The ColRS system is essential for the hunger response of glucose-growing Pseudomonas putida

BMC Microbiology

Volumn 11, Issue , 2011, Pages

  Putrinš, Marta ^a   Ainelo, Andres ^a   Ilves, Heili ^a   Hǒrak, Rita ^a  

^a UNIVERSITY OF TARTU   (Estonia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; COIRS SYSTEM; GLUCOSE; OPRB1 CHANNEL PROTEIN; OUTER MEMBRANE PROTEIN; UNCLASSIFIED DRUG; CARRIER PROTEIN;

ARTICLE; BACTERIAL GENE; BACTERIAL OUTER MEMBRANE; BACTERIAL STRAIN; BACTERIOLYSIS; BACTERIUM CULTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; CULTURE MEDIUM; CYTOLYSIS; DOWN REGULATION; GENE MUTATION; HUNGER; NONHUMAN; PROTEIN EXPRESSION; PSEUDOMONAS PUTIDA; UPREGULATION; CELL MEMBRANE; CHEMISTRY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; SIGNAL TRANSDUCTION;

BACTERIA (MICROORGANISMS); PSEUDOMONAS PUTIDA;

BACTERIAL OUTER MEMBRANE PROTEINS; BACTERIOLYSIS; CELL MEMBRANE; CULTURE MEDIA; GENE EXPRESSION REGULATION, BACTERIAL; GLUCOSE; MEMBRANE TRANSPORT PROTEINS; PSEUDOMONAS PUTIDA; SIGNAL TRANSDUCTION;

EID: 79960675510     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-11-170     Document Type: Article

References (68)

1. Stationary phase in gram-negative bacteria. Navarro Llorens JM, Tormo A, Martinez-Garcia E, FEMS Microbiol Rev 2010 34 4 476 495 10.1111/j.1574-6976. 2010.00213.x 20236330
2. Bacterial physiology, regulation and mutational adaptation in a chemostat environment. Ferenci T, Adv Microb Physiol 2008 53 169 229 17707145
3. Hungry bacteria - definition and properties of a nutritional state. Ferenci T, Environ Microbiol 2001 3 10 605 611 10.1046/j.1462-2920.2001.00238.x 11722540 (Pubitemid 33136754)
4. Physiological responses to nutrient limitation. Harder W, Dijkhuizen L, Annu Rev Microbiol 1983 37 1 23 10.1146/annurev.mi.37.100183.000245 6357049
5. Regulation of porin-mediated outer membrane permeability by nutrient limitation in Escherichia coli. Liu X, Ferenci T, J Bacteriol 1998 180 15 3917 3922 9683489 (Pubitemid 28361588)
6. An analysis of multifactorial influences on the transcriptional control of ompF and ompC porin expression under nutrient limitation. Liu X, Ferenci T, Microbiology 2001 147 2981 2989 11700349 (Pubitemid 33076987)
7. Derepression of LamB protein facilitates outer membrane permeation of carbohydrates into Escherichia coli under conditions of nutrient stress. Death A, Notley L, Ferenci T, J Bacteriol 1993 175 5 1475 1483 8444809 (Pubitemid 23081825)
8. Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Hua Q, Yang C, Oshima T, Mori H, Shimizu K, Appl Environ Microbiol 2004 70 4 2354 2366 10.1128/AEM.70.4.2354- 2366.2004 15066832 (Pubitemid 38500539)
9. The importance of the binding-protein-dependent Mgl system to the transport of glucose in Escherichia coli growing on low sugar concentrations. Death A, Ferenci T, Res Microbiol 1993 144 7 529 537 10.1016/0923-2508(93)90002- J 8310178
10. Thinking about bacterial populations as multicellular organisms. Shapiro JA, Annu Rev Microbiol 1998 52 81 104 10.1146/annurev.micro.52.1.81 9891794 (Pubitemid 28481188)
11. Patterns of gene expression in Bacillus subtilis colonies. Salhi B, Mendelson NH, J Bacteriol 1993 175 16 5000 5008 8349543 (Pubitemid 23232561)
12. Patterns of reporter gene expression in the phase diagram of Bacillus subtilis colony forms. Mendelson NH, Salhi B, J Bacteriol 1996 178 7 1980 1989 8606173 (Pubitemid 26110542)
13. Physiological heterogeneity in biofilms. Stewart PS, Franklin MJ, Nat Rev Microbiol 2008 6 3 199 210 10.1038/nrmicro1838 18264116 (Pubitemid 351256315)
14. Tolerance to the antimicrobial peptide colistin in Pseudomonas aeruginosa biofilms is linked to metabolically active cells, and depends on the pmr and mexAB-oprM genes. Pamp SJ, Gjermansen M, Johansen HK, Tolker-Nielsen T, Mol Microbiol 2008 68 1 223 240 10.1111/j.1365-2958.2008.06152.x 18312276 (Pubitemid 351363790)
15. Root colonization by Pseudomonas putida: love at first sight. Espinosa-Urgel M, Kolter R, Ramos JL, Microbiology 2002 148 341 343 11832496 (Pubitemid 34162775)
16. Pseudomonas putida: a cosmopolitan opportunist par excellence. Timmis KN, Environ Microbiol 2002 4 12 779 781 10.1046/j.1462-2920.2002.00365.x 12534460 (Pubitemid 36064168)
17. Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida. Wu X, Monchy S, Taghavi S, Zhu W, Ramos J, van der Lelie D, FEMS Microbiol Rev 2010 35 2 299 323
18. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS, Nucleic Acids Res 2009 37 483 488 10.1093/nar/gkn861 18978025
19. A two-component system plays an important role in the root-colonizing ability of Pseudomonas fluorescens strain WCS365. Dekkers LC, Bloemendaal CJ, de Weger LA, Wijffelman CA, Spaink HP, Lugtenberg BJ, Mol Plant Microbe Interact 1998 11 1 45 56 10.1094/MPMI.1998.11.1.45 9425686 (Pubitemid 28158964)
20. The two-component colR/S system of Pseudomonas fluorescens WCS365 plays a role in rhizosphere competence through maintaining the structure and function of the outer membrane. de Weert S, Dekkers LC, Bitter W, Tuinman S, Wijfjes AH, van Boxtel R, Lugtenberg BJ, FEMS Microbiol Ecol 2006 58 2 205 213 10.1111/j.1574-6941.2006.00158.x 17064262 (Pubitemid 44583804)
21. Caenorhabditis elegans semi-automated liquid screen reveals a specialized role for the chemotaxis gene cheB2 in Pseudomonas aeruginosa virulence. Garvis S, Munder A, Ball G, de Bentzmann S, Wiehlmann L, Ewbank JJ, Tümmler B, Filloux A, PLoS Pathog 2009 5 8 1000540 10.1371/journal.ppat.1000540 19662168
22. The ColR-ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions. Hrak R, Ilves H, Pruunsild P, Kuljus M, Kivisaar M, Mol Microbiol 2004 54 3 795 807 10.1111/j.1365-2958.2004.04311.x 15491368 (Pubitemid 39457299)
23. The ColRS two-component system regulates membrane functions and protects Pseudomonas putida against phenol. Kivistik PA, Putrin M, Püvi K, Ilves H, Kivisaar M, Hrak R, J Bacteriol 2006 188 23 8109 8117 10.1128/JB.01262-06 17012397 (Pubitemid 44845681)
24. Key genes involved in heavy-metal resistance in Pseudomonas putida CD2. Hu N, Zhao B, FEMS Microbiol Lett 2007 267 1 17 22 10.1111/j.1574-6968.2006. 00505.x 17166231 (Pubitemid 46066534)
25. ColRS two-component system prevents lysis of subpopulation of glucose-grown Pseudomonas putida. Putrin M, Ilves H, Kivisaar M, Hrak R, Environ Microbiol 2008 10 10 2886 2893 10.1111/j.1462-2920.2008.01705.x 18657172
26. Two modes of loss of the Tol function from Pseudomonas putida mt-2. Bayley SA, Duggleby CJ, Worsey MJ, Williams PA, Hardy KG, Broda P, Mol Gen Genet 1977 154 2 203 204 10.1007/BF00330838 895716 (Pubitemid 8130515)
27. Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440. Regenhardt D, Heuer H, Heim S, Fernandez DU, Strömpl C, Moore ER, Timmis KN, Environ Microbiol 2002 4 12 912 915 10.1046/j.1462-2920.2002.00368.x 12534472 (Pubitemid 36064180)
28. A short course in bacterial genetics: a laboratory manual and handbook for Echerichia coli and related bacteria. Miller JH, Cold Spring Harbour Laboratory Press, Cold Spring Harbour, NY 1992
29. Bacteriophages. Adams MH, Interscience Publishers Inc., New York 1959
30. Preparation of electrocompetent E. coli using salt-free growth medium. Sharma RC, Schimke RT, Biotechniques 1996 20 1 42 44 8770403 (Pubitemid 26023326)
31. Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis. O'Toole GA, Kolter R, Mol Microbiol 1998 28 3 449 461 10.1046/j.1365-2958.1998. 00797.x 9632250 (Pubitemid 28218392)
32. Role of the crc gene in catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway. Yuste L, Rojo F, J Bacteriol 2001 183 21 6197 6206 10.1128/JB.183.21.6197-6206.2001 11591662 (Pubitemid 34059391)
33. Growth medium composition-determined regulatory mechanisms are superimposed on CatR-mediated transcription from the pheBA and catBCA promoters in Pseudomonas putida. Tover A, Ojangu EL, Kivisaar M, Microbiology 2001 147 2149 2156 11495992 (Pubitemid 32785495)
34. The impact of ColRS two-component system and TtgABC efflux pump on phenol tolerance of Pseudomonas putida becomes evident only in growing bacteria. Putrin M, Ilves H, Lilje L, Kivisaar M, Hrak R, BMC Microbiol 2010 10 110 10.1186/1471-2180-10-110 20398259
35. Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor. Hrak R, Kivisaar M, J Bacteriol 1998 180 11 2822 2829 9603867 (Pubitemid 29122105)
36. In-gel digestion for mass spectrometric characterization of proteins and proteomes. Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M, Nat Protoc 2006 1 6 2856 2860 17406544
37. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Rappsilber J, Mann M, Ishihama Y, Nat Protoc 2007 2 8 1896 1906 10.1038/nprot.2007.261 17703201 (Pubitemid 47308128)
38. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Olsen JV, de Godoy LM, Li G, Macek B, Mortensen P, Pesch R, Makarov A, Lange O, Horning S, Mann M, Mol Cell Proteomics 2005 4 12 2010 2021 10.1074/mcp.T500030-MCP200 16249172 (Pubitemid 41830195)
39. The CbrA-CbrB two-component regulatory system controls the utilization of multiple carbon and nitrogen sources in Pseudomonas aeruginosa. Nishijyo T, Haas D, Itoh Y, Mol Microbiol 2001 40 4 917 931 10.1046/j.1365-2958.2001.02435.x 11401699 (Pubitemid 32523189)
40. Dual involvement of CbrAB and NtrBC in the regulation of histidine utilization in Pseudomonas fluorescens SBW25. Zhang XX, Rainey PB, Genetics 2008 178 1 185 195 10.1534/genetics.107.081984 18202367 (Pubitemid 351398740)
41. Influence of a putative ECF sigma factor on expression of the major outer membrane protein, OprF, in Pseudomonas aeruginosa and Pseudomonas fluorescens. Brinkman FS, Schoofs G, Hancock RE, De Mot R, J Bacteriol 1999 181 16 4746 4754 10438740 (Pubitemid 29383499)
42. Protein translocation across the bacterial cytoplasmic membrane. Driessen AJ, Nouwen N, Annu Rev Biochem 2008 77 643 667 10.1146/annurev.biochem.77. 061606.160747 18078384
43. The molecular chaperone SecB is released from the carboxy-terminus of SecA during initiation of precursor protein translocation. Fekkes P, van der Does C, Driessen AJ, Embo J 1997 16 20 6105 6113 10.1093/emboj/16.20.6105 9321390 (Pubitemid 27458330)
44. The carboxyl terminus of the Bacillus subtilis SecA is dispensable for protein secretion and viability. van Wely KH, Swaving J, Klein M, Freudl R, Driessen AJ, Microbiology 2000 146 2573 2581 11021932
45. Outer membrane of Pseudomonas aeruginosa: heat- 2-mercaptoethanol- modifiable proteins. Hancock RE, Carey AM, J Bacteriol 1979 140 3 902 910 118160 (Pubitemid 10184865)
46. Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: genomic and flux analysis. del Castillo T, Ramos JL, Rodriguez-Herva JJ, Fuhrer T, Sauer U, Duque E, J Bacteriol 2007 189 14 5142 5152 10.1128/JB.00203-07 17483213 (Pubitemid 47076060)
47. Purification of glucose-inducible outer membrane protein OprB of Pseudomonas putida and reconstitution of glucose-specific pores. Saravolac EG, Taylor NF, Benz R, Hancock RE, J Bacteriol 1991 173 16 4970 4976 1650338
48. Regulation by nutrient limitation. Ferenci T, Curr Opin Microbiol 1999 2 2 208 213 10.1016/S1369-5274(99)80036-8 10322163 (Pubitemid 29176947)
49. Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa. Sonnleitner E, Abdou L, Haas D, Proc Natl Acad Sci USA 2009 106 51 21866 21871 10.1073/pnas.0910308106 20080802
50. The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation. Moreno R, Marzi S, Romby P, Rojo F, Nucleic Acids Res 2009 37 22 7678 7690 10.1093/nar/gkp825 19825982
51. Carbon catabolite repression in Pseudomonas: optimizing metabolic versatility and interactions with the environment. Rojo F, FEMS Microbiol Rev 2010 34 5 658 684 20412307
52. Global regulation of food supply by Pseudomonas putida DOT-T1E. Daniels C, Godoy P, Duque E, Molina-Henares MA, de la Torre J, Del Arco JM, Herrera C, Segura A, Guazzaroni ME, Ferrer M, Ramos JL, J Bacteriol 2010 192 8 2169 2181 10.1128/JB.01129-09 20139187
53. The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: evidence from proteomic and genomic analyses. Moreno R, Martinez-Gomariz M, Yuste L, Gil C, Rojo F, Proteomics 2009 9 11 2910 2928 10.1002/pmic.200800918 19526543
54. Functional characterization of Pseudomonas fluorescens OprE and OprQ membrane proteins. Jaouen T, Coquet L, Marvin-Guy L, Orange N, Chevalier S, De E, Biochem Biophys Res Commun 2006 346 3 1048 1052 10.1016/j.bbrc.2006.06.013 16777062
55. Cloning and nucleotide sequence of anaerobically induced porin protein E1 (OprE) of Pseudomonas aeruginosa PAO1. Yamano Y, Nishikawa T, Komatsu Y, Mol Microbiol 1993 8 5 993 1004 10.1111/j.1365-2958.1993.tb01643.x 8394980 (Pubitemid 23171478)
56. Repression of the glucose-inducible outer-membrane protein OprB during utilization of aromatic compounds and organic acids in Pseudomonas putida CSV86. Shrivastava R, Basu B, Godbole A, Mathew MK, Apte SK, Phale PS, Microbiology 2011 157 1531 1540 10.1099/mic.0.047191-0 21330430
57. The OprB porin plays a central role in carbohydrate uptake in Pseudomonas aeruginosa. Wylie JL, Worobec EA, J Bacteriol 1995 177 11 3021 3026 7768797
58. Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Görke B, Stülke J, Nat Rev Microbiol 2008 6 8 613 624 10.1038/nrmicro1932 18628769 (Pubitemid 352006104)
59. A critical process controlled by MalT and OmpR is revealed through synthetic lethality. Reimann SA, Wolfe AJ, J Bacteriol 2009 191 16 5320 5324 10.1128/JB.00522-09 19502392
60. Constitutive Expression of the Maltoporin LamB in the Absence of OmpR Damages the Cell Envelope. Reimann SA, Wolfe AJ, J Bacteriol 2011 193 4 842 853 10.1128/JB.01004-10 21131484
61. The ColR/ColS Two-Component System Plays Multiple Roles in the Pathogenicity of the Citrus Canker Pathogen Xanthomonas citri subsp. citri. Yan Q, Wang N, J Bacteriol 2011 193 7 1590 1599 10.1128/JB.01415-10 21257774
62. Tomato seed and root exudate sugars: composition, utilization by Pseudomonas biocontrol strains and role in rhizosphere colonization. Lugtenberg BJ, Kravchenko LV, Simons M, Environ Microbiol 1999 1 5 439 446 10.1046/j.1462-2920.1999.00054.x 11207764
63. Plant-growth-promoting rhizobacteria. Lugtenberg B, Kamilova F, Annu Rev Microbiol 2009 63 541 556 10.1146/annurev.micro.62.081307.162918 19575558
64. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. Herrero M, de Lorenzo V, Timmis KN, J Bacteriol 1990 172 11 6557 6567 2172216 (Pubitemid 20372801)
65. beta-Glucuronidase (GUS) transposons for ecological and genetic studies of rhizobia and other gram-negative bacteria. Wilson KJ, Sessitsch A, Corbo JC, Giller KE, Akkermans AD, Jefferson RA, Microbiology 1995 141 1691 1705 10.1099/13500872-141-7-1691 7551037
66. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Figurski DH, Helinski DR, Proc Natl Acad Sci USA 1979 76 4 1648 1652 10.1073/pnas.76.4.1648 377280 (Pubitemid 9175374)
67. Effects of combination of different -10 hexamers and downstream sequences on stationary-phase-specific sigma factor sigma(S)-dependent transcription in Pseudomonas putida. Ojangu EL, Tover A, Teras R, Kivisaar M, J Bacteriol 2000 182 23 6707 6713 10.1128/JB.182.23.6707-6713.2000 11073916 (Pubitemid 32249254)
68. A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site. Koch B, Jensen LE, Nybroe O, J Microbiol Methods 2001 45 3 187 195 10.1016/S0167-7012(01)00246-9 11348676 (Pubitemid 32424486)