Bacterial abl-like genes: Production of the archaeal osmolyte N ε-acetyl-η-lysine by homologous overexpression of the yodP-kamA genes in Bacillus subtilis

Applied Microbiology and Biotechnology

Volumn 91, Issue 3, 2011, Pages 689-697

  Müller, Stefan ^a   Hoffmann, Tamara ^b   Santos, Helena ^c   Saum, Stephan H ^a,d   Bremer, Erhard ^b   Müller, Volker ^a  

^a GOETHE UNIVERSITY   (Germany)

^b PHILIPPS UNIVERSITY MARBURG   (Germany)

^c INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

^d HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Archaea; Bacteria; Compatible solutes; Lysine 2,3 aminomutase; Methanogens; Salt adaptation

Indexed keywords

ACETYL TRANSFERASE; ARCHAEA; ARCHAEAL; BACILLUS SUBTILIS; BIOPHYSICAL PROPERTIES; COMPATIBLE SOLUTES; LARGE-SCALE PRODUCTION; LYSINE-2,3-AMINOMUTASE; MINIMAL MEDIAS; OSMOLYTES; OSMOTIC STRESS; OVER-EXPRESSION; RECOMBINANT STRAINS; SEQUENTIAL REACTION; SUBTILIS; TRANSCRIPTIONAL UNITS;

BACILLI; BACTERIOLOGY; GENES; TRANSCRIPTION; TRANSCRIPTION FACTORS;

AMINO ACIDS;

ABELSON KINASE; ACYLTRANSFERASE; ISOPROPYL BETA DEXTRO 1 THIOGALACTOPYRANOSIDE; LYSINE; LYSINE 2,3 AMINOMUTASE; N EPSILON ACETYL BETA LYSINE; PYRANOSIDE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SIGE; UNCLASSIFIED DRUG;

ADAPTIVE RADIATION; BACTERIUM; BIOCHEMICAL COMPOSITION; DATA SET; GENE EXPRESSION; GENOME; HOMOLOGY; OSMOSIS; PLASMID; RECOMBINATION; SALT;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENE; BACTERIAL GROWTH; GENE DELETION; GENE OVEREXPRESSION; KAMA BACTERIAL GENE; MOLECULAR CLONING; NONHUMAN; OSMOTIC STRESS; PLASMID; PROMOTER REGION; SPOROGENESIS; UPREGULATION; YODP BACTERIAL GENE;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; BACTERIAL PROTEINS; CARRIER PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, ABL; LYSINE; MULTIGENE FAMILY; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR;

ARCHAEA; BACILLACEAE; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); SIGE;

EID: 79960721717     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3301-8     Document Type: Article

References (48)

1. Bremer E (2002) Adaptation to changing osmolarity. In: Sonenshein AL (ed) Bacillus subtilis and its closest relatives: from genes to cells. ASM, Washington, pp 385-389
2. J Brill T Hoffmann H Putzer E Bremer 2011 T-box-mediated control of the anabolic proline biosynthetic genes of Bacillus subtilis Microbiology 157 977 987 1:CAS:528:DC%2BC3MXlslyjurY%3D
3. MB Burg JD Ferraris 2008 Intracellular organic osmolytes: function and regulation J Biol Chem 283 7309 7313 10.1074/jbc.R700042200 1:CAS:528: DC%2BD1cXjt1emtLc%3D
4. D Chen FJ Ruzicka PA Frey 2000 A novel lysine 2,3-aminomutase encoded by the yodO gene of Bacillus subtilis: characterization and the observation of organic radical intermediates Biochem J 348 539 549 10.1042/0264-6021:3480539 1:CAS:528:DC%2BD3cXlt1Smsrk%3D (Pubitemid 30410242)
5. TP Chirpich V Zappia RN Costilow HA Barker 1970 Lysine 2,3-aminomutase. Purification and properties of a pyridoxal phosphate and S-adenosylmethionine- activated enzyme J Biol Chem 245 1778 1789 1:CAS:528:DyaE3cXhtFOrtb8%3D
6. LN Csonka 1989 Physiological and genetic responses of bacteria to osmotic stress Microbiol Rev 53 121 147 1:CAS:528:DyaL1MXhs12rt7w%3D (Pubitemid 19080950)
7. F Dyda DC Klein AB Hickman 2000 GCN5-related N-acetyltransferases: a structural overview Annu Rev Biophys Biomol Struct 29 81 103 10.1146/annurev.biophys.29.1.81 1:CAS:528:DC%2BD3cXlsFOntbg%3D (Pubitemid 30599589)
8. J Errington 2003 Regulation of endospore formation in Bacillus subtilis Nat Rev Microbiol 1 117 126 10.1038/nrmicro750 1:CAS:528:DC%2BD3sXosl2hsr0%3D
9. P Fawcett P Eichenberger R Losick P Youngman 2000 The transcriptional profile of early to middle sporulation in Bacillus subtilis Proc Natl Acad Sci USA 97 8063 8068 10.1073/pnas.140209597 1:CAS:528:DC%2BD3cXkvFCms78%3D (Pubitemid 30460773)
10. EA Galinski HG Trüper 1994 Microbial behaviour in salt-stressed ecosystems FEMS Microbiol Rev 15 95 108 10.1111/j.1574-6976.1994.tb00128.x 1:CAS:528:DyaK2cXmslKhur4%3D (Pubitemid 24323951)
11. R Gardan G Rapoport M Debarbouille 1997 Role of the transcriptional activator RocR in the arginine-degradation pathway of Bacillus subtilis Mol Microbiol 24 825 837 10.1046/j.1365-2958.1997.3881754.x 1:CAS:528: DyaK2sXjvFaiu7g%3D (Pubitemid 27229727)
12. WD Grant 2004 Life at low water activity Philos Trans R Soc Lond B Biol Sci 359 1249 1266 10.1098/rstb.2004.1502 1:CAS:528:DC%2BD2cXnvFWhtro%3D (Pubitemid 39123215)
13. AM Guerout-Fleury K Shazand N Frandsen P Stragier 1995 Antibiotic-resistance cassettes for Bacillus subtilis Gene 167 335 336 10.1016/0378-1119(95)00652-4 1:CAS:528:DyaK28XlvVOntA%3D%3D (Pubitemid 26035922)
14. M Hagemann 2011 Molecular biology of cyanobacterial salt acclimation FEMS Microbiol Rev 35 87 123 10.1111/j.1574-6976.2010.00234.x 1:CAS:528: DC%2BC3MXis1Snsg%3D%3D
15. H Hahne U Mader A Otto F Bonn L Steil E Bremer M Hecker D Becher 2010 A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation J Bacteriol 192 870 882 10.1128/JB.01106-09 1:CAS:528:DC%2BC3cXjvVOisbk%3D
16. Harwood CR, Archibald AR (1990) Growth, maintenance and general techniques. In: Harwood CR, Cutting SM (eds) Molecular biological methods for Bacillus. Wiley, Chichester, pp 1-26
17. S Hohmann 2002 Osmotic stress signaling and osmoadaptation in yeasts Microbiol Mol Biol Rev 66 300 372 10.1128/MMBR.66.2.300-372.2002 1:CAS:528:DC%2BD38XltFSltrc%3D (Pubitemid 34625712)
18. B Kempf E Bremer 1998 Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments Arch Microbiol 170 319 330 10.1007/s002030050649 1:CAS:528:DyaK1cXntleltb0%3D (Pubitemid 28458129)
19. H Kuwayama S Obara T Morio M Katoh H Urushihara Y Tanaka 2002 PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors Nucleic Acids Res 30 E2 10.1093/nar/30.2.e2
20. MC Lai KR Sowers DE Robertson MF Roberts RP Gunsalus 1991 Distribution of compatible solutes in the halophilic methanogenic archaebacteria J Bacteriol 173 5352 5358 1:CAS:528:DyaK3MXmt1yjsr0%3D
21. D Le Rudulier AR Strøm AM Dandekar LT Smith RC Valentine 1984 Molecular biology of osmoregulation Science 224 1064 1068 10.1126/science.224. 4653.1064
22. G Lentzen T Schwarz 2006 Extremolytes: natural compounds from extremophiles for versatile applications Appl Microbiol Biotechnol 72 623 634 10.1007/s00253-006-0553-9 1:CAS:528:DC%2BD28XpvF2lsr8%3D (Pubitemid 44454921)
23. DD Martin RA Ciulla MF Roberts 1999 Osmoadaptation in archaea Appl Environ Microbiol 65 1815 1825 1:CAS:528:DyaK1MXjtVanurc%3D
24. JM Pastor M Salvador M Argandona V Bernal M Reina-Bueno LN Csonka JL Iborra C Vargas JJ Nieto M Canovas 2010 Ectoines in cell stress protection: uses and biotechnological production Biotechnol Adv 28 782 801 10.1016/j.biotechadv. 2010.06.005 1:CAS:528:DC%2BC3cXht1Wltr%2FF
25. ε- acetyl -β- lysine and growth at high salinity Appl Environ Microbiol 69 6047 6055 10.1128/AEM.69.10.6047-6055.2003 (Pubitemid 37280329)
26. K Pflüger A Ehrenreich K Salmon RP Gunsalus U Deppenmeier G Gottschalk V Müller 2007 Identification of genes involved in salt adaptation in the archaeon Methanosarcina mazei Gö1 using genome-wide gene expression profiling FEMS Microbiol Lett 277 79 89 10.1111/j.1574-6968.2007. 00941.x (Pubitemid 350045659)
27. Pflüger K, Wieland H, Müller V (2005) Osmoadaptation in methanogenic archaea: recent insights from a genomic perspective. In: Gunde-Cimerman N, Oren A, Plemenitas A (eds) Adaptation to life at hight salt concentrations in Archaea, Bacteria, and Eukarya. Springer, Dordrecht, pp 241-251
28. B Poolman E Glaasker 1998 Regulation of compatible solute accumulation in bacteria Mol Microbiol 29 397 407 10.1046/j.1365-2958.1998.00875.x 1:CAS:528:DyaK1cXltVOgu7Y%3D (Pubitemid 28330776)
29. MF Roberts 2005 Organic compatible solutes of halotolerant and halophilic microorganisms Saline Syst 1 5 10.1186/1746-1448-1-5
30. ε- acetyl -β- lysine, β-glutamine, and betaine in Methanohalophilus strain FDF1 suggested by nuclear magnetic resonance analyses J Bacteriol 174 6688 6693 1:CAS:528:DyaK3sXhvV2ruw%3D%3D
31. DE Robertson D Noll MF Roberts 1992 Free amino acid dynamics in marine methanogens - β-amino acids as compatible solutes J Biol Chem 267 14893 14901 1:CAS:528:DyaK38XlsVKrsb0%3D
32. M Roeler V Müller 2001 Osmoadaptation in bacteria and archaea: common principles and differences Environ Microbiol 3 743 754 10.1046/j.1462-2920.2001.00252.x (Pubitemid 34103164)
33. H Saito K Tatebayashi 2004 Regulation of the osmoregulatory HOG MAPK cascade in yeast J Biochem 136 267 272 10.1093/jb/mvh135 1:CAS:528: DC%2BD2cXhtFajtb%2FE (Pubitemid 39545784)
34. H Santos P Lamosa N Borges 2006 Characterization and quantification of compatible solutes in (hyper)thermophilic microorganisms Meth Microbiol 35 173 199 10.1016/S0580-9517(08)70011-4 1:CAS:528:DC%2BD1cXjtlCjtrg%3D
35. R Saum A Mingote H Santos V Müller 2009 A novel limb in the osmoregulatory network of Methanosarcina mazei Gö1: Nε-acetyl-β- lysine can be substituted by glutamate and alanine Environ Microbiol 11 1056 1065 10.1111/j.1462-2920.2008.01826.x 1:CAS:528:DC%2BD1MXmsVeqtrY%3D
36. SH Saum JF Sydow P Palm F Pfeiffer D Oesterhelt V Müller 2006 Biochemical and molecular characterization of the biosynthesis of glutamine and glutamate, two major compatible solutes in the moderately halophilic bacterium Halobacillus halophilus J Bacteriol 188 6808 6815 10.1128/JB.00781-06 1:CAS:528:DC%2BD28XhtVCgs7bI (Pubitemid 44497893)
37. D Sheikh-Hamad MC Gustin 2004 MAP kinases and the adaptive response to hypertonicity: functional preservation from yeast to mammals Am J Physiol Ren Physiol 287 F1102 F1110 10.1152/ajprenal.00225.2004 1:CAS:528:DC%2BD2cXhtVOmu7rK (Pubitemid 39507218)
38. + as compatible solutes for osmotic adaptation Appl Environ Microbiol 61 4382 4388 1:CAS:528:DyaK2MXpslCmtrc%3D
39. ε- acetyl -β- lysine an osmolyte synthesized by methanogenic archaebacteria Proc Natl Acad Sci USA 87 9083 9087 10.1073/pnas.87.23.9083 1:CAS:528:DyaK3MXnvVehtA%3D%3D (Pubitemid 120030569)
40. R Spanheimer V Müller 2008 The molecular basis of salt adaptation in Methanosarcina mazei Gö1 Arch Microbiol 190 271 279 10.1007/s00203-008- 0363-9 1:CAS:528:DC%2BD1cXhtFOmtrnM
41. L Steil T Hoffmann I Budde U Völker E Bremer 2003 Genome-wide transcriptional profiling analysis of adaptation of Bacillus subtilis to high salinity J Bacteriol 185 6358 6370 10.1128/JB.185.21.6358-6370.2003 1:CAS:528:DC%2BD3sXosV2ktr0%3D (Pubitemid 37305536)
42. L Steil M Serrano AO Henriques U Völker 2005 Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis Microbiology 151 399 420 10.1099/mic.0.27493-0 1:CAS:528:DC%2BD2MXhs1KgtLs%3D (Pubitemid 40277744)
43. TO Street DW Bolen GD Rose 2006 A molecular mechanism for osmolyte-induced protein stability Proc Natl Acad Sci USA 103 13997 14002 10.1073/pnas.0606236103 1:CAS:528:DC%2BD28XhtVCmur7N (Pubitemid 44488414)
44. ε- acetyl -β- lysine in green sulfur bacteria and Bacillus cereus CECT 148. FEMS Microbiol Lett. doi: 10.1111/j.1574-6968.2011.02254.x
45. I Vyrides H Santos A Mingote MJ Ray DC Stuckey 2010 Are compatible solutes compatible with biological treatment of saline wastewater? Batch and continuous studies using submerged anaerobic membrane bioreactors (SAMBRs) Environ Sci Technol 44 7437 7442 10.1021/es903981k 1:CAS:528:DC%2BC3cXhtFChs77O
46. AM Whatmore JA Chudek RH Reed 1990 The effects of osmotic upshock on the intracellular solute pools of Bacillus subtilis J Gen Microbiol 136 2527 2535 1:CAS:528:DyaK3MXpslyktg%3D%3D
47. JM Wood 1999 Osmosensing by bacteria: signals and membrane-based sensors Microbiol Mol Biol Rev 63 230 262 1:CAS:528:DyaK1MXitVert7s%3D (Pubitemid 29116093)
48. C Ziegler E Bremer R Kramer 2010 The BCCT family of carriers: from physiology to crystal structure Mol Microbiol 78 13 34 1:CAS:528: DC%2BC3cXhtleqsbfJ