-
1
-
-
14844309689
-
The latitudinal cline in the In(3R)Payne inversion polymorphism has shifted in the last 20 years in Australian Drosophila melanogaster populations
-
DOI 10.1111/j.1365-294X.2005.02445.x
-
Anderson AR, Hoffmann AA, McKechnie SW, Umina PA, Weeks AR. 2005. The latitudinal cline in the In (3R) Payne inversion polymorphism has shifted in the last 20 years in Australian Drosophila melanogaster populations. Mol Ecol. 14:851-858. (Pubitemid 40346476)
-
(2005)
Molecular Ecology
, vol.14
, Issue.3
, pp. 851-858
-
-
Anderson, A.R.1
Hoffmann, A.A.2
Mckechnie, S.W.3
Umina, P.A.4
Weeks, A.R.5
-
4
-
-
5344236813
-
Cold adaptation in geographical populations of Drosophila melanogaster: Phenotypic plasticity is more important than genetic variability
-
DOI 10.1111/j.0269-8463.2004.00904.x
-
Ayrinhac A, Debat V, Gibert P, Kister AG, Legout H, Moreteau B, Vergilino R, David JR. 2004. Cold adaptation in geographical populations of Drosophila melanogaster: phenotypic plasticity is more important than genetic variability. Funct Ecol. 18:700-706. (Pubitemid 39348394)
-
(2004)
Functional Ecology
, vol.18
, Issue.5
, pp. 700-706
-
-
Ayrinhac, A.1
Debat, V.2
Gibert, P.3
Kister, A.-G.4
Legout, H.5
Moreteau, B.6
Vergilino, R.7
David, J.R.8
-
5
-
-
0036906987
-
Retroposed new genes out of the X in Drosophila
-
DOI 10.1101/gr.6049
-
Betrán E, Thornton K, Long M. 2002. Retroposed new genes out of the X in Drosophila. Genome Res. 12:1854-1859. (Pubitemid 35469934)
-
(2002)
Genome Research
, vol.12
, Issue.12
, pp. 1854-1859
-
-
Betran, E.1
Thornton, K.2
Long, M.3
-
6
-
-
0033990096
-
DNASTAR's Lasergene sequence analysis software
-
Burland TG. 2000. DNASTAR's Lasergene sequence analysis software. Methods Mol Biol. 132:71-91.
-
(2000)
Methods Mol Biol.
, vol.132
, pp. 71-91
-
-
Burland, T.G.1
-
7
-
-
77951247315
-
Crystal structure of human senescence marker protein 30: Insights linking structural, enzymatic, and physiological functions
-
Chakraborti S, Bahnson BJ. 2010. Crystal structure of human senescence marker protein 30: insights linking structural, enzymatic, and physiological functions. Biochemistry 49:3436-3444.
-
(2010)
Biochemistry
, vol.49
, pp. 3436-3444
-
-
Chakraborti, S.1
Bahnson, B.J.2
-
8
-
-
84954358029
-
The first crystal structure of gluconolactonase important in the glucose secondary metabolic pathways
-
Chen CN, Chin KH, Wang AHJ, Chou SH. 2008. The first crystal structure of gluconolactonase important in the glucose secondary metabolic pathways. J Mol Biol. 384:604-614.
-
(2008)
J Mol Biol.
, vol.384
, pp. 604-614
-
-
Chen, C.N.1
Chin, K.H.2
Wang, A.H.J.3
Chou, S.H.4
-
9
-
-
0028066078
-
Cold-shock and chilling tolerance in Drosophila
-
DOI 10.1016/0022-1910(94)90093-0
-
Chen CP, Walker VK. 1994. Cold-shock and chilling tolerance in Drosophila. J Insect Physiol. 40:661-669. (Pubitemid 2121625)
-
(1994)
Journal of Insect Physiology
, vol.40
, Issue.8
, pp. 661-669
-
-
Chen Cheng Ping1
Walker, V.K.2
-
10
-
-
34249804498
-
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
-
DOI 10.1038/ng2049, PII NG2049
-
Chintapalli VR, Wang J, Dow JAT. 2007. Using FlyAtlas to identify better Drosophila models of human disease. Nat Genet. 39:715-720. (Pubitemid 46848596)
-
(2007)
Nature Genetics
, vol.39
, Issue.6
, pp. 715-720
-
-
Chintapalli, V.R.1
Wang, J.2
Dow, J.A.T.3
-
11
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
DOI 10.1038/nature06341, PII NATURE06341
-
Clark AG, Eisen MB, Smith DR, et al. (417 co-authors). 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218. (Pubitemid 351972300)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
Oliver, B.5
Markow, T.A.6
Kaufman, T.C.7
Kellis, M.8
Gelbart, W.9
Iyer, V.N.10
Pollard, D.A.11
Sackton, T.B.12
Larracuente, A.M.13
Singh, N.D.14
Abad, J.P.15
Abt, D.N.16
Adryan, B.17
Aguade, M.18
Akashi, H.19
Anderson, W.W.20
Aquadro, C.F.21
Ardell, D.H.22
Arguello, R.23
Artieri, C.G.24
Barbash, D.A.25
Barker, D.26
Barsanti, P.27
Batterham, P.28
Batzoglou, S.29
Begun, D.30
Bhutkar, A.31
Blanco, E.32
Bosak, S.A.33
Bradley, R.K.34
Brand, A.D.35
Brent, M.R.36
Brooks, A.N.37
Brown, R.H.38
Butlin, R.K.39
Caggese, C.40
Calvi, B.R.41
Bernardo De Carvalho, A.42
Caspi, A.43
Castrezana, S.44
Celniker, S.E.45
Chang, J.L.46
Chapple, C.47
Chatterji, S.48
Chinwalla, A.49
Civetta, A.50
Clifton, S.W.51
Comeron, J.M.52
Costello, J.C.53
Coyne, J.A.54
Daub, J.55
David, R.G.56
Delcher, A.L.57
Delehaunty, K.58
Do, C.B.59
Ebling, H.60
Edwards, K.61
Eickbush, T.62
Evans, J.D.63
Filipski, A.64
Findeiss, S.65
Freyhult, E.66
Fulton, L.67
Fulton, R.68
Garcia, A.C.L.69
Gardiner, A.70
Garfield, D.A.71
Garvin, B.E.72
Gibson, G.73
Gilbert, D.74
Gnerre, S.75
Godfrey, J.76
Good, R.77
Gotea, V.78
Gravely, B.79
Greenberg, A.J.80
Griffiths-Jones, S.81
Gross, S.82
Guigo, R.83
Gustafson, E.A.84
Haerty, W.85
Hahn, M.W.86
Halligan, D.L.87
Halpern, A.L.88
Halter, G.M.89
Han, M.V.90
Heger, A.91
Hillier, L.92
Hinrichs, A.S.93
Holmes, I.94
Hoskins, R.A.95
Hubisz, M.J.96
Hultmark, D.97
Huntley, M.A.98
Jaffe, D.B.99
more..
-
12
-
-
54949112042
-
How insects survive the cold: Molecular mechanisms-a review
-
Clark MS, Worland RM. 2008. How insects survive the cold: molecular mechanisms-a review. J Comp Physiol B. 178:917-933.
-
(2008)
J Comp Physiol B
, vol.178
, pp. 917-933
-
-
Clark, M.S.1
Worland, R.M.2
-
13
-
-
77954498909
-
Genetic variation in senescence marker protein-30 is associated with natural variation in cold tolerance in Drosophila
-
Clowers KJ, Lyman RF, Mackay TFC, Morgan TJ. 2010. Genetic variation in senescence marker protein-30 is associated with natural variation in cold tolerance in Drosophila. Genet Res. 92:103-113.
-
(2010)
Genet Res.
, vol.92
, pp. 103-113
-
-
Clowers, K.J.1
Lyman, R.F.2
Mackay, T.F.C.3
Morgan, T.J.4
-
14
-
-
0043166468
-
Structure and evolution of the luciferin-regenerating enzyme (LRE) gene from the firefly Photinus pyralis
-
DOI 10.1046/j.1365-2583.2003.00418.x
-
Day JC, Bailey MJ. 2003. Structure and evolution of the luciferinregenerating enzyme (LRE) gene from the firefly Photinus pyralis. Insect Mol Biol. 12:365-372. (Pubitemid 36933197)
-
(2003)
Insect Molecular Biology
, vol.12
, Issue.4
, pp. 365-372
-
-
Day, J.C.1
Bailey, M.J.2
-
16
-
-
14644430471
-
ProbCons: Probabilistic consistency-based multiple sequence alignment
-
DOI 10.1101/gr.2821705
-
Do CB, Mahabhashyam MS, Brudno M, Batzoglou S. 2005. ProbCons: probabilistic consistency-based multiple sequence alignment. Genome Res. 15:330-340. (Pubitemid 40309398)
-
(2005)
Genome Research
, vol.15
, Issue.2
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.P.2
Brudno, M.3
Batzoglou, S.4
-
17
-
-
0033057848
-
Heat-shock proteins, molecular chaperones, and the stress response
-
Feder ME, Hoffmann GE. 1999. Heat-shock proteins, molecular chaperones, and the stress response. Annu Rev Physiol. 61:243-282.
-
(1999)
Annu Rev Physiol.
, vol.61
, pp. 243-282
-
-
Feder, M.E.1
Hoffmann, G.E.2
-
18
-
-
38549146894
-
The Pfam protein families database
-
DOI 10.1093/nar/gkm960
-
Finn RD, Tate J, Mistry J, et al. (11 co-authors). 2008. The Pfam protein families database. Nucleic Acids Res. 36:D281-D288. (Pubitemid 351149737)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.-R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.L.10
Bateman, A.11
-
19
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545. (Pubitemid 29177561)
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.-L.5
Postlethwait, J.6
-
20
-
-
0033534765
-
Senescence marker protein-30 (SMP30): Structure and biological function
-
DOI 10.1006/bbrc.1998.9841
-
Fujita T. 1999. Senescence marker protein-30 (SMP30): structure and biological function. Biochem Biophys Res Commún. 254:1-4. (Pubitemid 29292005)
-
(1999)
Biochemical and Biophysical Research Communications
, vol.254
, Issue.1
, pp. 1-4
-
-
Fujita, T.1
-
21
-
-
0036942922
-
The evolution of engrailed genes after duplication and speciation events
-
Gibert JM. 2002. The evolution of engrailed genes after duplication and speciation events. Dev Genes Evol. 212:307-318.
-
(2002)
Dev Genes Evol.
, vol.212
, pp. 307-318
-
-
Gibert, J.M.1
-
22
-
-
0034980470
-
Chill-coma temperature in Drosophila: Effects of developmental temperature, latitude, and phylogeny
-
DOI 10.1086/320429
-
Gibert P, Huey RB. 2001. Chill-coma temperature in Drosophila: effects of developmental temperature, latitude, and phylogeny. Physiol Biochem Zool. 74:429-434. (Pubitemid 32501231)
-
(2001)
Physiological and Biochemical Zoology
, vol.74
, Issue.3
, pp. 429-434
-
-
Gibert, P.1
Huey, R.B.2
-
23
-
-
0034977946
-
Chill-coma tolerance, a major climatic adaptation among drosophila species
-
Gibert P, Moreteau B, Petavy G, Karan D, David JR. 2001. Chill-coma tolerance, a major climatic adaptation among Drosophila species. Evolution. 55:1063-1068. (Pubitemid 32550574)
-
(2001)
Evolution
, vol.55
, Issue.5
, pp. 1063-1068
-
-
Gibert, P.1
Moreteau, B.2
Petavy, G.3
Karan, D.4
David, J.R.5
-
24
-
-
0034089719
-
Expression of Drosophila homologue of senescence marker protein-30 during cold acclimation
-
DOI 10.1016/S0022-1910(99)00221-8, PII S0022191099002218
-
Goto SG. 2000. Expression of Drosophila homologue of senescence marker protein-30 during cold acclimation. J Insect Physiol. 46:1111-1120. (Pubitemid 30398834)
-
(2000)
Journal of Insect Physiology
, vol.46
, Issue.7
, pp. 1111-1120
-
-
Goto, S.G.1
-
25
-
-
0035972766
-
A novel gene that is up-regulated during recovery from cold shock in Drosophila melanogaster
-
DOI 10.1016/S0378-1119(01)00465-6, PII S0378111901004656
-
Goto SG. 2001. A novel gene that is up-regulated during recovery from cold shock in Drosophila melanogaster. Gene. 270:259-264. (Pubitemid 32525823)
-
(2001)
Gene
, vol.270
, Issue.1-2
, pp. 259-264
-
-
Goto, S.G.1
-
26
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
DOI 10.1080/10635150390235520
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704. (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
27
-
-
0036245514
-
Clinal variation in Drosophila serrata for stress resistance and body size
-
DOI 10.1017/S0016672301005523
-
Hallas R, Schiffer M, Hoffmann AA. 2002. Clinal variation in Drosophila serrata for stress resistance and body size. Genet Res. 79:141-148. (Pubitemid 34495617)
-
(2002)
Genetical Research
, vol.79
, Issue.2
, pp. 141-148
-
-
Hallas, R.1
Schiffer, M.2
Hoffmann, A.A.3
-
28
-
-
0036183723
-
Interaction of the anterior fat body protein with the hexamerin receptor in the blowfly Calliphora vicina
-
DOI 10.1046/j.0014-2956.2001.02736.x
-
Hansen IA, Meyer SR, Schafer I, Scheller K. 2002. Interaction of the anterior fat body protein with the hexamerin receptor in the blowfly Calliphora vicina. Eur J Biochem. 269:954-960. (Pubitemid 34175416)
-
(2002)
European Journal of Biochemistry
, vol.269
, Issue.3
, pp. 954-960
-
-
Hansen, I.A.1
Meyer, S.R.2
Schafer, I.3
Scheller, K.4
-
29
-
-
2342569704
-
Structure and evolution of the serum paraoxonase family of detoxifying and anti-atherosclerotic enzymes
-
DOI 10.1038/nsmb767
-
Harel M, Aharoni A, Gaidukov L, et al. (13 co-authors). 2004. Structure and evolution of the serum paraoxonase family of detoxifying and anti-atherosclerotic enzymes. Nat Struct Biol. 11:412-419. (Pubitemid 38568944)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.5
, pp. 412-419
-
-
Harel, M.1
Aharoni, A.2
Gaidukov, L.3
Brumshtein, B.4
Khersonsky, O.5
Meged, R.6
Dvir, H.7
Ravelli, R.B.G.8
McCarthy, A.9
Toker, L.10
Silman, I.11
Sussman, J.L.12
Tawfik, D.S.13
-
30
-
-
0029992278
-
Molecular chaperones in cellular protein folding
-
DOI 10.1038/381571a0
-
Hartl FU. 1996. Molecular chaperones in cellular protein folding. Nature 381:571-580. (Pubitemid 26177472)
-
(1996)
Nature
, vol.381
, Issue.6583
, pp. 571-580
-
-
Hartl, F.U.1
-
31
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
DOI 10.1007/BF02101694
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22:160-174. (Pubitemid 16227864)
-
(1985)
Journal of Molecular Evolution
, vol.22
, Issue.2
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
32
-
-
0036743168
-
Opposing clines for high and low temperature resistance in Drosophila melanogaster
-
Hoffmann AA, Anderson A, Hallas R. 2002. Opposing clines for high and low temperature resistance in Drosophila melanogaster. Ecol Lett. 5:614-618.
-
(2002)
Ecol Lett.
, vol.5
, pp. 614-618
-
-
Hoffmann, A.A.1
Anderson, A.2
Hallas, R.3
-
33
-
-
0037381841
-
Adaptation of Drosophila to temperature extremes: Bringing together quantitative and molecular approaches
-
DOI 10.1016/S0306-4565(02)00057-8
-
Hoffmann AA, Sorensen JG, Loeschcke V. 2003. Adaptation of Drosophila to temperature extremes: bringing together quantitative and molecular approaches. J Therm Biol. 28:175-216. (Pubitemid 36383351)
-
(2003)
Journal of Thermal Biology
, vol.28
, Issue.3
, pp. 175-216
-
-
Hoffmann, A.A.1
Sorensen, J.G.2
Loeschcke, V.3
-
34
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm L, Rosenström P. 2010. Dali server: conservation mapping in 3D. Nucleic Acids Res. 38:545-549.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 545-549
-
-
Holm, L.1
Rosenström, P.2
-
35
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
DOI 10.1098/rspb.1994.0058
-
Hughes AL. 1994. The evolution of functionally novel proteins after gene duplication. Proc R Soc Lond B Biol Sci. 256:119-124. (Pubitemid 24168165)
-
(1994)
Proceedings of the Royal Society B: Biological Sciences
, vol.256
, Issue.1346
, pp. 119-124
-
-
Hughes, A.L.1
-
36
-
-
0036716752
-
Adaptive evolution after gene duplication
-
Hughes AL. 2002. Adaptive evolution after gene duplication. Trends Genet. 18:433-434.
-
(2002)
Trends Genet.
, vol.18
, pp. 433-434
-
-
Hughes, A.L.1
-
37
-
-
69949146773
-
Fundamental evolutionary limits in ecological traits drive Drosophila species distributions
-
Kellermann V, van Heerwaarden B, Sgrò CM, Hoffmann AA. 2009. Fundamental evolutionary limits in ecological traits drive Drosophila species distributions. Science 325:1244-1246.
-
(2009)
Science
, vol.325
, pp. 1244-1246
-
-
Kellermann, V.1
Van Heerwaarden, B.2
Sgrò, C.M.3
Hoffmann, A.A.4
-
38
-
-
4344572118
-
Cold and heat tolerance of drosophilid flies with reference to their latitudinal distributions
-
Kimura MT. 2004. Cold and heat tolerance of drosophilid flies with reference to their latitudinal distributions. Oecologia. 140:442-449. (Pubitemid 39147383)
-
(2004)
Oecologia
, vol.140
, Issue.3
, pp. 442-449
-
-
Kimura, M.T.1
-
39
-
-
33645819801
-
Senescence marker protein 30 functions as gluconolactonase in L-ascorbic acid biosynthesis, and its knockout mice are prone to scurvy
-
Kondo Y, Inai Y, Sato Y, Handa S, Kubo S, Shimokado K, Goto S, Nishikimi M, Maruyama N, Ishigami A. 2006. Senescence marker protein 30 functions as gluconolactonase in L-ascorbic acid biosynthesis, and its knockout mice are prone to scurvy. Proc Natl Acad Sci U S A. 103:5723-5728.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 5723-5728
-
-
Kondo, Y.1
Inai, Y.2
Sato, Y.3
Handa, S.4
Kubo, S.5
Shimokado, K.6
Goto, S.7
Nishikimi, M.8
Maruyama, N.9
Ishigami, A.10
-
41
-
-
69949115558
-
An overview of nested genes in eukaryotic genomes
-
Kumar A. 2009. An overview of nested genes in eukaryotic genomes. Eukaryot Cell. 8:1321-1329.
-
(2009)
Eukaryot Cell
, vol.8
, pp. 1321-1329
-
-
Kumar, A.1
-
42
-
-
34047222664
-
Thermal evolution of gene expression profiles in Drosophila subobscura
-
Laayouni H, Garcia-Franco F, Chavez-Sandoval BE, Trotta V, Beltran S, Corominas M, Santos M. 2007. Thermal evolution of gene expression profiles in Drosophila subobscura. BMC Evol Biol. 7:42.
-
(2007)
BMC Evol Biol.
, vol.7
, pp. 42
-
-
Laayouni, H.1
Garcia-Franco, F.2
Chavez-Sandoval, B.E.3
Trotta, V.4
Beltran, S.5
Corominas, M.6
Santos, M.7
-
43
-
-
65649117685
-
A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J. 2009. A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
44
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch M, Force A. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459-473. (Pubitemid 30045935)
-
(2000)
Genetics
, vol.154
, Issue.1
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
45
-
-
3543079913
-
Dissecting chill coma recovery as a measure of cold resistance: Evidence for a biphasic response in Drosophila melanogaster
-
DOI 10.1016/j.jinsphys.2004.05.004, PII S0022191004000861
-
Macdonald SS, Rako L, Hoffmann AA, Batterham P. 2004. Dissecting chill coma recovery as a measure of cold resistance: evidence for biphasic response in Drosophila melanogaster. J Insect Physiol. 50:695-700. (Pubitemid 39017329)
-
(2004)
Journal of Insect Physiology
, vol.50
, Issue.8
, pp. 695-700
-
-
Macdonald, S.S.1
Rako, L.2
Batterham, P.3
Hoffmann, A.A.4
-
46
-
-
66449119974
-
The effects of selection for cold tolerance on cross-tolerance to other environmental stressors in Drosophila melanogaster
-
MacMillan H, Walsh J, Sinclair B. 2009. The effects of selection for cold tolerance on cross-tolerance to other environmental stressors in Drosophila melanogaster. Insect Sci. 16:263-276.
-
(2009)
Insect Sci.
, vol.16
, pp. 263-276
-
-
MacMillan, H.1
Walsh, J.2
Sinclair, B.3
-
48
-
-
77749277118
-
A clinally varying promoter polymorphism associated with adaptive variation in wing size in Drosophila
-
McKechnie SW, Blacket MJ, Song SV, Rako L, Carroll X, Johnson TK, Jensen LT, Lee SF, Wee CW, Hoffmann AA. 2010. A clinally varying promoter polymorphism associated with adaptive variation in wing size in Drosophila. Mol Ecol. 19:775-784.
-
(2010)
Mol Ecol.
, vol.19
, pp. 775-784
-
-
McKechnie, S.W.1
Blacket, M.J.2
Song, S.V.3
Rako, L.4
Carroll, X.5
Johnson, T.K.6
Jensen, L.T.7
Lee, S.F.8
Wee, C.W.9
Hoffmann, A.A.10
-
49
-
-
73649093539
-
A complex suite of forces drives gene traffic from Drosophila X chromosomes
-
Meisel RP, Han MV, Hahn MW. 2009. A complex suite of forces drives gene traffic from Drosophila X chromosomes. Genome Biol Evol. 1:176-188.
-
(2009)
Genome Biol Evol.
, vol.1
, pp. 176-188
-
-
Meisel, R.P.1
Han, M.V.2
Hahn, M.W.3
-
50
-
-
33644603686
-
Quantitative trait loci for thermotolerance phenotypes in Drosophila melanogaster
-
Morgan TJ, Mackay TF. 2006. Quantitative trait loci for thermotolerance phenotypes in Drosophila melanogaster. Heredity. 96:232-242.
-
(2006)
Heredity
, vol.96
, pp. 232-242
-
-
Morgan, T.J.1
Mackay, T.F.2
-
51
-
-
52649085746
-
Selection for rapid and slow recovery from chill-and heat-coma in Drosophila melanogaster
-
Mori N, Kimura MT. 2008. Selection for rapid and slow recovery from chill-and heat-coma in Drosophila melanogaster. Biol J Linn Soc. 95:72-80.
-
(2008)
Biol J Linn Soc.
, vol.95
, pp. 72-80
-
-
Mori, N.1
Kimura, M.T.2
-
52
-
-
0027328291
-
Chloroplast DNA codon use: Evidence for selection at the psb A locus based on tRNA availability
-
Morton BR. 1993. Chloroplast DNA codon use: evidence for selection at the psb A locus based on tRNA availability. J Mol Evol. 37:273-280. (Pubitemid 23249705)
-
(1993)
Journal of Molecular Evolution
, vol.37
, Issue.3
, pp. 273-280
-
-
Morton, B.R.1
-
53
-
-
0033635942
-
Nucleotide variation at the yellow gene region is not reduced in Drosophila subobscura: A study in relation to chromosomal polymorphism
-
Munté A, Aguadé M, Segarra C. 2000. Nucleotide variation at the yellow gene region is not reduced in Drosophila subobscura: a study in relation to chromosomal polymorphism. Mol Biol Evol. 17:1942-1955.
-
(2000)
Mol Biol Evol.
, vol.17
, pp. 1942-1955
-
-
Munté, A.1
Aguadé, M.2
Segarra, C.3
-
54
-
-
0026671355
-
Structural principles for the propeller assembly of beta-sheets: The preference for seven-fold symmetry
-
Murzin AG. 1992. Structural principles for the propeller assembly of beta-sheets: the preference for seven-fold symmetry. Proteins. 14:191-201.
-
(1992)
Proteins
, vol.14
, pp. 191-201
-
-
Murzin, A.G.1
-
55
-
-
0034029950
-
Identification and characterization of an anterior fat body protein in an insect
-
Nakajima Y, Natori S. 2000. Identification and characterization of an anterior fat body protein in an insect. J Biochem (Tokyo). 127:901-908. (Pubitemid 30317916)
-
(2000)
Journal of Biochemistry
, vol.127
, Issue.5
, pp. 901-908
-
-
Nakajima, Y.1
Natori, S.2
-
56
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R, Yang Z. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936. (Pubitemid 28169008)
-
(1998)
Genetics
, vol.148
, Issue.3
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
57
-
-
53749106146
-
QTL for the thermotolerance effect of heat hardening, knockdown resistance to heat and chill-coma recovery in an intercontinental set of recombinant inbred lines of
-
Norry FM, Scannapieco AC, Sambucetti P, Bertoli CI, Loeschcke V. 2008. QTL for the thermotolerance effect of heat hardening, knockdown resistance to heat and chill-coma recovery in an intercontinental set of recombinant inbred lines of. Drosophila melanogaster. Mol Ecol. 17:4570-4581.
-
(2008)
Drosophila Melanogaster. Mol Ecol.
, vol.17
, pp. 4570-4581
-
-
Norry, F.M.1
Scannapieco, A.C.2
Sambucetti, P.3
Bertoli, C.I.4
Loeschcke, V.5
-
59
-
-
0027327059
-
Pattern of nucleotide substitutions in growth hormone-prolactin gene family: A paradigm for evolution by gene duplication
-
Ohta T. 1993. Pattern of nucleotide substitution in growth hormone-prolactin gene family: a paradigm for evolution by gene duplication. Genetics 134:1271-1276. (Pubitemid 23220048)
-
(1993)
Genetics
, vol.134
, Issue.4
, pp. 1271-1276
-
-
Ohta, T.1
-
60
-
-
0026326815
-
The recruitment of crystallins: New functions precede gene duplication
-
Piatigorsky J, Wistow G. 1991. The recruitment of crystallins: new functions precede gene duplication. Science. 252:1078-1079.
-
(1991)
Science
, vol.252
, pp. 1078-1079
-
-
Piatigorsky, J.1
Wistow, G.2
-
61
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
DOI 10.1093/bioinformatics/bti079
-
Pond SLK, Frost SDW, Muse SV. 2005. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676-679. (Pubitemid 40424796)
-
(2005)
Bioinformatics
, vol.21
, Issue.5
, pp. 676-679
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
Muse, S.V.3
-
62
-
-
33645266346
-
Cold hardening and transcriptional change in Drosophila melanogaster
-
DOI 10.1111/j.1365-2583.2005.00589.x
-
Qin W, Neal SJ, Robertson RM, Westwood JT, Walker VK. 2005. Cold hardening and transcriptional change in Drosophila melanogaster. Insect Mol Biol. 14:607-613. (Pubitemid 44914743)
-
(2005)
Insect Molecular Biology
, vol.14
, Issue.6
, pp. 607-613
-
-
Qin, W.1
Neal, S.J.2
Robertson, R.M.3
Westwood, J.T.4
Walker, V.K.5
-
63
-
-
30844435057
-
Complexity of the cold acclimation response in Drosophila melanogaster
-
DOI 10.1016/j.jinsphys.2005.09.007, PII S0022191005002040
-
Rako L, Hoffmann AA. 2006. Complexity of the cold acclimation response in Drosophila melanogaster. J Insect Physiol. 52:94-104. (Pubitemid 43106901)
-
(2006)
Journal of Insect Physiology
, vol.52
, Issue.1
, pp. 94-104
-
-
Rako, L.1
Hoffmann, A.A.2
-
64
-
-
77958514257
-
Positive selection differs between protein secondary structure elements in Drosophila
-
Ridout KE, Dixon CJ, Filatov DA. 2010. Positive selection differs between protein secondary structure elements in Drosophila. Genome Biol Evol. 2:166-179.
-
(2010)
Genome Biol Evol.
, vol.2
, pp. 166-179
-
-
Ridout, K.E.1
Dixon, C.J.2
Filatov, D.A.3
-
66
-
-
84987299791
-
Nucleotide polymorphism at the rp49 region of Drosophila pseudoobscura: Lack of geographic subdivision within chromosomal arrangements in Europe
-
Rozas J, Segarra C, Zapata C, Alvarez GA, Aguadé M. 1995. Nucleotide polymorphism at the rp49 region of Drosophila pseudoobscura: lack of geographic subdivision within chromosomal arrangements in Europe. J Evol Biol. 8:355-367.
-
(1995)
J Evol Biol.
, vol.8
, pp. 355-367
-
-
Rozas, J.1
Segarra, C.2
Zapata, C.3
Alvarez, G.A.4
Aguadé, M.5
-
67
-
-
36048992332
-
OLIGO 7. Primer analysis software
-
Yuryev A, editor, Totowa NJ: Humana Press Inc
-
Rychlik W. 2007. OLIGO 7. Primer analysis software. In: Yuryev A, editor. PCR primer design. Methods in molecular biology Vol. 402. Totowa (NJ): Humana Press Inc. p. 35-59.
-
(2007)
PCR Primer Design. Methods in Molecular Biology
, vol.402
, pp. 35-59
-
-
Rychlik, W.1
-
68
-
-
0034972434
-
Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris
-
DOI 10.1016/S0969-2126(01)00610-4, PII S0969221601006014
-
Scharff EI, Koepke J, Fritzsch G, Lucke C, Ruterjans H. 2001. Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris. Structure 9:493-502. (Pubitemid 32577101)
-
(2001)
Structure
, vol.9
, Issue.6
, pp. 493-502
-
-
Scharff, E.I.1
Koepke, J.2
Fritzsch, G.3
Lucke, C.4
Ruterjans, H.5
-
69
-
-
0024116811
-
"Silent"sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
-
Shields DC, Sharp PM, Higgins DG. 1988. "Silent"sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol Biol Evol. 5:704-716.
-
(1988)
Mol Biol Evol.
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
-
70
-
-
0030473920
-
Gen(om)e duplications in the evolution of early vertebrates
-
DOI 10.1016/S0959-437X(96)80026-8
-
Sidow A. 1996. Gen (om) e duplications in the evolution of early vertebrates. Curr Opin Genet Dev. 6:715-722. (Pubitemid 27010631)
-
(1996)
Current Opinion in Genetics and Development
, vol.6
, Issue.6
, pp. 715-722
-
-
Sidow, A.1
-
71
-
-
34447643084
-
Gene transcription during exposure to, and recovery from, cold and desiccation stress in Drosophila melanogaster
-
DOI 10.1111/j.1365-2583.2007.00739.x
-
Sinclair BJ, Gibbs AG, Roberts SP. 2007. Gene transcription during exposure to, and recovery from, cold and desiccation stress in Drosophila melanogaster. Insect Mol Biol. 16:435-443. (Pubitemid 47094272)
-
(2007)
Insect Molecular Biology
, vol.16
, Issue.4
, pp. 435-443
-
-
Sinclair, B.J.1
Gibbs, A.G.2
Roberts, S.P.3
-
72
-
-
27944506422
-
Acclimation, shock and hardening in the cold
-
DOI 10.1016/j.jtherbio.2005.07.002, PII S0306456505000707
-
Sinclair BJ, Roberts SP. 2005. Acclimation, shock and hardening in the cold. J Therm Biol. 30:557-562. (Pubitemid 41681986)
-
(2005)
Journal of Thermal Biology
, vol.30
, Issue.8
, pp. 557-562
-
-
Sinclair, B.J.1
Roberts, S.P.2
-
73
-
-
33750622610
-
Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences
-
Singh ND, Arndt PF, Petrov DA. 2006. Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences. BMC Biol. 4:37.
-
(2006)
BMC Biol.
, vol.4
, pp. 37
-
-
Singh, N.D.1
Arndt, P.F.2
Petrov, D.A.3
-
74
-
-
0242574386
-
The evolutionary and ecological role of heat shock proteins
-
DOI 10.1046/j.1461-0248.2003.00528.x
-
Sørensen JG, Kristensen TN, Loeschcke V. 2003. The evolutionary and ecological role of heat shock proteins. Ecol Lett. 6:1025-1037. (Pubitemid 37365491)
-
(2003)
Ecology Letters
, vol.6
, Issue.11
, pp. 1025-1037
-
-
Sorensen, J.G.1
Kristensen, T.N.2
Loeschcke, V.3
-
75
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Tajima F. 1993. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135:599-607. (Pubitemid 23307610)
-
(1993)
Genetics
, vol.135
, Issue.2
, pp. 599-607
-
-
Tajima, F.1
-
76
-
-
34247113780
-
Structural and mutational analyses of Drp35 from Staphylococcus aureus: A possible mechanism for its lactonase activity
-
DOI 10.1074/jbc.M607340200
-
Tanaka Y, Morikawa K, Ohki Y, Yao M, Tsumoto K, Watanabe N, Ohta T, Tanaka I. 2007. Structural and mutational analyses of Drp35 from staphylococcus aurus: a possible mechanism for its lactonase activity. J Biol Chem. 282:5770-5780. (Pubitemid 47093737)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.8
, pp. 5770-5780
-
-
Tanaka, Y.1
Morikawa, K.2
Ohki, Y.3
Yao, M.4
Tsumoto, K.5
Watanabe, N.6
Ohta, T.7
Tanaka, I.8
-
77
-
-
47549103727
-
Rapid cold-hardening in larvae of the Antarctic midge Belgica antarctica: Cellular cold-sensing and a role for calcium
-
Teets NM, Elnitsky MA, Benoit JB, Lopez-Martinez G, Denlinger DL, Lee RE Jr.. 2008. Rapid cold-hardening in larvae of the Antarctic midge Belgica antarctica: cellular cold-sensing and a role for calcium. Am J Physiol Regul Integr Comp Physiol. 294:1938-1946.
-
(2008)
Am J Physiol Regul Integr Comp Physiol.
, vol.294
, pp. 1938-1946
-
-
Teets, N.M.1
Elnitsky, M.A.2
Benoit, J.B.3
Lopez-Martinez, G.4
Denlinger, D.L.5
Lee Jr., R.E.6
-
78
-
-
66049085185
-
General gene movement off the X chromosome in the Drosophila genus
-
Vibranovski MD, Zhang Y, Long M. 2009. General gene movement off the X chromosome in the Drosophila genus. Genome Res. 19:897-903.
-
(2009)
Genome Res.
, vol.19
, pp. 897-903
-
-
Vibranovski, M.D.1
Zhang, Y.2
Long, M.3
-
80
-
-
0037449203
-
Proteomics in Drosophila melanogaster: First 2D database of larval hemolymph proteins
-
DOI 10.1016/S0006-291X(03)00683-1
-
Vierstraete E, Cerstiaens A, Baggerman G, Van den Bergh G, De Loof A, Schoofs L. 2003. Proteomics in Drosophila melanogaster: first 2D database of larval hemolymph proteins. Biochem Biophys Res Commun. 304:831-838. (Pubitemid 36513565)
-
(2003)
Biochemical and Biophysical Research Communications
, vol.304
, Issue.4
, pp. 831-838
-
-
Vierstraete, E.1
Cerstiaens, A.2
Baggerman, G.3
Van Den Bergh, G.4
De Loof, A.5
Schoofs, L.6
-
81
-
-
0003243515
-
Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives
-
Wang RL, Wakeley J, Hey J. 1997. Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147:1091-1106. (Pubitemid 27467453)
-
(1997)
Genetics
, vol.147
, Issue.3
, pp. 1091-1106
-
-
Wang, R.L.1
Wakeley, J.2
Hey, J.3
-
82
-
-
0029661702
-
Acclimation, cross-generation effects, and the response to selection for increased cold resistance in Drosophila
-
Watson MJO, Hoffmann AA. 1996. Acclimation, cross-generation effects, and the response to selection for increased cold resistance in Drosophila. Evolution 50:1182-1192.
-
(1996)
Evolution
, vol.50
, pp. 1182-1192
-
-
Watson, M.J.O.1
Hoffmann, A.A.2
-
83
-
-
0032843848
-
Distributions of statistics used for the comparison of models of sequence evolution in phylogenetics
-
Whelan S, Goldman N. 1999. Distribution of statistics used for the comparison of models of sequences evolution in phylogenetics. Mol Biol Evol. 16:1292-1299. (Pubitemid 29409873)
-
(1999)
Molecular Biology and Evolution
, vol.16
, Issue.9
, pp. 1292-1299
-
-
Whelan, S.1
Goldman, N.2
-
84
-
-
33645649132
-
Identification of physicochemical selective pressure on protein encoding nucleotide sequences
-
Wong WSW, Sainudiin R, Nielsen R. 2006. Identification of physicochemical selective pressure on protein encoding nucleotide sequences. BMC Bioinformatics. 7:148.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 148
-
-
Wong, W.S.W.1
Sainudiin, R.2
Nielsen, R.3
-
85
-
-
0025318864
-
The 'effective number of codons' used in a gene
-
DOI 10.1016/0378-1119(90)90491-9
-
Wright F. 1990. The effective number of codons used in a gene. Gene 87:23-29. (Pubitemid 20139850)
-
(1990)
Gene
, vol.87
, Issue.1
, pp. 23-29
-
-
Wright, F.1
-
86
-
-
19644384999
-
Role of regucalcin in maintaining cell homeostasis and function (review)
-
Yamaguchi M. 2005. Role of regucalcin in maintaining cell homeostasis and function (review). Int J Mol Med. 15:371-389.
-
(2005)
Int J Mol Med.
, vol.15
, pp. 371-389
-
-
Yamaguchi, M.1
-
87
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
DOI 10.1093/molbev/msm088
-
Yang Z. 2007. PAML 4: Phylogenetic Analysis by Maximum Likelihood. Mol Biol Evol. 24:1586-1591. (Pubitemid 47236688)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
88
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z, Nielsen R, Goldman N, Pedersen A-M K. 2000. Codonsubstitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449. (Pubitemid 30257141)
-
(2000)
Genetics
, vol.155
, Issue.1
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.-M.K.4
-
89
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
DOI 10.1093/molbev/msi237
-
Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branchsite likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479. (Pubitemid 41661383)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.12
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
90
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y. 2008. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics. 9:40.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
|