-
1
-
-
0032974993
-
Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
-
Acinas SG. Anton J, Rodriguez-Valera F. 1999. Diversity of free living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16s RNA. Appl Environ Microbiol. 65:514-522 (Pubitemid 29075091)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.2
, pp. 514-522
-
-
Acinas, S.G.1
Anton, J.2
Rodriguez-Valera, F.3
-
2
-
-
0025099312
-
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
-
Amaru RI, Krumholz L, Stahl DA. 1990. Fluorescent-oligoncleotide probing of whole cells for determinative, phylogenetic, and environments studies in microbiology. J Bacteriol, 172:762-770 (Pubitemid 20070387)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.2
, pp. 762-770
-
-
Amann, R.I.1
Krumholz, L.2
Stahl, D.A.3
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev, 59:143-169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
0033151605
-
16S rDNA methods in soil microbiology
-
DOI 10.1016/S0958-1669(99)80039-1
-
Anthony G, O'Donnell, Görres EG. 1999. 16S rDNA methods in soil microbiology. Current Opinion Biotechnol, 10:225-229 (Pubitemid 29251163)
-
(1999)
Current Opinion in Biotechnology
, vol.10
, Issue.3
, pp. 225-229
-
-
O'Donnell, A.G.1
Gorres, H.E.2
-
5
-
-
0029941934
-
Rapid, direct extraction of DNA from soils for PCR analysis using polyvinylpolypyrrolidone spin columns
-
DOI 10.1016/0378-1097(96)00072-9
-
Barthelet M, Whyte LG, Greer CW. 1996. Rapid, direct extraction of DNA from soils for PCR analysis using polyvinyl polypyrrolidone spin columns. FEMS Microbiol Lett, 138: 17-22 (Pubitemid 26183242)
-
(1996)
FEMS Microbiology Letters
, vol.138
, Issue.1
, pp. 17-22
-
-
Berthelet, M.1
Whyte, L.G.2
Greer, C.W.3
-
6
-
-
0000466509
-
"Breathprints" at the microbial level
-
Bochner B, 1989. "Breathprints" at the microbial level. ASM News, 55: 536-539
-
(1989)
ASM News
, vol.55
, pp. 536-539
-
-
Bochner, B.1
-
7
-
-
0030011823
-
Molecular microbial diversity of an agricultural soil in Wisconsin
-
Borneman J, Skroch PW, O'Sullivan KM, et al. 1996, Molecular microbial diversity of an agricultural soil in Wisconsin. Appl Environ Microbiol, 62:1935-1943 (Pubitemid 26168984)
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.6
, pp. 1935-1943
-
-
Borneman, J.1
Skroch, P.W.2
O'Sullivan, K.M.3
Palus, J.A.4
Rumjanek, N.G.5
Jansen, J.L.6
Nienhuis, J.7
Triplett, E.W.8
-
8
-
-
0030860238
-
Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman J, Triplett EW. 1997 Molecular microbial diversity in soils from eastern Amazonian: Evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol, 63:2647-2653 (Pubitemid 27292855)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.7
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
9
-
-
0029474334
-
Fatty acid methyl ester (FAME) profiles as measures of soil microbial community structure
-
Cavigelli MA, Robertson GP. Klug Mj. 1995. Fatty acid methyl esters (FAME) profiles as measures of soil microbial community structure. Plant Soil, 170:99-113 (Pubitemid 26450472)
-
(1995)
Plant & Soil
, vol.170
, Issue.1
, pp. 99-113
-
-
Cavigelli, M.A.1
Robertson, G.P.2
Klug, M.J.3
-
10
-
-
0031149569
-
Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
-
Chandler DP, Fredrickson JK, Brockman FJ. 1997. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol Ecol, 6:475-482 (Pubitemid 27210835)
-
(1997)
Molecular Ecology
, vol.6
, Issue.5
, pp. 475-482
-
-
Chandler, D.P.1
Fredrickson, J.K.2
Brockman, F.J.3
-
11
-
-
0032432258
-
Analysis of broad-scale differences in microbial community composition of two pristine forest soils
-
Chatzinotas A. Sandaa RA, Schdnhuber W, et al. 1998. Analysis of broad-scale differences in microbial community composition of two pristine foiest soils. Syst Appl Microbiol, 21:579-587 (Pubitemid 29027340)
-
(1998)
Systematic and Applied Microbiology
, vol.21
, Issue.4
, pp. 579-587
-
-
Chatzinotas, A.1
Sandaa, R.-A.2
Schonhuber, W.3
Amann, R.4
Daae, F.L.5
Torsvik, V.6
Zeyer, J.7
Hahn, D.8
-
12
-
-
0033932424
-
%G+C profiling and cross hybridisation of microbial DNA reveals great variation in below-ground community structure in UK upland grasslands
-
DOI 10.1016/S0929-1393(00)00045-7, PII S0929139300000457
-
Cegg CD, Ritz K, Griffiths BS. 2000. %G + C profiling and cross hybridization of microbial DNA reveals great variation in below ground community structure in UK upland grasslands. Appl Soil Ecol, 14:125-134 (Pubitemid 30427658)
-
(2000)
Applied Soil Ecology
, vol.14
, Issue.2
, pp. 125-134
-
-
Clegg, C.D.1
Ritz, K.2
Griffiths, B.S.3
-
13
-
-
58149325616
-
Changes in levels, species and DNA profiles of soil microorganisms associated with cotton expressing the Bacillus thuringiensis var. kursttiki endotoxin
-
Donegan KK, Palm CJ, Fieland VJ, et al. 1995, Changes in levels, species and DNA profiles of soil microorganisms associated with cotton expressing the Bacillus thuringiensis var. kursttiki endotoxin. Appl Soil Ecol, 2:111-124
-
(1995)
Appl Soil Ecol
, vol.2
, pp. 111-124
-
-
Donegan, K.K.1
Palm, C.J.2
Fieland, V.J.3
-
14
-
-
0032914126
-
Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
-
Dunbar J, Takala S, Bams SM, et al. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16s rRNA gene cloning. Appl Environ Microbiol, 65:1662-1669 (Pubitemid 29173699)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.4
, pp. 1662-1669
-
-
Dunbar, J.1
Takala, S.2
Barns, S.M.3
Davis, J.A.4
Kuske, C.R.5
-
15
-
-
0031831891
-
Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the soil environment
-
DOI 10.1016/S0167-7012(98)00025-6, PII S0167701298000256
-
Elsas JD van, Duarte CF, Rosa do AS, et al. 1998. Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the soil environment. J Mcrobiol Meth, 32:133-154 (Pubitemid 28246402)
-
(1998)
Journal of Microbiological Methods
, vol.32
, Issue.2
, pp. 133-154
-
-
Van Elsas, J.D.1
Duarte, G.F.2
Rosado, A.S.3
Smalla, K.4
-
16
-
-
0001110101
-
Bacterial and fungal activities in sod: Separation of bacteria and fungi by a rapid fractionated centrifugal kin technique
-
FiEgri A, Torsvik VL, Gokseyr J. 1977. Bacterial and fungal activities in sod: separation of bacteria and fungi by a rapid fractionated centrifugal kin technique. Soil Biol Biochem, 9:105-112
-
(1977)
Soil Biol Biochem
, vol.9
, pp. 105-112
-
-
FiEgri, A.1
Torsvik, V.L.2
Gokseyr, J.3
-
17
-
-
0033025914
-
Effect of phenyl urea herbicides on soil communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles
-
Fantroussi SE, Verscbuere L, Verstraete W, et al. 1999. Effect of phenyl urea herbicides on soil communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles, Appl Environ Microbiol, 65:982-988
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 982-988
-
-
Fantroussi, S.E.1
Verscbuere, L.2
Verstraete, W.3
-
18
-
-
0032876852
-
Prokaryotic genome size and SSU rDNA copy number: Estimation of microbial relative abundance from a mixed population
-
DOI 10.1007/s002489900162
-
Fogel GB, Collins CR, Li J, et al, 1999. Prokaryotic genome size and SSU rDNA copy number: Estimation of microbial relative abundance from a mixed population. Microbiol Ecol, 38:93-113 (Pubitemid 29412122)
-
(1999)
Microbial Ecology
, vol.38
, Issue.2
, pp. 93-113
-
-
Fogel, G.B.1
Collins, C.R.2
Li, J.3
Brunk, C.F.4
-
19
-
-
0027797246
-
Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis
-
Frostegard A, Biath E, Tunlid A. 1993. Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipids fatty arid analysis. Soil Biol Biochem, 25:723-730 (Pubitemid 24412647)
-
(1993)
Soil Biology & Biochemistry
, vol.25
, Issue.6
, pp. 723-730
-
-
Frostegard, A.1
Baath, E.2
Tunlid, A.3
-
20
-
-
0029661576
-
Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization
-
Garland JL. 1996. Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol Biochem, 28:213-221
-
(1996)
Soil Biol Biochem
, vol.28
, pp. 213-221
-
-
Garland, J.L.1
-
21
-
-
0025919424
-
Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
-
Garland JL, Mills AL. 1991. Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microbiol, 57:2351-2359
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 2351-2359
-
-
Garland, J.L.1
Mills, A.L.2
-
22
-
-
0032824027
-
Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis
-
DOI 10.1016/S0167-7012(99)00054-8, PII S0167701299000548
-
Gelsomino A, Keijzer-Woltere AC, Cacco G, et al. 1999. Assessment of bacteria] community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J Microbiol Meth, 38:1-15 (Pubitemid 29460974)
-
(1999)
Journal of Microbiological Methods
, vol.38
, Issue.1-2
, pp. 1-15
-
-
Gelsomino, A.1
Keijzer-Wolters, A.C.2
Cacco, G.3
Van Elsas, J.D.4
-
23
-
-
0028965663
-
Analysis of factors affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns
-
Haack SK, Garchow H, KJug MJ, et al. 1995. Analysis of factors affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns. Appl Environ Microbiol. 61:1458-1468
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1458-1468
-
-
Haack, S.K.1
Garchow, H.2
Kjug, M.J.3
-
24
-
-
0028236811
-
Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities
-
Haack SK, Garchow H, Odelson DA, et al. 1994. Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl Environ Microbiol, 60:2483-2493 (Pubitemid 24205750)
-
(1994)
Applied and Environmental Microbiology
, vol.60
, Issue.7
, pp. 2483-2493
-
-
Kidd Haack, S.1
Garchow, H.2
Odelson, D.A.3
Forney, L.J.4
Klug, M.J.5
-
25
-
-
0031842162
-
Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region
-
DOI 10.1016/S0168-6496(98)00031-2, PII S0168649698000312
-
Hansen MC, Tolker-Nielsen T, Givskov M, et al. 1998. Biased 16s rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol Ecol, 26:141-149 (Pubitemid 28271964)
-
(1998)
FEMS Microbiology Ecology
, vol.26
, Issue.2
, pp. 141-149
-
-
Hansen, M.C.1
Tolker-Nielsen, T.2
Givskov, M.3
Molin, S.4
-
26
-
-
0031982528
-
Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
-
DOI 10.1007/s002489900056
-
Head IM, Saunders JR, Pickup RW. 1998. Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms. Microbiol Ecol, 35:1-21 (Pubitemid 28031174)
-
(1998)
Microbial Ecology
, vol.35
, Issue.1
, pp. 1-21
-
-
Head, I.M.1
Saunders, J.R.2
Pickup, R.W.3
-
27
-
-
0030739128
-
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
-
Heuer H, Krsek M, Baker P, et al. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel electrophoresis separation in denaturing gradients. Appl Environ Microbiol, 63:3233-3241 (Pubitemid 27337820)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.8
, pp. 3233-3241
-
-
Heuer, H.1
Krsek, M.2
Baker, P.3
Smalla, K.4
Wellington, E.M.H.5
-
28
-
-
0030985422
-
Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllosphere
-
DOI 10.1016/S0167-7012(97)00044-4, PII S0167701297000444
-
Heuer H, Smalla K. 1997. Evaluation of community level catabolic profiling using Biolog GN microplates to study microbial community changes in potato philosopher. J Microbiol Meth, 30:49-61 (Pubitemid 27387555)
-
(1997)
Journal of Microbiological Methods
, vol.30
, Issue.1
, pp. 49-61
-
-
Heuer, H.1
Smalla, K.2
-
29
-
-
0033858708
-
Methods for assessing the composition and diversity of soil microbial communities
-
DOI 10.1016/S0929-1393(00)00069-X, PII S092913930000069X
-
Hill GT, Mitkowski NA, Aldrich WL, et al. 2000. Methods for assessing the composition and diversity of soil microbial communities. Appl Soil Ecol, 15:25-36 (Pubitemid 30613142)
-
(2000)
Applied Soil Ecology
, vol.15
, Issue.1
, pp. 25-36
-
-
Hill, G.T.1
Mitkowski, N.A.2
Aldrich-Wolfe, L.3
Emele, L.R.4
Jurkonie, D.D.5
Ficke, A.6
Maldonado-Ramirez, S.7
Lynch, S.T.8
Nelson, E.B.9
-
30
-
-
0031817952
-
Phospholipid fatty acid profiles and carbon utilization patterns for analysis of microbial community structure under field and greenhouse conditions
-
DOI 10.1016/S0168-6496(98)00032-4, PII S0168649698000324
-
Ibekwe AM, Kennedy AC. 1998. Phospholipid fatty acid profiles and carbon utilization patterns for analysis of microbial community structure under field and green house conditions FEMS Microbiol Ecol, 26:151-163 (Pubitemid 28271965)
-
(1998)
FEMS Microbiology Ecology
, vol.26
, Issue.2
, pp. 151-163
-
-
Ibekwe, A.M.1
Kennedy, A.C.2
-
31
-
-
0029668191
-
Changes in functional abilities of the microbial community during composing of manure
-
Insam H, Amor K, Renner M, et al. 1996. Changes in functional abilities of the microbial community during composing of manure. Microbiol Ecol, 31:77-87
-
(1996)
Microbiol Ecol
, vol.31
, pp. 77-87
-
-
Insam, H.1
Amor, K.2
Renner, M.3
-
32
-
-
0034982818
-
Developments in soil microbiology since the mid 1960s
-
DOI 10.1016/S0016-7061(01)00029-5, PII S0016706101000295
-
Insam H. 2001. Development in soil microbiology since the mid 1960s. Geoderma, 100:389-402 (Pubitemid 32515915)
-
(2001)
Geoderma
, vol.100
, Issue.3-4
, pp. 389-402
-
-
Insam, H.1
-
33
-
-
0034954171
-
Pesticide effects on bacterial diversity in agricultural soils - A review
-
DOI 10.1007/s003740100351
-
Johnsen K, Jacobsen CS, Torsvik V. 2001. Pesticide effects on bacterial diversity in agricultural soils - A review. Biol Fen Soils, 33: 443-453 (Pubitemid 32643772)
-
(2001)
Biology and Fertility of Soils
, vol.33
, Issue.6
, pp. 443-453
-
-
Johnsen, K.1
Jacobsen, C.S.2
Torsvik, V.3
Sorensen, J.4
-
34
-
-
0033001947
-
Diversity of Pseudomonas strains isolated with King's B and Gould's S1 agar determined by repetitive extragenic palindromic-polymerase chain reaction, 16S rDNA sequencing and Fourier transform infrared spectroscopy characterisation
-
DOI 10.1016/S0378-1097(99)00065-8, PII S0378109799000658
-
Johnsen K, Nielsen P, 1999. Diversity of pseudomonas strains isolated with King's B and Gould' SI agar determined by repetitive estrogenic palindrome. Polymerase chain reaction, 16S rDNA sequencing and fourier transform infrared spectroscopy characterization. FEMS Microbiol Lett, 173:155-162 (Pubitemid 29132786)
-
(1999)
FEMS Microbiology Letters
, vol.173
, Issue.1
, pp. 155-162
-
-
Johnsen, K.1
Nielsen, P.2
-
35
-
-
0031920135
-
The use of carbon substrate utilization patterns in environmental and ecological microbiology
-
DOI 10.1007/s002489900065
-
Konopka A, Oliver L, Turco RFJ. 1998. The use of carbon substrate utilisation patterns in environmental and ecological microbiology. Microbiol Ecol, 35:103-115 (Pubitemid 28190238)
-
(1998)
Microbial Ecology
, vol.35
, Issue.2
, pp. 103-115
-
-
Konopka, A.1
Oliver, L.2
Turco Jr., R.F.3
-
36
-
-
0030754258
-
Detection and characterization of fungal infections of Ammophila arenaria (Marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA
-
Kowalchuk GA, Gerards S. Woldendorp JW. 1997. Detection and characterization of fungal infections of Ammophila armaria (Marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18 S rDNA. Appl Environ Microbiol, 63: 3858-3865 (Pubitemid 27411339)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.10
, pp. 3858-3865
-
-
Kowalchuk, G.A.1
Gerards, S.2
Woldendorp, J.W.3
-
37
-
-
0000608592
-
The genus Nocardiopsis
-
Balows A, TrUper HG, Dworkin M eds. New York, Berlin, Heidelberg: Springer
-
Kroppenstedt RM. 1992. The genus Nocardiopsis. In: Balows A, TrUper HG, Dworkin M eds. The Prokaryotes. New York, Berlin, Heidelberg: Springer. 1139-1156
-
(1992)
The Prokaryotes
, pp. 1139-1156
-
-
Kroppenstedt, R.M.1
-
38
-
-
0040198916
-
Lipids in bacterial taxonomy
-
O' Leary WM ed. Boca Raton, Fla: CRC
-
Lechevalier MP. 1989. Lipids in bacterial taxonomy. In: O' Leary WM ed. Practical Handbook of Microbiology. Boca Raton, Fla: CRC. 455-561
-
(1989)
Practical Handbook of Microbiology
, pp. 455-561
-
-
Lechevalier, M.P.1
-
39
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu WT, Marsh TL, Cheng H, et al. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16s rRNA. Appl Environ Microbiol. 63:4516-4522 (Pubitemid 27485783)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.11
, pp. 4516-4522
-
-
Liu, W.-T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
40
-
-
0344114215
-
Comparison of agar media for counts of viable bacteria
-
Martin JK. 1975. Comparison of agar media for counts of viable bacteria. Soil Biol Biochem, 7:401-402
-
(1975)
Soil Biol Biochem
, vol.7
, pp. 401-402
-
-
Martin, J.K.1
-
41
-
-
0035012466
-
Impact of cultivation on characterization of species composition of soil bacterial communities
-
McCaig AE, Grayston SJ, Prosser JI, et al. 2001. Impact of cultivation on characterization of species composition of soil bacterial communities. FEMS Microbiol Ecol, 35:37-49
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 37-49
-
-
McCaig, A.E.1
Grayston, S.J.2
Prosser, J.I.3
-
42
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder MM, Arrieta JM, Muyzer G, et al. 1999. Optimization of terminal, restriction fragment length Polymorphism analysis for complex marine bacteria plankton communities and comparison with denaturing gradient gel electrophoresis. Appl Environ Microbiol, 65, 3518-3525 (Pubitemid 29398980)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.8
, pp. 3518-3525
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.J.5
-
43
-
-
0033152336
-
DGGE/TGGE a method for identifying genes from natural ecosystems
-
DOI 10.1016/S1369-5274(99)80055-1
-
Muyzer G, 1999. DGGE/TGGE a method for identifying genes from natural ecosystems Current Opinion Microbiol, 2: 317-322 (Pubitemid 29260154)
-
(1999)
Current Opinion in Microbiology
, vol.2
, Issue.3
, pp. 317-322
-
-
Muyzer, G.1
-
44
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal ED, Uitterlinden AG. 1993. Profiling o(complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol, 59:695-700 (Pubitemid 23072343)
-
(1993)
Applied and Environmental Microbiology
, vol.59
, Issue.3
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
45
-
-
0035018373
-
Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia
-
DOI 10.1016/S0167-7012(01)00253-6, PII S0167701201002536
-
Niemi RM, Heiskanen I, Wallenius K, et al. 2001. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. J Microbiol Meth, 45:155-165 (Pubitemid 32424483)
-
(2001)
Journal of Microbiological Methods
, vol.45
, Issue.3
, pp. 155-165
-
-
Maarit Niemi, R.1
Heiskanen, I.2
Wallenius, K.3
Lindstrom, K.4
-
46
-
-
0029836897
-
Description of chlorophenol-degrading Pseudomonas sp. strains KF1(T), KF3, and NKF1 as a new species of the genus Sphingomonas, Sphingomonas subarctica sp. nov.
-
Nohynek LJ, Nurmiaho-Lasslla EL, Suhonen EL, et al. 1996. Description of chlorophenol-degrading Pseudomonas sp. strains kf1, kf3, and nklll as a new species of the genus Sphingomonas, Sphingomonas subarctica sp. Nov Int J Syst Bacterial, 46:1042-1055 (Pubitemid 26339231)
-
(1996)
International Journal of Systematic Bacteriology
, vol.46
, Issue.4
, pp. 1042-1055
-
-
Nohynek, L.J.1
Nurmiaho-Lassila, E.-L.2
Suhonen, E.L.3
Busse, H.-J.4
Mohammadi, M.5
Hantula, J.6
Rainey, F.7
Salkinoja-Salonen, M.S.8
-
47
-
-
0029796310
-
Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
-
Nübd U, Engelen B, Felske A, et al. 1996. Sequence heterogeneities of genes encoding 16S rRNAs in Faenibacillus polynyxa detected by temperature gradient gel electrophoresis. J Bacterial, 178:5636-5643 (Pubitemid 26327663)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.19
, pp. 5636-5643
-
-
Nubel, U.1
Engelen, B.2
Felsre, A.3
Snaidr, J.4
Wieshuber, A.5
Amann, R.I.6
Ludwig, W.7
Backhaus, H.8
-
48
-
-
0033830857
-
Soil molecular microbial ecology at age 20: Methodological challenges for the future
-
Ogram A. 2000. Soil molecular microbial ecology at age 20: Methodological challenges for the future. Soil Biol Biochem, 32:1499-1504
-
(2000)
Soil Biol Biochem
, vol.32
, pp. 1499-1504
-
-
Ogram, A.1
-
49
-
-
0001902087
-
Viability of sod bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups
-
Olsen RA, Bakken LR. 1987. Viability of sod bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups. Microbiol Ecol, 13:59-74
-
(1987)
Microbiol Ecol
, vol.13
, pp. 59-74
-
-
Olsen, R.A.1
Bakken, L.R.2
-
50
-
-
0034127563
-
Population and community level approaches for analysing microbial diversity in natural environments
-
DOI 10.1046/j.1461-0248.2000.00148.x
-
Øvreás L, 2000. Population and community level approaches for analyzing microbial diversity in natural environments. Ecol Letts, 3: 236-251 (Pubitemid 30334126)
-
(2000)
Ecology Letters
, vol.3
, Issue.3
, pp. 236-251
-
-
Ovreas, L.1
-
51
-
-
0032412146
-
Microbial diversity and community structure in two different agricultural soil communities
-
DOI 10.1007/s002489900117
-
Øvreás L, Torsvik V 1998. Microbial diversity and community structure in two different agricultural soil communities. Microbiol Ecol, 36:303-315 (Pubitemid 29014578)
-
(1998)
Microbial Ecology
, vol.36
, Issue.3
, pp. 303-315
-
-
Ovreas, L.1
Torsvik, V.2
-
52
-
-
0011116547
-
Microbial community structure and activity in wheat straw after inoculation with biological control organisms
-
DOI 10.1016/0929-1393(95)00068-2
-
Pfender WF, Fieland VP, Ganio LM, et al. 1996. Microbial community structure and activity in wheat straw after inoculation with biological control organism. Appl Soil Ecol, 3:69-78 (Pubitemid 126407320)
-
(1996)
Applied Soil Ecology
, vol.3
, Issue.1
, pp. 69-78
-
-
Pfender, W.F.1
Fieland, V.P.2
Ganio, L.M.3
Seidler, R.J.4
-
54
-
-
0036164871
-
Phospholipid fatty acids in forest soil four years after Organic matter removal and Soil compaction
-
DOI 10.1016/S0929-1393(01)00182-2, PII S0929139301001822
-
Ponder F Jr, Tadros M. 2002. Phospholipid fatty acids in forest soil four years after organic matter removal and sod compaction. Appl Soil Ecol, 19:173-182 (Pubitemid 34122441)
-
(2002)
Applied Soil Ecology
, vol.19
, Issue.2
, pp. 173-182
-
-
Ponder Jr., F.1
Tadros, M.2
-
55
-
-
0034123066
-
Monitoring complex bacterial communities using culture-independent molecular techniques: Application to soil environment
-
DOI 10.1016/S0923-2508(00)00136-4
-
Kanjard L, Poly F, Naiaret S. 2000. Monitoring complex bacterial communities using culture-independent molecular techniques: Application to soil environment. Res Microbial, 151:167-177 (Pubitemid 30353405)
-
(2000)
Research in Microbiology
, vol.151
, Issue.3
, pp. 167-177
-
-
Ranjard, L.1
Poly, F.2
Nazaret, S.3
-
56
-
-
0028165830
-
Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
-
Raskin L, Stromley JM, Rittmann BE, et al. 1994. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol, 32: 1232-1240 (Pubitemid 24113941)
-
(1994)
Applied and Environmental Microbiology
, vol.60
, Issue.4
, pp. 1232-1240
-
-
Raskin, L.1
Stromley, J.M.2
Rittmann, B.E.3
Stahl, D.A.4
-
58
-
-
0028166040
-
Potential application of a community hybridization technique for assessing changes in the population structure of soil microbial communities
-
Ritz K, Griffiths BS. 1994. Potential application of a community hybridization technique for assessing changes in the population structure of soil microbial communities. Soil Biol Biochem, 26: 963-971 (Pubitemid 2113733)
-
(1994)
Soil Biology and Biochemistry
, vol.26
, Issue.8
, pp. 963-971
-
-
Ritz, K.1
Griffiths, B.S.2
-
59
-
-
0032856426
-
Analysis of bacterial communities in heavy metal-contaminated soils at different levels of resolution
-
DOI 10.1016/S0168-6496(99)00062-8, PII S0168649699000628
-
Sandaa RA, Torsvik V, Engerø D, et al. 1999. Analysis of bacterial communities in heavy metal-contaminated soil at different levels of resolution. FEMS Microbiol Ecol, 30:237-251 (Pubitemid 29465748)
-
(1999)
FEMS Microbiology Ecology
, vol.30
, Issue.3
, pp. 237-251
-
-
Sandaa, R.-A.1
Torsvik, V.2
Enger, O.3
Daae, F.L.4
Castberg, T.5
Hahn, D.6
-
60
-
-
0000240137
-
The genus Bactericides and related taxa
-
Balows A, Trüper HG, Dworkin M eds. New York, Berlin, Heidelberg: Springer
-
Shah HN. 1992. The genus Bactericides and related taxa. In:Balows A, Trüper HG, Dworkin M eds. The Prokaryotes. New York, Berlin, Heidelberg:Springer. 3593-3608
-
(1992)
The Prokaryotes
, pp. 3593-3608
-
-
Shah, H.N.1
-
61
-
-
0000023099
-
Attachment of a 40-base-pair G + C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes
-
DOI 10.1073/pnas.86.1.232
-
Sheffield VC, Cox DR, Ierman LS, et al. 1989. Attachment of a 40base pair guartosine plus cytosine-rich sequence (guanosine cytosineclamp) to improved detection of single-base changes. Proc Natl Acad Sci USA, 86:232-236 (Pubitemid 19036361)
-
(1989)
Proceedings of the National Academy of Sciences of the United States of America
, vol.86
, Issue.1
, pp. 232-236
-
-
Sheffield, V.C.1
Cox, D.R.2
Lerman, L.S.3
Myers, R.M.4
-
62
-
-
0031977257
-
Analysis of BIOLOG GN substrate utilization patterns by microbial communities
-
Smalla K, Wachtendorf U, Heuer H, et al. 1998. Analysis of BIOLOG GN substrate utilization patterns by microbial communities. Appl Environ Microbiol, 64:1220-1225 (Pubitemid 28188374)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.4
, pp. 1220-1225
-
-
Smalla, K.1
Wachtendorf, U.2
Heuer, H.3
Liu, W.-T.4
Forney, L.5
-
63
-
-
0033014645
-
Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-am- plified genes encoding 18S rRNA and temperature gradient gel electrophoresis
-
Smit E, Leeflang P, Glandorf B, et al. 1999. Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-am- plified genes encoding 18S rRNA and temperature gradient gel electrophoresis. Appl Environ Microbiol, 65:2614-2621
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2614-2621
-
-
Smit, E.1
Leeflang, P.2
Glandorf, B.3
-
64
-
-
0000798570
-
Phonotypical divergences between populations of soil bacteria isolated on different media
-
Sorheim R, Torsvik VL, Goksøyr J. 1989. Phonotypical divergences between populations of soil bacteria isolated on different media. Microbiol Ecol, 17:181-192
-
(1989)
Microbiol Ecol
, vol.17
, pp. 181-192
-
-
Sorheim, R.1
Torsvik, V.L.2
Goksøyr, J.3
-
65
-
-
0032917873
-
Phospholipid fatty acid profiles as indicators for the microbial community structure in soils along a climatic transect in the Judean Desert
-
DOI 10.1007/s003740050496
-
Steinberger Y, Zelles L, Bai QY, et al. 1999. Phospholipid fatty acid profiles as indicators for microbial community structure and biodiversity in soils along a climatic transect in the Judean desert. Biol Fert Soils. 28: 292-300 (Pubitemid 29051725)
-
(1999)
Biology and Fertility of Soils
, vol.28
, Issue.3
, pp. 292-300
-
-
Steinberger, Y.1
Zelles, L.2
Bai, Q.Y.3
Von Lutzow, M.4
Munch, J.C.5
-
66
-
-
0030613353
-
Variation in microbial community structure in two boreal peat lands as determined by analysis of phospholipid fatty acid profiles
-
Sundh I, Nilsson M, Borgá P. 1997. Variation in microbial community structure in two boreal peat lands as determined by analysis of phospholipid fatty acid profiles. Appl Environ Microbiol, 63:1476-1482
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1476-1482
-
-
Sundh, I.1
Nilsson, M.2
Borgá, P.3
-
67
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki MT, Giovannoni SJ. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol, 64:625-630 (Pubitemid 26047427)
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.2
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
68
-
-
0027202733
-
Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast
-
Tebbe CC, Vahjen W. 1993. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl Environ Microbial, 59:2657-2665 (Pubitemid 23223011)
-
(1993)
Applied and Environmental Microbiology
, vol.59
, Issue.8
, pp. 2657-2665
-
-
Tebbe, C.C.1
Vahjen, W.2
-
69
-
-
0032832253
-
Opening the black box of soil microbial diversity
-
DOI 10.1016/S0929-1393(99)00026-8, PII S0929139399000268
-
Tiedje JM, Asuming-Brempong S, Niisslein K, et al. 1999. Opening the black box of soil microbial diversity. Appl Soil Ecol, 13: 109-122 (Pubitemid 29478419)
-
(1999)
Applied Soil Ecology
, vol.13
, Issue.2
, pp. 109-122
-
-
Tiedje, J.M.1
Asuming-Brempong, S.2
Nusslein, K.3
Marsh, T.L.4
Flynn, S.J.5
-
70
-
-
0036270789
-
Microbial diversity and function in soil: From genes to ecosystems
-
DOI 10.1016/S1369-5274(02)00324-7
-
Torsvik V, Øvreás L. 2002. Microbial diversity and function in soil: From genes to ecosystems. Current Opinion Microbiol, 5:240-245 (Pubitemid 34614934)
-
(2002)
Current Opinion in Microbiology
, vol.5
, Issue.3
, pp. 240-245
-
-
Torsvik, V.1
Ovreas, L.2
-
71
-
-
0002649845
-
Extraction, purification, and analysis of DNA from soil bacteria
-
Trevors JT, van Elsas JD eds. New York, Berlin, Heidelberg: Springer
-
Torsvik V, Daae FL, Goksøyr J. 1995. Extraction, purification, and analysis of DNA from soil bacteria. In: Trevors JT, van Elsas JD eds. Nucleic Acids in the Environment: Methods and Applications. New York, Berlin, Heidelberg:Springer. 9-48
-
(1995)
Nucleic Acids in the Environment: Methods and Applications
, pp. 9-48
-
-
Torsvik, V.1
Daae, F.L.2
Goksøyr, J.3
-
72
-
-
0032219204
-
Novel techniques for analysing microbial diversity in natural and perturbed environments
-
DOI 10.1016/S0168-1656(98)00103-5, PII S0168165698001035
-
Torsvik V, Daae FL, Sandaa RA, et al. 1998. Novel techniques for analyzing microbial diversity in natural and perturbed environments. J Biotech, 64:53-62 (Pubitemid 29027784)
-
(1998)
Journal of Biotechnology
, vol.64
, Issue.1
, pp. 53-62
-
-
Torsvik, V.1
Daae, F.L.2
Sandaa, R.-A.3
Ovreas, L.4
-
73
-
-
0025256110
-
Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria
-
Torsvik V, Sake K, Stsrheim R, Goksøyr J. 1990. Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria. Appl Environ Microbiol, 56:776-781 (Pubitemid 20088453)
-
(1990)
Applied and Environmental Microbiology
, vol.56
, Issue.3
, pp. 776-781
-
-
Torsvik, V.1
Salte, K.2
Sorheim, R.3
Goksoyr, J.4
-
74
-
-
0000008516
-
Bmchemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial community in soil
-
Stotzky G, Bollag JM eds. New York: Dekker
-
Tunbd A, White DC. 1991. Bmchemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial community in soil. In:Stotzky G, Bollag JM eds. Soil Biochemistry. New York: Dekker. 229-262
-
(1991)
Soil Biochemistry
, pp. 229-262
-
-
Tunbd, A.1
White, D.C.2
-
75
-
-
0029416556
-
Carbon source utilization of soil extracted microorganisms as a tool to detect the effect of soil supplemented with genetically engineered and non-engineered Corynebactrium glutamicum and a recombinant peptide at the community level
-
Vahjen W, Munch JC, Tebbe CC. 1995. Carbon source utilization of soil extracted microorganisms as a tool to detect the effect of soil supplemented with genetically engineered and non-engineered Corynebactrium glutamicum and a recombinant peptide at the community level. FEMS Microbiol Ecol, 18:317-328
-
(1995)
FEMS Microbiol Ecol
, vol.18
, pp. 317-328
-
-
Vahjen, W.1
Munch, J.C.2
Tebbe, C.C.3
-
76
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
Vandamme P, Pot B, Gillis M, et al, 1996. Polyphasic taxonomy, a consensus approach to bacterial systematic. Microbiol Rev, 60:407-438 (Pubitemid 26170913)
-
(1996)
Microbiological Reviews
, vol.60
, Issue.2
, pp. 407-438
-
-
Vandamme, P.1
Pot, B.2
Gillis, M.3
De Vos, P.4
Kersters, K.5
Swings, J.6
-
77
-
-
0029858703
-
Isolation and composition of inositolphosphorylceramide-type sphingolipids of hyphal forms of Candida albicans
-
Wells GB, Dickson RC, Lester LR. 1996. Isolation end composition of inositolphorylceramide type sphingolipids of hyphal forms of Candida albicans. J Bacterial, 178:6223-6226 (Pubitemid 26365702)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.21
, pp. 6223-6226
-
-
Wells, G.B.1
Dickson, R.C.2
Lester, R.L.3
-
78
-
-
0028981815
-
Determination of substrate utilization patterns of soil microbial communities: An approach to assess population changes after hydrocarbon pollution
-
Wllnsche L, Brüggemann L, Babel W. 1995. Determination of substrate utililization patens of soil microbial communities: An approach to assess population changes after hydrocarbon pollution. FEMS Microbiol Ecol, 17:295-305 (Pubitemid 26453865)
-
(1995)
FEMS Microbiology Ecology
, vol.17
, Issue.4
, pp. 295-305
-
-
Wunsche, L.1
Bruggemann, L.2
Babel, W.3
-
79
-
-
0032946688
-
Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: A review
-
DOI 10.1007/s003740050533
-
Zelles L. 1999. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: A review. Biol Fen Soils, 29:111-129 (Pubitemid 29235510)
-
(1999)
Biology and Fertility of Soils
, vol.29
, Issue.2
, pp. 111-129
-
-
Zelles, L.1
-
80
-
-
0001682047
-
Determination of phospholipid-and lipopolysaccharide-derived fatty acids as an estimate of microbial biomass and community structure in soils
-
Zelles L, Bai QY, Rackwitz R, et al, 1995. Determination of phospholipid-and lipopolysaccharide-derived fatty acids as an estimate of microbial biomass and community structure in soils. Biol Ferl Soils, 19:115-123
-
(1995)
Biol Ferl Soils
, vol.19
, pp. 115-123
-
-
Zelles, L.1
Bai, Q.Y.2
Rackwitz, R.3
-
81
-
-
0031238666
-
Changes in soil microbial properties and phospholipid fatty acid fractions after chloroform fumigation
-
DOI 10.1016/S0038-0717(97)00062-X, PII S003807179700062X
-
Zelles L, Palojärvi A, Kandeler E, et al. 1997. Changes in soil microbial properties and phospholipid fatty acid fractions after chloroform fumigation. Soil Biol Biochem, 29:1325-1336 (Pubitemid 27389507)
-
(1997)
Soil Biology and Biochemistry
, vol.29
, Issue.9-10
, pp. 1325-1336
-
-
Zelles, L.1
Palojarvi, A.2
Kandeler, E.3
Von Lutzow, M.4
Winter, K.5
Bai, Q.Y.6
|