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Volumn 144, Issue 2, 2011, Pages 405-428

Modeling Translation in Protein Synthesis with TASEP: A Tutorial and Recent Developments

Author keywords

Nonequilibrium statistical physics; Protein synthesis; TASEP

Indexed keywords


EID: 79960980919     PISSN: 00224715     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10955-011-0183-1     Document Type: Article
Times cited : (196)

References (101)
  • 2
    • 34547256160 scopus 로고    scopus 로고
    • Power spectra of the total occupancy in the totally asymmetric simple exclusion process
    • Adams, D. A., Zia, R. K. P., Schmittmann, B.: Power spectra of the total occupancy in the totally asymmetric simple exclusion process. Phys. Rev. Lett. 99, 020601 (2007).
    • (2007) Phys. Rev. Lett. , vol.99 , pp. 020601
    • Adams, D.A.1    Zia, R.K.P.2    Schmittmann, B.3
  • 4
    • 0345491998 scopus 로고    scopus 로고
    • The exact solution of the asymmetric exclusion problem with particles of arbitrary size: Matrix product ansatz
    • Alcaraz, F. C., Lazo, M. J.: The exact solution of the asymmetric exclusion problem with particles of arbitrary size: Matrix product ansatz. Braz. J. Phys. 33, 533 (2003).
    • (2003) Braz. J. Phys. , vol.33 , pp. 533
    • Alcaraz, F.C.1    Lazo, M.J.2
  • 5
    • 33745763700 scopus 로고    scopus 로고
    • How initiation factors tune the rate of initiation of protein synthesis in bacteria
    • Antoun, A., Pavlov, M. Y., Lovmar, M., Ehrenberg, M.: How initiation factors tune the rate of initiation of protein synthesis in bacteria. EMBO J. 25(11), 2539-2550 (2006).
    • (2006) EMBO J. , vol.25 , Issue.11 , pp. 2539-2550
    • Antoun, A.1    Pavlov, M.Y.2    Lovmar, M.3    Ehrenberg, M.4
  • 7
    • 0041816171 scopus 로고    scopus 로고
    • Diffusion and scattering of shocks in the partially asymmetric exclusion process
    • Belitzky, V., Schütz, G. M.: Diffusion and scattering of shocks in the partially asymmetric exclusion process. Electron. J. Probab. 7(11), 1 (2002).
    • (2002) Electron. J. Probab. , vol.7 , Issue.11 , pp. 1
    • Belitzky, V.1    Schütz, G.M.2
  • 9
    • 0028052055 scopus 로고
    • How the ribosome moves along the mrna during protein synthesis
    • Beyer, D., Skripkin, E., Wadzack, J., Nierhaus, K. H.: How the ribosome moves along the mrna during protein synthesis. J. Biol. Chem. 269(48), 30713-30717 (1994).
    • (1994) J. Biol. Chem. , vol.269 , Issue.48 , pp. 30713-30717
    • Beyer, D.1    Skripkin, E.2    Wadzack, J.3    Nierhaus, K.H.4
  • 10
    • 85204098531 scopus 로고    scopus 로고
    • BioStudio. www. biostudio. com/demo_freeman_protein_synthesis. htm.
    • BioStudio
  • 11
    • 35648990568 scopus 로고    scopus 로고
    • Nonequilibrium steady states of matrix-product form: a solver's guide
    • Blythe, R. A., Evans, M. R.: Nonequilibrium steady states of matrix-product form: a solver's guide. J. Phys. A, Math. Gen. 40(46), R333 (2007).
    • (2007) J. Phys. A, Math. Gen. , vol.40 , Issue.46
    • Blythe, R.A.1    Evans, M.R.2
  • 12
    • 0042845842 scopus 로고    scopus 로고
    • Ribosome recycling, diffusion, and mrna loop formation in translational regulation
    • Chou, T.: Ribosome recycling, diffusion, and mrna loop formation in translational regulation. Biophys. J. 85, 755 (2010).
    • (2010) Biophys. J. , vol.85 , pp. 755
    • Chou, T.1
  • 13
    • 0037470280 scopus 로고    scopus 로고
    • Totally asymmetric exclusion processes with particles of arbitrary size
    • Chou, T., Lakatos, G.: Totally asymmetric exclusion processes with particles of arbitrary size. J. Phys. A, Math. Gen. 36, 2027 (2003).
    • (2003) J. Phys. A, Math. Gen. , vol.36 , pp. 2027
    • Chou, T.1    Lakatos, G.2
  • 14
    • 18144385852 scopus 로고    scopus 로고
    • Clustered bottlenecks in mrna translation and protein synthesis
    • Chou, T., Lakatos, G.: Clustered bottlenecks in mrna translation and protein synthesis. Phys. Rev. Lett. 93, 198101 (2004).
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 198101
    • Chou, T.1    Lakatos, G.2
  • 15
    • 0001405969 scopus 로고    scopus 로고
    • Statistical physics of vehicular traffic and some related systems
    • Chowdhury, D., Santen, L., Schadschneider, A.: Statistical physics of vehicular traffic and some related systems. Phys. Rep. 329, 199 (2000).
    • (2000) Phys. Rep. , vol.329 , pp. 199
    • Chowdhury, D.1    Santen, L.2    Schadschneider, A.3
  • 16
    • 0001292095 scopus 로고    scopus 로고
    • Vehicular traffic: A system of interacting particles driven far from equilibrium
    • Chowdhury, D., Santen, L., Schadschneider, A.: Vehicular traffic: A system of interacting particles driven far from equilibrium. Curr. Sci. 77, 411 (2000).
    • (2000) Curr. Sci. , vol.77 , pp. 411
    • Chowdhury, D.1    Santen, L.2    Schadschneider, A.3
  • 19
    • 65449182024 scopus 로고    scopus 로고
    • Feedback and fluctuations in a totally asymmetric simple exclusion process with finite resources
    • Cook, L. J., Zia, R. K. P.: Feedback and fluctuations in a totally asymmetric simple exclusion process with finite resources. J. Stat. Mech. Theory Exp. 2009, P02012 (2009).
    • (2009) J. Stat. Mech. Theory Exp. , vol.2009
    • Cook, L.J.1    Zia, R.K.P.2
  • 20
    • 77957047133 scopus 로고    scopus 로고
    • Power spectra of a constrained totally asymmetric simple exclusion process
    • Cook, L. J., Zia, R. K. P.: Power spectra of a constrained totally asymmetric simple exclusion process. J. Stat. Mech. Theory Exp. 2010, P07014 (2010).
    • (2010) J. Stat. Mech. Theory Exp. , vol.2010
    • Cook, L.J.1    Zia, R.K.P.2
  • 21
    • 70349913474 scopus 로고    scopus 로고
    • Competition between many totally asymmetric simple exclusion processes for a finite pool of resources
    • Cook, L. J., Zia, R. K. P., Schmittmann, B.: Competition between many totally asymmetric simple exclusion processes for a finite pool of resources. Phys. Rev. E 80(3), 031142 (2009).
    • (2009) Phys. Rev. E , vol.80 , Issue.3 , pp. 031142
    • Cook, L.J.1    Zia, R.K.P.2    Schmittmann, B.3
  • 22
    • 70449209123 scopus 로고
    • On protein synthesis
    • Crick, F. H. C.: On protein synthesis. Symp. Soc. Exp. Biol. XII, 139-163 (1958).
    • (1958) Symp. Soc. Exp. Biol. , vol.XII , pp. 139-163
    • Crick, F.H.C.1
  • 23
    • 0013936167 scopus 로고
    • Codon-anticodon pairing: the wobble hypothesis
    • Crick, F. H. C.: Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol. 19(2), 548-555 (1966).
    • (1966) J. Mol. Biol. , vol.19 , Issue.2 , pp. 548-555
    • Crick, F.H.C.1
  • 24
    • 0014937223 scopus 로고
    • Central dogma of molecular biology
    • Crick, F. H. C.: Central dogma of molecular biology. Nature 227, 561-563 (1970).
    • (1970) Nature , vol.227 , pp. 561-563
    • Crick, F.H.C.1
  • 26
    • 37649026711 scopus 로고    scopus 로고
    • Exact spectral gaps of the asymmetric exclusion process with open boundaries
    • de Gier, J., Essler, F. H. L.: Exact spectral gaps of the asymmetric exclusion process with open boundaries. J. Stat. Mech. Theory Exp. 2006, P12011 (2006).
    • (2006) J. Stat. Mech. Theory Exp. , vol.2006
    • de Gier, J.1    Essler, F.H.L.2
  • 27
    • 0012893235 scopus 로고
    • Self diffusion in one dimensional lattice gases in the presence of an external field
    • De Masi, A., Ferrari, P. A.: Self diffusion in one dimensional lattice gases in the presence of an external field. J. Stat. Phys. 38, 603 (1985).
    • (1985) J. Stat. Phys. , vol.38 , pp. 603
    • de Masi, A.1    Ferrari, P.A.2
  • 28
    • 34547667146 scopus 로고    scopus 로고
    • Non-equilibrium steady states: fluctuations and large deviations of the density and of the current
    • Derrida, B.: Non-equilibrium steady states: fluctuations and large deviations of the density and of the current. J. Stat. Mech. 2007, P07023 (2007).
    • (2007) J. Stat. Mech. , vol.2007
    • Derrida, B.1
  • 29
    • 0001366373 scopus 로고
    • An exact solution of a one-dimensional asymmetric exclusion model with open boundaries
    • Derrida, B., Domany, E., Mukamel, D.: An exact solution of a one-dimensional asymmetric exclusion model with open boundaries,. J. Stat. Phys. 69, 667 (1992).
    • (1992) J. Stat. Phys. , vol.69 , pp. 667
    • Derrida, B.1    Domany, E.2    Mukamel, D.3
  • 30
    • 36149030302 scopus 로고
    • Exact solution of a 1d asymmetric exclusion model using a matrix formulation
    • Derrida, B., Evans, M. R., Pasquier, V.: Exact solution of a 1d asymmetric exclusion model using a matrix formulation. J. Phys. A, Math. Gen. 26, 1493 (1993).
    • (1993) J. Phys. A, Math. Gen. , vol.26 , pp. 1493
    • Derrida, B.1    Evans, M.R.2    Pasquier, V.3
  • 31
    • 36149030302 scopus 로고
    • Exact solution of a 1d asymmetric exclusion model using a matrix formulation
    • Derrida, B., Evans, M. R., Hakim, V., Pasquier, V.: Exact solution of a 1d asymmetric exclusion model using a matrix formulation. J. Phys. A, Math. Gen. 26, 1493 (1993).
    • (1993) J. Phys. A, Math. Gen. , vol.26 , pp. 1493
    • Derrida, B.1    Evans, M.R.2    Hakim, V.3    Pasquier, V.4
  • 32
    • 67049098976 scopus 로고    scopus 로고
    • Current fluctuations of the one dimensional symmetric simple exclusion process with step initial condition
    • Derrida, B., Gerschenfeld, A.: Current fluctuations of the one dimensional symmetric simple exclusion process with step initial condition. J. Stat. Phys. 136(1), 1 (2009).
    • (2009) J. Stat. Phys. , vol.136 , Issue.1 , pp. 1
    • Derrida, B.1    Gerschenfeld, A.2
  • 33
    • 0642277133 scopus 로고
    • Exact solution of the totally asymmetric simple exclusion process: shock profiles
    • Derrida, B., Janowsky, S. A., Lebowitz, J. L., Speer, E. R.: Exact solution of the totally asymmetric simple exclusion process: shock profiles. J. Stat. Phys. 73, 813 (1993).
    • (1993) J. Stat. Phys. , vol.73 , pp. 813
    • Derrida, B.1    Janowsky, S.A.2    Lebowitz, J.L.3    Speer, E.R.4
  • 34
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of trna abundance and codon usage in Escherichia coli at different growth rates
    • Dong, H., Nilsson, L., Kurland, C. G.: Co-variation of trna abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260(5), 649-63 (1996).
    • (1996) J. Mol. Biol. , vol.260 , Issue.5 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 35
    • 36148962461 scopus 로고    scopus 로고
    • Inhomogeneous exclusion processes and protein synthesis
    • Dong, J. J., Schmittmann, B., Zia, R. K. P.: Inhomogeneous exclusion processes and protein synthesis. Phys. Rev. E 76, 051113 (2007).
    • (2007) Phys. Rev. E , vol.76 , pp. 051113
    • Dong, J.J.1    Schmittmann, B.2    Zia, R.K.P.3
  • 36
    • 34249900723 scopus 로고    scopus 로고
    • Towards a model for protein production rates
    • Dong, J. J., Schmittmann, B., Zia, R. K. P.: Towards a model for protein production rates. J. Stat. Phys. 128(1), 21 (2007).
    • (2007) J. Stat. Phys. , vol.128 , Issue.1 , pp. 21
    • Dong, J.J.1    Schmittmann, B.2    Zia, R.K.P.3
  • 37
    • 64549125514 scopus 로고    scopus 로고
    • Understanding the edge effect in tasep with mean-field theoretic approaches
    • Dong, J. J., Zia, R. K. P., Schmittmann, B.: Understanding the edge effect in tasep with mean-field theoretic approaches. J. Phys. A, Math. Theor. 42(1), 015002 (2009).
    • (2009) J. Phys. A, Math. Theor. , vol.42 , Issue.1 , pp. 015002
    • Dong, J.J.1    Zia, R.K.P.2    Schmittmann, B.3
  • 39
    • 0034360327 scopus 로고    scopus 로고
    • Relaxation spectrum of the asymmetric exclusion process with open boundaries
    • Dudzinski, M., Schütz, G. M.: Relaxation spectrum of the asymmetric exclusion process with open boundaries. J. Phys. A, Math. Gen. 33(47), 8351 (2000).
    • (2000) J. Phys. A, Math. Gen. , vol.33 , Issue.47 , pp. 8351
    • Dudzinski, M.1    Schütz, G.M.2
  • 41
    • 35148841937 scopus 로고    scopus 로고
    • Statistical physics is for the birds
    • Feder, T.: Statistical physics is for the birds. Phys. Today 60(10), 28 (2007).
    • (2007) Phys. Today , vol.60 , Issue.10 , pp. 28
    • Feder, T.1
  • 42
    • 58149218200 scopus 로고    scopus 로고
    • Asymmetric exclusion processes with disorder: Effect of correlations
    • Ebrahim Foulaadvand, M., Kolomeisky, A. B., Teymouri, H.: Asymmetric exclusion processes with disorder: Effect of correlations. Phys. Rev. E 78(6), 061116 (2008).
    • (2008) Phys. Rev. E , vol.78 , Issue.6 , pp. 061116
    • Ebrahim Foulaadvand, M.1    Kolomeisky, A.B.2    Teymouri, H.3
  • 43
    • 34347396666 scopus 로고    scopus 로고
    • Movement in ribosome translocation
    • Fraser, C. S., Hershey, J. W. B.: Movement in ribosome translocation. J. Biol. 4(2), 8 (2005).
    • (2005) J. Biol. , vol.4 , Issue.2 , pp. 8
    • Fraser, C.S.1    Hershey, J.W.B.2
  • 45
    • 1642603385 scopus 로고    scopus 로고
    • Bethe ansatz calculation of the spectral gap of the asymmetric exclusion process
    • Golinelli, O., Mallick, K.: Bethe ansatz calculation of the spectral gap of the asymmetric exclusion process. J. Phys. A, Math. Gen. 37(10), 3321 (2004).
    • (2004) J. Phys. A, Math. Gen. , vol.37 , Issue.10 , pp. 3321
    • Golinelli, O.1    Mallick, K.2
  • 46
    • 14544271850 scopus 로고    scopus 로고
    • Spectral gap of the totally asymmetric exclusion process at arbitrary filling
    • Golinelli, O., Mallick, K.: Spectral gap of the totally asymmetric exclusion process at arbitrary filling. J. Phys. A, Math. Gen. 38(7), 1419 (2005).
    • (2005) J. Phys. A, Math. Gen. , vol.38 , Issue.7 , pp. 1419
    • Golinelli, O.1    Mallick, K.2
  • 47
    • 33749384427 scopus 로고    scopus 로고
    • The asymmetric simple exclusion process: an integrable model for non-equilibrium statistical mechanics
    • Golinelli, O., Mallick, K.: The asymmetric simple exclusion process: an integrable model for non-equilibrium statistical mechanics. J. Phys. A, Math. Gen. 39(41), 12679 (2006).
    • (2006) J. Phys. A, Math. Gen. , vol.39 , Issue.41 , pp. 12679
    • Golinelli, O.1    Mallick, K.2
  • 48
    • 43049127190 scopus 로고    scopus 로고
    • Single-bottleneck approximation for driven lattice gases with disorder and open boundary conditions
    • Greulich, P., Schadschneider, A.: Single-bottleneck approximation for driven lattice gases with disorder and open boundary conditions. J. Stat. Mech. Theory Exp. 2008, P04009 (2008).
    • (2008) J. Stat. Mech. Theory Exp. , vol.2008
    • Greulich, P.1    Schadschneider, A.2
  • 49
    • 34548076051 scopus 로고    scopus 로고
    • Tagged particle correlations in the asymmetric simple exclusion process: Finite-size effects
    • Gupta, S., Majumdar, S. N., Godrèche, C., Barma, M.: Tagged particle correlations in the asymmetric simple exclusion process: Finite-size effects. Phys. Rev. E 76, 021112 (2007).
    • (2007) Phys. Rev. E , vol.76 , pp. 021112
    • Gupta, S.1    Majumdar, S.N.2    Godrèche, C.3    Barma, M.4
  • 50
    • 4243450938 scopus 로고
    • Bethe solution for the dynamical scaling exponent of the noisy burgers equation
    • Gwa, L.-H., Spohn, H.: Bethe solution for the dynamical scaling exponent of the noisy burgers equation. Phys. Rev. A 46, 844 (1992).
    • (1992) Phys. Rev. A , vol.46 , pp. 844
    • Gwa, L.-H.1    Spohn, H.2
  • 51
    • 37649027586 scopus 로고    scopus 로고
    • Macroscopic car condensation in a parking garage
    • Ha, M., den Nijs, M.: Macroscopic car condensation in a parking garage. Phys. Rev. E 66, 036118 (2002).
    • (2002) Phys. Rev. E , vol.66 , pp. 036118
    • Ha, M.1    den Nijs, M.2
  • 52
    • 42749104044 scopus 로고    scopus 로고
    • Disordered asymmetric simple exclusion process: Mean-field treatment
    • Harris, R. J., Stinchcombe, R. B.: Disordered asymmetric simple exclusion process: Mean-field treatment. Phys. Rev. E 70, 016108 (2004).
    • (2004) Phys. Rev. E , vol.70 , pp. 016108
    • Harris, R.J.1    Stinchcombe, R.B.2
  • 53
    • 0019178883 scopus 로고
    • Mathematical modelling of translation of mrna in eucaryotes; steady states, time-dependent processes and application to reticulocytes
    • Heinrich, R., Rapoport, T. A.: Mathematical modelling of translation of mrna in eucaryotes; steady states, time-dependent processes and application to reticulocytes. J. Theor. Biol. 86(2), 279-313 (1980).
    • (1980) J. Theor. Biol. , vol.86 , Issue.2 , pp. 279-313
    • Heinrich, R.1    Rapoport, T.A.2
  • 55
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer rnas and the occurrence of the respective codons in its protein genes
    • Ikemura, T.: Correlation between the abundance of Escherichia coli transfer rnas and the occurrence of the respective codons in its protein genes. J. Mol. Biol. 146(1), 1-21 (1981).
    • (1981) J. Mol. Biol. , vol.146 , Issue.1 , pp. 1-21
    • Ikemura, T.1
  • 56
    • 18844386816 scopus 로고
    • Finite-size effects and shock fluctuations in the asymmetric simple-exclusion process
    • Janowsky, S. A., Lebowitz, J. L.: Finite-size effects and shock fluctuations in the asymmetric simple-exclusion process. Phys. Rev. A 45, 618 (1992).
    • (1992) Phys. Rev. A , vol.45 , pp. 618
    • Janowsky, S.A.1    Lebowitz, J.L.2
  • 57
    • 0001288820 scopus 로고
    • Bethe ansatz solution for crossover scaling functions of the asymmetric xxz chain and the Kardar-Parisi-Zhang-type growth model
    • Kim, D.: Bethe ansatz solution for crossover scaling functions of the asymmetric xxz chain and the Kardar-Parisi-Zhang-type growth model. Phys. Rev. E 52, 3512 (1995).
    • (1995) Phys. Rev. E , vol.52 , pp. 3512
    • Kim, D.1
  • 58
    • 0032603202 scopus 로고    scopus 로고
    • Termination of translation in eukaryotes: new results and new hypotheses
    • Kisselev, L. L., Frolova, L. Y.: Termination of translation in eukaryotes: new results and new hypotheses. Biochemistry (Moscow) 64, 8-16 (1999).
    • (1999) Biochemistry (Moscow) , vol.64 , pp. 8-16
    • Kisselev, L.L.1    Frolova, L.Y.2
  • 61
    • 0032579110 scopus 로고    scopus 로고
    • Asymmetric simple exclusion model with local inhomogeneity
    • Kolomeisky, A. B.: Asymmetric simple exclusion model with local inhomogeneity. J. Phys. A, Math. Gen. 31(4), 1153 (1998).
    • (1998) J. Phys. A, Math. Gen. , vol.31 , Issue.4 , pp. 1153
    • Kolomeisky, A.B.1
  • 62
    • 0020570527 scopus 로고
    • Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles
    • Kozak, M.: Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles. Microbiol. Rev. 47(1), 1-45 (1983).
    • (1983) Microbiol. Rev. , vol.47 , Issue.1 , pp. 1-45
    • Kozak, M.1
  • 63
    • 12044250009 scopus 로고
    • Boundary-induced phase transitions in driven diffusive systems
    • Krug, J.: Boundary-induced phase transitions in driven diffusive systems. Phys. Rev. Lett. 67, 1882 (1991).
    • (1991) Phys. Rev. Lett. , vol.67 , pp. 1882
    • Krug, J.1
  • 64
    • 0034349243 scopus 로고    scopus 로고
    • Phase separation in disordered exclusion models
    • Krug, J.: Phase separation in disordered exclusion models. Braz. J. Phys. 30, 97-104 (2000).
    • (2000) Braz. J. Phys. , vol.30 , pp. 97-104
    • Krug, J.1
  • 65
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla, G., Murray, A. W., Tollervey, D., Plotkin, J. B.: Coding-sequence determinants of gene expression in Escherichia coli. Science 324(5924), 255-258 (2009).
    • (2009) Science , vol.324 , Issue.5924 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 66
    • 0003226953 scopus 로고
    • Influence of an external force on tracer diffusion in a one-dimensional lattice gas
    • Kutner, R., van Beijeren, H.: Influence of an external force on tracer diffusion in a one-dimensional lattice gas. J. Stat. Phys. 39, 317 (1985).
    • (1985) J. Stat. Phys. , vol.39 , pp. 317
    • Kutner, R.1    van Beijeren, H.2
  • 68
    • 0000892375 scopus 로고
    • Regulation of the protein-synthesizing machinery-ribosomes, trna, factors and so on
    • R. F. Goldberger (Ed.), New York: Plenum
    • Maaloe, O.: Regulation of the protein-synthesizing machinery-ribosomes, trna, factors and so on. In: Goldberger, R. F. (ed.) Biological Regulation and Development. Plenum, New York (1979).
    • (1979) Biological Regulation and Development
    • Maaloe, O.1
  • 69
    • 84984085494 scopus 로고
    • Concerning the kinetics of polypeptide synthesis on polyribosomes
    • MacDonald, C. T., Gibbs, J. H.: Concerning the kinetics of polypeptide synthesis on polyribosomes. Biopolymers 7, 707 (1969).
    • (1969) Biopolymers , vol.7 , pp. 707
    • Macdonald, C.T.1    Gibbs, J.H.2
  • 70
    • 0014245158 scopus 로고
    • Kinetics of biopolymerization on nucleic acid templates
    • MacDonald, C. T., Gibbs, J. H., Pipkin, A. C.: Kinetics of biopolymerization on nucleic acid templates. Biopolymers 6(1) (1968).
    • (1968) Biopolymers , vol.6 , Issue.1
    • MacDonald, C.T.1    Gibbs, J.H.2    Pipkin, A.C.3
  • 71
    • 0000312399 scopus 로고
    • Tag diffusion in driven systems, growing interfaces, and anomalous fluctuations
    • Majumdar, S. N., Barma, M.: Tag diffusion in driven systems, growing interfaces, and anomalous fluctuations. Phys. Rev. B 44, 5306 (1991).
    • (1991) Phys. Rev. B , vol.44 , pp. 5306
    • Majumdar, S.N.1    Barma, M.2
  • 72
    • 0001590879 scopus 로고    scopus 로고
    • Shocks in the asymmetry exclusion model with an impurity
    • Mallick, K.: Shocks in the asymmetry exclusion model with an impurity. J. Phys. A, Math. Gen. 29, 5375 (1996).
    • (1996) J. Phys. A, Math. Gen. , vol.29 , pp. 5375
    • Mallick, K.1
  • 73
    • 0026718508 scopus 로고
    • Mechanism and regulation of eukaryotic protein synthesis
    • Merrick, W.: Mechanism and regulation of eukaryotic protein synthesis. Microbiol. Mol. Biol. Rev. 56(2), 291 (1992).
    • (1992) Microbiol. Mol. Biol. Rev. , vol.56 , Issue.2 , pp. 291
    • Merrick, W.1
  • 74
    • 0021891865 scopus 로고
    • Eukaryotic protein synthesis
    • Moldave, K.: Eukaryotic protein synthesis. Annu. Rev. Biochem. 54(1), 1109-1149 (1985).
    • (1985) Annu. Rev. Biochem. , vol.54 , Issue.1 , pp. 1109-1149
    • Moldave, K.1
  • 75
    • 0036388311 scopus 로고    scopus 로고
    • Relaxation times in the asep model using a dmrg method
    • Nagy, Z., Appert, C., Santen, L.: Relaxation times in the asep model using a dmrg method. J. Stat. Phys. 109, 623 (2002).
    • (2002) J. Stat. Phys. , vol.109 , pp. 623
    • Nagy, Z.1    Appert, C.2    Santen, L.3
  • 76
    • 0031901175 scopus 로고    scopus 로고
    • How protein reads the stop codon and terminates translation
    • Nakamura, Y., Ito, K.: How protein reads the stop codon and terminates translation. Genes Cells 3, 265-278 (1998).
    • (1998) Genes Cells , vol.3 , pp. 265-278
    • Nakamura, Y.1    Ito, K.2
  • 77
    • 0031617024 scopus 로고    scopus 로고
    • Eukaryotic translation elongation factor 1 [alpha]: Structure, expression, functions, and possible role in aminoacyl-trna channeling
    • Negrutskii, B., El'Skaya, A.: Eukaryotic translation elongation factor 1 [alpha]: Structure, expression, functions, and possible role in aminoacyl-trna channeling. Prog. Nucleic Acid Res. 60, 47-78 (1998).
    • (1998) Prog. Nucleic Acid Res. , vol.60 , pp. 47-78
    • Negrutskii, B.1    El'Skaya, A.2
  • 78
    • 0025291205 scopus 로고
    • Translational dynamics: Interactions between the translational factors, trna and ribosomes during eukaryotic protein synthesis
    • Nygård, O., Nilsson, L.: Translational dynamics: Interactions between the translational factors, trna and ribosomes during eukaryotic protein synthesis. Eur. J. Biochem. 191(1), 1-17 (1990).
    • (1990) Eur. J. Biochem. , vol.191 , Issue.1 , pp. 1-17
    • Nygård, O.1    Nilsson, L.2
  • 80
    • 0034065158 scopus 로고    scopus 로고
    • The structure and function of initiation factors in eukaryotic protein synthesis
    • Pestova, T., Hellen, C.: The structure and function of initiation factors in eukaryotic protein synthesis. Cell. Mol. Life Sci. 57(4), 651 (2000).
    • (2000) Cell. Mol. Life Sci. , vol.57 , Issue.4 , pp. 651
    • Pestova, T.1    Hellen, C.2
  • 81
    • 28844468949 scopus 로고    scopus 로고
    • Dynamic correlation functions and Boltzmann Langevin approach for driven one dimensional lattice gas
    • Pierobon, P., Parmeggiani, A., von Oppen, F., Frey, E.: Dynamic correlation functions and Boltzmann Langevin approach for driven one dimensional lattice gas. Phys. Rev. E 72, 036123 (2005).
    • (2005) Phys. Rev. E , vol.72 , pp. 036123
    • Pierobon, P.1    Parmeggiani, A.2    von Oppen, F.3    Frey, E.4
  • 84
    • 0141857676 scopus 로고    scopus 로고
    • The asymmetric exclusion process revisited: Fluctuations and dynamics in the domain wall picture
    • Santen, L., Appert, C.: The asymmetric exclusion process revisited: Fluctuations and dynamics in the domain wall picture. J. Stat. Phys. 106, 187 (2002).
    • (2002) J. Stat. Phys. , vol.106 , pp. 187
    • Santen, L.1    Appert, C.2
  • 85
    • 0037452091 scopus 로고    scopus 로고
    • Molecular motors
    • Schliwa, M., Woehlke, G.: Molecular motors. Nature 422, 759 (2003).
    • (2003) Nature , vol.422 , pp. 759
    • Schliwa, M.1    Woehlke, G.2
  • 86
    • 0000000808 scopus 로고
    • Time-dependent correlation functions in a one-dimensional asymmetric exclusion process
    • Schütz, G. M.: Time-dependent correlation functions in a one-dimensional asymmetric exclusion process. Phys. Rev. E 47, 4265 (1993).
    • (1993) Phys. Rev. E , vol.47 , pp. 4265
    • Schütz, G.M.1
  • 87
    • 0040629192 scopus 로고
    • Phase transitions in an exactly solvable one-dimensional exclusion process
    • Schütz, G. M., Domany, E.: Phase transitions in an exactly solvable one-dimensional exclusion process. J. Stat. Phys. 72, 277 (1993).
    • (1993) J. Stat. Phys. , vol.72 , pp. 277
    • Schütz, G.M.1    Domany, E.2
  • 88
    • 1342347334 scopus 로고    scopus 로고
    • Local inhomogeneity in asymmetric simple exclusion processes with extended objects
    • Shaw, L. B., Kolomeisky, A. B., Lee, K. H.: Local inhomogeneity in asymmetric simple exclusion processes with extended objects. J. Phys. A, Math. Gen. 37, 2105 (2004).
    • (2004) J. Phys. A, Math. Gen. , vol.37 , pp. 2105
    • Shaw, L.B.1    Kolomeisky, A.B.2    Lee, K.H.3
  • 89
    • 42749107428 scopus 로고    scopus 로고
    • Modeling, simulations, and analyses of protein synthesis: Driven lattice gas with extended objects
    • Shaw, L. B., Zia, R. K. P., Lee, K. H.: Modeling, simulations, and analyses of protein synthesis: Driven lattice gas with extended objects. Phys. Rev. E 68, 021910 (2003).
    • (2003) Phys. Rev. E , vol.68 , pp. 021910
    • Shaw, L.B.1    Zia, R.K.P.2    Lee, K.H.3
  • 90
    • 0016610995 scopus 로고
    • Determinant of cistron specificity in bacterial ribosomes
    • Shine, J., Dalgarno, L.: Determinant of cistron specificity in bacterial ribosomes. Nature 254(5495), 34 (1975).
    • (1975) Nature , vol.254 , Issue.5495 , pp. 34
    • Shine, J.1    Dalgarno, L.2
  • 91
    • 0026409389 scopus 로고
    • Absolute in vivo translation rates of individual codons in Escherichia coli: The two glutamic acid codons gaa and gag are translated with a threefold difference in rate
    • Sørensen, M. A., Pedersen, S.: Absolute in vivo translation rates of individual codons in Escherichia coli: The two glutamic acid codons gaa and gag are translated with a threefold difference in rate. J. Mol. Biol. 222(2), 265-280 (1991).
    • (1991) J. Mol. Biol. , vol.222 , Issue.2 , pp. 265-280
    • Sørensen, M.A.1    Pedersen, S.2
  • 92
    • 3142745095 scopus 로고    scopus 로고
    • Emergence of collective behavior in evolving populations of flying agents
    • E. Cantu-Paz, J. A. Foster, K. Deb, L. D. Davis, R. Roy, U.-M. O'Reilly, H.-G. Beyer, R. Standish, G. Kendall, S. Wilson, M. Harman, J. Wegener, D. Dasgupta, M. A. Potter, A. C. Schultz, K. A. Dowsland, N. Jonoska, and J. Miller (Eds.), Berlin: Springer
    • Spector, L., Klein, J., Perry, C., Feinstein, M.: Emergence of collective behavior in evolving populations of flying agents. In: Cantu-Paz, E., Foster, J. A., Deb, K., Davis, L. D., Roy, R., O'Reilly, U.-M., Beyer, H.-G., Standish, R., Kendall, G., Wilson, S., Harman, M., Wegener, J., Dasgupta, D., Potter, M. A., Schultz, A. C., Dowsland, K. A., Jonoska, N., Miller, J. (eds.) Proceedings of the Genetic and Evolutionary Computation Conference. Springer, Berlin (2003).
    • (2003) Proceedings of the Genetic and Evolutionary Computation Conference
    • Spector, L.1    Klein, J.2    Perry, C.3    Feinstein, M.4
  • 93
    • 0040261379 scopus 로고
    • Interaction of Markov processes
    • Spitzer, F.: Interaction of Markov processes. Adv. Math. 5, 246 (1970).
    • (1970) Adv. Math. , vol.5 , pp. 246
    • Spitzer, F.1
  • 94
    • 17144405126 scopus 로고    scopus 로고
    • Power-law behavior in the power spectrum induced by Brownian motion of a domain wall
    • Takesue, S., Mitsudo, T., Hayakawa, H.: Power-law behavior in the power spectrum induced by Brownian motion of a domain wall. Phys. Rev. E 68, 015103(R) (2003).
    • (2003) Phys. Rev. E , vol.68 , pp. 015103
    • Takesue, S.1    Mitsudo, T.2    Hayakawa, H.3
  • 95
    • 4243740606 scopus 로고
    • Driven lattice gases with quenched disorder: Exact results and different macroscopic regimes
    • Tripathy, G., Barma, M.: Driven lattice gases with quenched disorder: Exact results and different macroscopic regimes. Phys. Rev. E 58, 1998 (1911).
    • (1911) Phys. Rev. E , vol.58 , pp. 1998
    • Tripathy, G.1    Barma, M.2
  • 96
    • 0021764898 scopus 로고
    • Translation is a non-uniform process: Effect of trna availability on the rate of elongation of nascent polypeptide chains
    • Varenne, S., Buc, J., Lloubes, R., Lazdunski, C.: Translation is a non-uniform process: Effect of trna availability on the rate of elongation of nascent polypeptide chains. J. Mol. Biol. 180(3), 549-576 (1984).
    • (1984) J. Mol. Biol. , vol.180 , Issue.3 , pp. 549-576
    • Varenne, S.1    Buc, J.2    Lloubes, R.3    Lazdunski, C.4
  • 97
    • 84893711784 scopus 로고    scopus 로고
    • Wikipedia, en.wikipedia.org/wiki/Genetic_code
    • Wikipedia. Genetic code. en. wikipedia. org/wiki/Genetic_code.
    • Genetic code
  • 100
    • 33745867615 scopus 로고    scopus 로고
    • A possible classification of nonequilibrium steady states
    • Zia, R. K. P., Schmittmann, B.: A possible classification of nonequilibrium steady states. J. Phys. A, Math. Gen. 39(41), L407-L413 (2006).
    • (2006) J. Phys. A, Math. Gen. , vol.39 , Issue.41 , pp. 407-413
    • Zia, R.K.P.1    Schmittmann, B.2
  • 101
    • 34547691286 scopus 로고    scopus 로고
    • Probability currents as principal characteristics in the statistical mechanics of nonequilibrium steady states
    • Zia, R. K. P., Schmittmann, B.: Probability currents as principal characteristics in the statistical mechanics of nonequilibrium steady states. J. Stat. Mech. Theory Exp. 2007, P07012 (2007).
    • (2007) J. Stat. Mech. Theory Exp. , vol.2007
    • Zia, R.K.P.1    Schmittmann, B.2


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