0674(03)00017-6, 12648679.
-
(2003)
Curr Opin Cell Biol
, vol.15
, pp. 221-231
-
-
Tyson, J.J.1
Chen, J.C.2
Novak, B.3
-
7
-
-
34948840834
-
Ensemble modeling for analysis of cell signaling dynamics
-
10.1038/nbt1330, 17846631
-
Kuepfer L, Peter M, Sauer U, Stelling J. Ensemble modeling for analysis of cell signaling dynamics. Nat Biotechnol 2007, 25:1001-1006. 10.1038/nbt1330, 17846631.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1001-1006
-
-
Kuepfer, L.1
Peter, M.2
Sauer, U.3
Stelling, J.4
-
8
-
-
13744259954
-
Similar network activity from disparate circuit parameters
-
10.1038/nn1352, 15558066
-
Prinz AA, Bucher D, Marder E. Similar network activity from disparate circuit parameters. Nat Neurosci 2004, 7:1345-1352. 10.1038/nn1352, 15558066.
-
(2004)
Nat Neurosci
, vol.7
, pp. 1345-1352
-
-
Prinz, A.A.1
Bucher, D.2
Marder, E.3
-
9
-
-
35748977901
-
Universally Sloppy Parameter Sensitivities in Systems Biology Models
-
10.1371/journal.pcbi.0030189, 2000971, 17922568
-
Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP. Universally Sloppy Parameter Sensitivities in Systems Biology Models. PLoS Comput Biol 2007, 3:1871-1877. 10.1371/journal.pcbi.0030189, 2000971, 17922568.
-
(2007)
PLoS Comput Biol
, vol.3
, pp. 1871-1877
-
-
Gutenkunst, R.N.1
Waterfall, J.J.2
Casey, F.P.3
Brown, K.S.4
Myers, C.R.5
Sethna, J.P.6
-
10
-
-
3442878412
-
Modular analysis of signal transduction networks
-
Saez-Rodriguez J, Kremling A, Conzelmann H, Bettenbrock K, Gilles ED. Modular analysis of signal transduction networks. IEEE Contr Syst Mag 2004, 24:35-52.
-
(2004)
IEEE Contr Syst Mag
, vol.24
, pp. 35-52
-
-
Saez-Rodriguez, J.1
Kremling, A.2
Conzelmann, H.3
Bettenbrock, K.4
Gilles, E.D.5
-
11
-
-
33746381191
-
An algorithmic method for reducing conductance-based neuron models
-
10.1007/s00422-006-0076-6, 16804733
-
Sorensen ME, DeWeerth SP. An algorithmic method for reducing conductance-based neuron models. Biol Cybern 2006, 95:185-192. 10.1007/s00422-006-0076-6, 16804733.
-
(2006)
Biol Cybern
, vol.95
, pp. 185-192
-
-
Sorensen, M.E.1
DeWeerth, S.P.2
-
12
-
-
55549143637
-
The transition from differential equations to Boolean networks: a case study in simplifying a regulatory network model
-
10.1016/j.jtbi.2008.07.020, 18692073
-
Davidich M, Bornholdt S. The transition from differential equations to Boolean networks: a case study in simplifying a regulatory network model. J Theor Biol 2008, 255:269-277. 10.1016/j.jtbi.2008.07.020, 18692073.
-
(2008)
J Theor Biol
, vol.255
, pp. 269-277
-
-
Davidich, M.1
Bornholdt, S.2
-
13
-
-
40749158005
-
Complexity reduction of biochemical rate expressions
-
10.1093/bioinformatics/btn035, 18267948
-
Schmidt H, Madsen MF, Danø S, Cedersund G. Complexity reduction of biochemical rate expressions. Bioinformatics 2008, 24(6):848-854. 10.1093/bioinformatics/btn035, 18267948.
-
(2008)
Bioinformatics
, vol.24
, Issue.6
, pp. 848-854
-
-
Schmidt, H.1
Madsen, M.F.2
Danø, S.3
Cedersund, G.4
-
14
-
-
61849185339
-
Robust simplifications of multiscale biochemical networks
-
Radulescu O, Gorban AN, Zinovyev A, Lilienbaum A. Robust simplifications of multiscale biochemical networks. BMC Syst Biol 2008, 2(86).
-
(2008)
BMC Syst Biol
, vol.2
, Issue.86
-
-
Radulescu, O.1
Gorban, A.N.2
Zinovyev, A.3
Lilienbaum, A.4
-
15
-
-
62649128117
-
Deconstructing the core dynamics from a complex time-lagged regulatory biological circuit
-
10.1049/iet-syb.2007.0028, 19292565
-
Eriksson O, Zhou B, Björkegren J, Tegnér J. Deconstructing the core dynamics from a complex time-lagged regulatory biological circuit. IET Syst Biol 2009, 3:113-129. 10.1049/iet-syb.2007.0028, 19292565.
-
(2009)
IET Syst Biol
, vol.3
, pp. 113-129
-
-
Eriksson, O.1
Zhou, B.2
Björkegren, J.3
Tegnér, J.4
-
16
-
-
66149151035
-
Internal coarse-graining of molecular systems
-
10.1073/pnas.0809908106, 2672529, 19346467
-
Feret J, Danos V, Krivine J, Harmer R, Fontana W. Internal coarse-graining of molecular systems. Proc Natl Acad Sci USA 2009, 106:6453-8. 10.1073/pnas.0809908106, 2672529, 19346467.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 6453-6458
-
-
Feret, J.1
Danos, V.2
Krivine, J.3
Harmer, R.4
Fontana, W.5
-
17
-
-
0032025439
-
Simplification of Mathematical Models of Chemical Reaction Systems
-
10.1021/cr950223l, 11848905
-
Okino MS, Mavrovouniotis ML. Simplification of Mathematical Models of Chemical Reaction Systems. Chem Rev 1998, 98:391-408. 10.1021/cr950223l, 11848905.
-
(1998)
Chem Rev
, vol.98
, pp. 391-408
-
-
Okino, M.S.1
Mavrovouniotis, M.L.2
-
18
-
-
70449514562
-
Hybrid stochastic simplifications for multiscale gene networks
-
Crudu A, Debussche A, Radulescu O. Hybrid stochastic simplifications for multiscale gene networks. BMC Syst Biol 2009, 3(89)::.
-
(2009)
BMC Syst Biol
, vol.3
, Issue.89
-
-
Crudu, A.1
Debussche, A.2
Radulescu, O.3
-
19
-
-
0035579883
-
Mathematical model of the cell division cycle of fission yeast
-
10.1063/1.1345725, 12779461
-
Novak B, Pataki Z, Ciliberto A, Tyson JJ. Mathematical model of the cell division cycle of fission yeast. Chaos 2001, 11:277-286. 10.1063/1.1345725, 12779461.
-
(2001)
Chaos
, vol.11
, pp. 277-286
-
-
Novak, B.1
Pataki, Z.2
Ciliberto, A.3
Tyson, J.J.4
-
20
-
-
0002807631
-
Hitchhiker's Guide to Sensitivity Analysis
-
Chichester, UK: John Wiley & Sons Ltd, Saltelli A, Chan K, Scott EM
-
Campolongo F, Saltelli A, Sorensen T, Tarantolo S. Hitchhiker's Guide to Sensitivity Analysis. Sensitivity Analysis 2000, Chichester, UK: John Wiley & Sons Ltd, Saltelli A, Chan K, Scott EM.
-
(2000)
Sensitivity Analysis
-
-
Campolongo, F.1
Saltelli, A.2
Sorensen, T.3
Tarantolo, S.4
-
21
-
-
67649259165
-
Computational disease modeling - fact or fiction?
-
Tegnér J, Compte A, Auffray C, An G, Cedersund G, Clermont G, Gutkin B, Oltvai Z, Stephan K, Thomas R, Villoslada P. Computational disease modeling - fact or fiction?. BMC Syst Biol 2009, 3(56).
-
(2009)
BMC Syst Biol
, vol.3
, Issue.56
-
-
Tegnér, J.1
Compte, A.2
Auffray, C.3
An, G.4
Cedersund, G.5
Clermont, G.6
Gutkin, B.7
Oltvai, Z.8
Stephan, K.9
Thomas, R.10
Villoslada, P.11
-
22
-
-
77953381289
-
Bridging the gap between systems biology and medicine
-
10.1186/gm88, 2768995, 19754960
-
Clermont G, Auffray C, Moreau Y, Rocke D, Dalevi D, Dubhashi D, Marshall D, Raasch P, Dehne F, Provero P, Tegner J, Aronow B, Langston M, M B. Bridging the gap between systems biology and medicine. Genome Med 2009, 1(9):88. 10.1186/gm88, 2768995, 19754960.
-
(2009)
Genome Med
, vol.1
, Issue.9
, pp. 88
-
-
Clermont, G.1
Auffray, C.2
Moreau, Y.3
Rocke, D.4
Dalevi, D.5
Dubhashi, D.6
Marshall, D.7
Raasch, P.8
Dehne, F.9
Provero, P.10
Tegner, J.11
Aronow, B.12
Langston, M.13
M, B.14
-
23
-
-
0036905483
-
The dynamics of cell cycle regulation
-
10.1002/bies.10191, 12447975
-
Tyson JJ, Csikasz-Nagy A, Novak B. The dynamics of cell cycle regulation. BioEssays 2002, 24:1095-1109. 10.1002/bies.10191, 12447975.
-
(2002)
BioEssays
, vol.24
, pp. 1095-1109
-
-
Tyson, J.J.1
Csikasz-Nagy, A.2
Novak, B.3
-
24
-
-
58549110646
-
How to deal with large models?
-
Hlavacek W. How to deal with large models?. Mol Syst Biol 2009, 5(240).
-
(2009)
Mol Syst Biol
, vol.5
, Issue.240
-
-
Hlavacek, W.1
|