Molecular cloning and expression analysis of a novel SANT/MYB gene from Gossypium barbadense

Molecular Biology Reports

Volumn 38, Issue 4, 2011, Pages 2329-2336

  Zhang, Fei ^a   Liu, Xiang ^a   Zuo, Kaijing ^a   Sun, Xiaofen ^b   Tang, Kexuan ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b FUDAN UNIVERSITY   (China)

Author keywords

Cotton; Gossypium barbadense; MYB; Ovule; Transcription factor

Indexed keywords

COMPLEMENTARY DNA; GBRL 2 PROTEIN; PROTEIN MYB; UNCLASSIFIED DRUG; PRIMER DNA; TRANSCRIPTION FACTOR;

3' UNTRANSLATED REGION; ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; COTTON; DNA BINDING; FLOWER; FLOWERING; GENE AMPLIFICATION; GOSSYPIUM BARBADENSE; INTRON; ISOELECTRIC POINT; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OVULE; PETAL; PLANT LEAF; PLANT STEM; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEEDLING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STAMEN; STOP CODON; AGE; BIOLOGY; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENETICS; MOLECULAR GENETICS;

ANTIRRHINUM MAJUS; GOSSYPIUM; GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM;

AGE FACTORS; AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DNA PRIMERS; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; GOSSYPIUM; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 79960933934     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0366-x     Document Type: Article

References (30)

1. Basra A, Malik CP (1984) Development of the cotton fiber. Int Rev Cytol 89:65-113
2. Tiwari SC, Wilkins TA (1995) Cotton (Gossypium hirsutum) seed trichomes expand via diffuse growing mechanism. Can J Bot 73:746-757
3. Wilkins TA, Jernstedt JA (1999) Molecular genetics of developing cotton fibers. In: Basra AM (ed) Cotton fibers. Hawthorne Press, New York, pp 231-267
4. Kim HJ, Triplett BA (2001) Cotton fiber growth in planta and in vitro: models for plant cell elongation and cell wall biogenesis. Plant Physiol 127:1361-1366
5. Loguerico LL, Zhang JQ, Wilkins TA (1999) Differential regulation of six novel MYB-domain genes defines two distinct expression patterns in allotetraploid cotton (Gossypium hirsutum L.). Mol Gen Genet 261:660-671
6. Suo J, Liang X, Pu L, Zhang Y, Xue Y (2003) Identification of GhMYB109 encoding a R2R3 MYB transcription factor that expressed specifically in fiber initials and elongating fibers of cotton (Gossypium hirsutum L.). Biochim Biophys Acta 1630: 25-34
7. Pu L, Li Q, Fan X, Yang W, Xue Y (2008) The R2R3 MYB transcription factor GhMYB109 is required for cotton fiber development. Genetics 180:811-820
8. Wang S, Wang JW, Yu N, Li CH, Luo B, Gou JY, Wang LJ, Chen XY (2004) Control of plant trichome development by a cotton fiber MYB gene. Plant Cell 16:2323-2334
9. Wu Y, Machado AC, White RG, Llewellyn DJ, Dennis ES (2006) Expression profiling identifies genes expressed early during lint fibre initiation in cotton. Plant Cell Physiol 47:107-127
10. Wu Y, Llewellyn DJ, White R, Ruggiero K, Al-Ghazi Y, Dennis ES (2007) Laser capture microdissection and cDNA microarrays used to generate gene expression profiles of the rapidly expanding fibre initial cells on the surface of cotton ovules. Planta 226: 1475-1490
11. Machado AC, Wu YR, Yang YM, Llewellyn DJ, Dennis ES (2009) The MYB transcription factor GhMYB25 regulates early fibre and trichome development. Plant J 59:52-62
12. Barg R, Sobolev I, Eilon T, Gur A, Chmelnitsky I, Shabtai S, Grotewold E, Salts Y (2005) The tomato early fruit specific gene Lefsm1 defines anovel class of plant-specific SANT MYB domain proteins. Planta 221:197-211
13. Corley SB, Carpenter R, Copsey L, Coen E (2005) Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proceedings of the National Academy of Sciences USA 102:5068-5073
14. Costa MMR, Fox S, Hana AI, Baxter C, Coen E (2005) Evolution of regulatory interactions controlling floral asymmetry. Development 132:5093-5101
15. Almeida J, Rocheta M, Galego L (1997) Genetic control of flower shape in Antirrhinum majus. Development 124:1387-1392
16. Galego L, Almeida J (2002) Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev 16:880-891
17. Baxter CE, Costa MM, Coen E (2007) Diversification and cooption of RAD-like genes in the evolution of floral asymmetry. Plant J 52:105-113
18. Zhou XR, Wang YZ, Smith JF, Chen R (2008) Altered expression patterns of TCP and MYB genes relating to the floral developmental transition from initial zygomorphy to actinomorphic in Bournea (Gesneriaceae). New Phytol 178:532-543
19. Pagnussat GC, Yu HJ, Ngo QA, Rajani S, Mayalagu S, Johnson CS, Capron A, Xie LF, Ye D, Sundaresan V (2005) Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development 132:603-614
20. Hamaguchi A, Yamashino T, Koizumi N, Kiba T, Kojima M, Sakakibara H, Mizuno T (2008) A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis. Biosci Biotechnol Biochem 72:2687-2696
21. Hasenfratz MP, Tsou CL, Wilkins TA (1995) Expression of two related vacuolar (H ?)-ATPase 16-kilodalton proteolipid genes is differentially regulated in a tissue-specific manner. Plant Physiol 108:1395-1404
22. Lee J, Woodward A, Chen J (2007) Gene expression changes and early events in cotton fibre development. Ann Bot 100: 1391-1401
23. Liu X, Zuo K, Zhang F, Li Y, Xu J, Zhang L, Sun X, Tang K (2009) Identification and expression profile of GbAGL2, a Cclass gene from Gossypium barbadense. J Biosci 34:941-951
24. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
25. Peitsch MC (1995) Protein modeling by E-Mail. Bio/Technology 13:658-660
26. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISSMODEL workspace: a web-based environment for protein structure homology modeling. Bioinformatics 22:195-201
27. Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009) The SWISS-MODEL repository and associated resources. Nucleic Acids Res 37:387-392
28. Stevenson CE, Burton N, Costa M, Nath U, Dixon RA, Coen ES, Lawson DM (2005) Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr Sect F Struct Biol Cryst Commun 61:885-888
29. Stevenson CE, Burton N, Costa MM, Nath U, Dixon RA, Coen ES, Lawson DM (2006) Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins 65:1041-1045
30. Li CH, Zhu YQ, Meng YL, Wang JW, Xu KX, Zhang TZ, ChenXY (2002) Isolation of genes preferentially expressed in cotton fibers by cDNA filter arrays and RT-PCR. Plant Sci 163:1113-1120