NMR basis for interprotein electron transfer gating between cytochrome c and cytochrome c oxidase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 30, 2011, Pages 12271-12276

  Sakamoto, Koichi ^a   Kamiya, Masakatsu ^a   Imai, Mizue ^a   Shinzawa Itoh, Kyoko ^b   Uchida, Takeshi ^a   Kawano, Keiichi ^a   Yoshikawa, Shinya ^b   Ishimori, Koichiro ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b UNIVERSITY OF HYOGO   (Japan)

Author keywords

ET complex; Interaction site; Isotope edited NMR; Redox dependent interaction; Unidirectional ET

Indexed keywords

CYTOCHROME C; CYTOCHROME C OXIDASE; HEME;

AMINO TERMINAL SEQUENCE; ARTICLE; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; ELECTRON TRANSPORT; HETERONUCLEAR SINGLE QUANTUM COHERENCE; NUCLEAR MAGNETIC RESONANCE; OXIDATION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; RESPIRATORY CHAIN;

ANIMALS; BINDING SITES; CATTLE; CYTOCHROMES C; ELECTRON TRANSPORT; ELECTRON TRANSPORT COMPLEX IV; HUMANS; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXIDATION-REDUCTION; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS;

MAMMALIA;

EID: 79961078111     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1108320108     Document Type: Article

References (34)

1. Pettigrew GW, Moore GR (1987) Cytochrome c - Biological Aspects (Springer-Verlag, Berlin).
2. Zhen Y, Hoganson CW, Babcock GT, Ferguson-Miller S (1999) Definition of the interaction domain for Cytochrome c on Cytochrome c oxidase I. J Biol Chem 274:38032-38041.
3. Roberts VA, Pique ME (1999) Definition of the interaction domain for Cytochrome c on Cytochrome c oxidase. III. J Biol Chem 274:38051-38060.
4. Ferguson-Miller S, Brautigan DL, Margoliash E (1978) Definition of cytochrome c binding domains by chemical modification. III. Kinetics of reaction of carboxydinitrophenyl cytochromes c with cytochrome c oxidase. J Biol Chem 253:149-159.
5. Flok D, Helms V (2002) Protein-protein docking of electron transfer complexes: cytochrome c oxidase and cytochrome c. Proteins 47:75-85.
6. Hoffman BM, Ratner MA (1987) Gated electron transfer: when are observed rates controlled by conformational interconversion? J Am Chem Soc 109:6237-6243.
7. Sumi H, Marcus RA (1986) Dynamical effects in electron transfer reactions. J Chem Phys 84:4894-4914.
8. Kuznetsov VY, Poulos TL, Sevrioukova IF (2006) Putidaredoxin-to- cytochrome P450cam electron transfer: differences between the two reductive steps required for catalysis. Biochemistry 45:11934-11944. (Pubitemid 44497820)
9. Michel B, Proudfoot AEI, Wallace CJA, Bosshard HR (1989) The cytochrome c oxidase-cytochrome c complex: spectroscopic analysis of conformational changes in the protein-protein interaction domain. Biochemistry 28:456-462.
10. Niki K, et al. (2003) Coupling to lysine-13 promotes electron tunneling through carboxylate-terminated alkanethiol self-assembled monolayers to cytochrome c. J Phys Chem B 107:9947-9949.
11. Winkler JR, Malmström BG, Gray HB (1995) Rapid electron injection into multisite metalloproteins: intramolecular electron transfer in cytochrome oxidase. Biophys Chem 54:199-209.
12. Banci L, et al. (1997) Solution structure of oxidized horse heart cytochrome c. Biochemistry 36:9867-9877. (Pubitemid 27364698)
13. Banci L, Bertini I, Huber JG, Spyroulias GA, Turano P (1999) Solution structure of reduced horse heart cytochrome c. J Biol Inorg Chem 4:21-31. (Pubitemid 29113809)
14. Muramoto K, et al. (2007) A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase. Proc Natl Acad Sci USA 104:7881-7886. (Pubitemid 47185845)
15. 2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump. Proc Natl Acad Sci USA 106:2165-2169.
16. Jeng WY, Chen CY, Chang HC, Chuang WJ (2002) Expression and characterization of recombinant human cytochrome c in E. coli. J Bioenerg Biomembr 34:423-431.
17. Mulder FAA, Schipper D, Bott R, Boelens R (1999) Altered flexibility in the substrate-binding site of related native and engineered high-alkaline Bacillus subtilisins. J Mol Biol 292:111-123. (Pubitemid 29425657)
18. Wienk H, et al. (2003) Interaction of cytochrome c with cytochrome c oxidase: an NMR study on two soluble fragments derived from Paracoccus denitrificans. Biochemistry 42:6005-6012. (Pubitemid 36605103)
19. Basdevant N, Weinstein H, Ceruso M (2006) Thermodynamic basis for promiscuity and selectivity in protein-protein interactions: PDZ domains, a case study. J Am Chem Soc 128:12766-12777. (Pubitemid 44527753)
20. Guo M, Bhaskar B, Li H, Barrows TP, Poulos TL (2004) Crystal structure and characterization of a cytochrome c peroxidase-cytochrome c site-specific cross-link. Proc Natl Acad Sci USA 101:5940-5945. (Pubitemid 38520507)
21. Volkov AN, Bashir Q, Worrall JAR, Ubbink M (2009) Binding hot spot in the weak protein complex of physiological redox partners yeast cytochrome c and cytochrome c peroxidase. J Mol Biol 385:1003-1013.
22. Yoshikawa S, et al. (1998) Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase. Science 280:1723-1729. (Pubitemid 28283490)
23. Smith HT, Staudenmayer N, Millett F (1977) Use of specific lysine modifications to locate the reaction site of cytochrome c with cytochrome oxidase. Biochemistry 16:4971-4974. (Pubitemid 8222185)
24. Pelletier H, Kraut J (1992) Crystal structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c. Science 258:1748-1755. (Pubitemid 23087339)
25. 1H] heteronuclear NMR spectroscopy. Biochemistry 40:7069-7076.
26. Bloch D, et al. (2004) The catalytic cycle of cytochrome c oxidase is not the sum of its two halves. Proc Natl Acad Sci USA 101:529-533. (Pubitemid 38084670)
27. - Stoichiometry in mitochondrial cytochrome c oxidase: influence of the rate of electron flow and transmembrane. Biochemistry 35:10800-10806.
28. Witt H, Malatesta F, Nicoletti F, Brunori M, Ludwig B (1998) Tryptophan 121 of subunit II is the electron entry site to cytochrome-c oxidase in Paracoccus denitrificans. J Biol Chem 273:5132-5136.
29. Bertini I, Cavallaro G, Rosato A (2005) A structural model for the adduct between cytochrome c and cytochrome c oxidase. J Biol Inorg Chem 10:613-624. (Pubitemid 41673373)
30. Aoki M, Ishimori K, Morishima I (1998) NMR studies of putidaredoxin: associations of putidaredoxin with NADH-putidaredoxin reductase and cytochrome P450cam. Biochim Biophys Acta 1386:168-178. (Pubitemid 29333228)
31. 2: reaction center electron transfer complex from Rhodobacter sphaeroides. J Mol Biol 319:501-515.
32. 15N NMR relaxation measurements. Biochem Biophys Res Commun 398:231-236.
33. 1H NMR chemical shifts in proteins. J Am Chem Soc 105:5948-5949.
34. Delaglio F, et al. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277-293.