Erratum to: Construction and Characterization of the BAC Library for Common Carp Cyprinus Carpio L. And Establishment of Microsynteny with Zebrafish Danio Rerio (Mar Biotechnol, (2011), (706-712), 10.1007/s10126-010-9332-9);Construction and Characterization of the BAC Library for Common Carp Cyprinus Carpio L. And Establishment of Microsynteny with Zebrafish Danio Rerio

Marine Biotechnology

Volumn 13, Issue 4, 2011, Pages 706-712

  Li, Yan ^a,b   Xu, Peng ^a   Zhao, Zixia ^a   Wang, Jian ^a   Zhang, Yan ^a   Sun, Xiao Wen ^a  

^a SOUTH CHINA SEA FISHERIES RESEARCH INSTITUTE   (China)

^b SHANGHAI OCEAN UNIVERSITY   (China)

Author keywords

BAC; Common carp; Comparative mapping; Genome; Synteny

Indexed keywords

CLONING; GENES;

BAC-END SEQUENCING; BACTERIAL ARTIFICIAL CHROMOSOME LIBRARIES; COMMON CARP; COMPARATIVE GENOMICS; COMPARATIVE MAPPING; SYNTENY; THREE DIMENSIONS; ZEBRAFISH DANIO RERIO;

BIOMARKERS;

BACTERIUM; BIOTECHNOLOGY; CHROMOSOME; COMPARATIVE STUDY; CYPRINID; GENETIC STRUCTURE; GENOMICS; PLASMID; RELATEDNESS;

BACTERIA (MICROORGANISMS); CYPRINIDAE; CYPRINUS CARPIO; DANIO RERIO;

EID: 79960462494     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-011-9404-5     Document Type: Erratum

References (33)

1. Bowen NJ, Jordan IK (2002) Transposable elements and the evolution of eukaryotic complexity. Curr Issues Mol Biol 4: 65-76.
2. Cheng L, Liu L, Yu X, Wang D, Tong J (2010) A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers. Anim Genet 41: 191-198.
3. David L, Blum S, Feldman MW, Lavi U, Hillel J (2003) Recent duplication of the common carp (Cyprinus carpio L.) genome as revealed by analyses of microsatellite loci. Mol Biol Evol 20: 1425-1434.
4. Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194.
5. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
6. Geng FS, Zhou L, Gui JF (2005) Construction and characterization of a BAC library for Carassius auratus gibelio, a gynogenetic polyploid fish. Anim Genet 36: 535-536.
7. Han L, Zhao Z (2008) Comparative analysis of CpG islands in four fish genomes. Comp Funct Genomics: 565631.
8. Huan P, Zhang X, Li F, Zhang Y, Zhao C, Xiang J (2010) Chromosomal localization and molecular marker development of the lipopolysaccharide and beta-1, 3-glucan binding protein gene in the Zhikong scallop Chlamys farreri (Jones et Preston) (Pectinoida, Pectinidae). Genet Mol Biol 33: 36-43.
9. Jang S, Liu H, Su J, Dong F, Xiong F, Liao L, Wang Y, Zhu Z (2010) Construction and characterization of two bacterial artificial chromosome libraries of grass carp. Mar Biotechnol 12: 6.
10. Larkin DM, Lewin HA (2008) Construction of high-resolution comparative maps in mammals using BAC-end sequences. Meth Mol Biol 422: 79-90.
11. Leeb T, Vogl C, Zhu B, De Jong PJ, Binns MM, Chowdhary BP, Scharfe M, Jarek M, Nordsiek G, Schrader F, Blocker H (2006) A human-horse comparative map based on equine BAC end sequences. Genomics 87: 772-776.
12. Li S, Chou H-H (2004) Lucy2: an interactive DNA sequence quality trimming and vector removal tool. Bioinformatics 20: 2865-2866.
13. Li D, Kang D, Yin Q, Sun X, Liang L (2007) Microsatellite DNA marker analysis of genetic diversity in wild common carp (Cyprinus carpio L.) populations. J Genet Genomics 34: 984-993.
14. Liu H, Jiang Y, Wang S, Ninwichian P, Somridhivej B, Xu P, Abernathy J, Kucuktas H, Liu Z (2009) Comparative analysis of catfish BAC end sequences with the zebrafish genome. BMC Genomics 10: 592.
15. Mao RX, Liu FJ, Zhang XF, Zhang Y, Cao DC, Lu CY, Liang LQ, Sun XW (2009) Studies on quantitative trait loci related to activity of lactate dehydrogenase in common carp (Cyprinus carpio). Yi Chuan 31: 407-411.
16. Moens LN, Smolders R, van Der Ven K, van Remortel P, Del-Favero J, De Coen WM (2007a) Effluent impact assessment using microarray-based analysis in common carp: a systems toxicology approach. Chemosphere 67: 2293-2304.
17. Moens LN, van Der Ven K, van Remortel P, Del-Favero J, De Coen WM (2007b) Gene expression analysis of estrogenic compounds in the liver of common carp (Cyprinus carpio) using a custom cDNA microarray. J Biochem Mol Toxicol 21: 299-311.
18. Palti Y, Luo MC, Hu Y, Genet C, You FM, Vallejo RL, Thorgaard GH, Wheeler PA, Rexroad CE 3rd (2009) A first generation BAC-based physical map of the rainbow trout genome. BMC Genomics 10: 462.
19. Sambrook J (2001) Molecular cloning: a laboratory manual/Joseph Sambrook, David W. Russell, Cold Spring Harbor, N. Y.: Cold Spring Harbor Laboratory.
20. Shao CW, Chen SL, Scheuring CF, Xu JY, Sha ZX, Dong XL, Zhang HB (2010) Construction of two BAC libraries from half-smooth tongue sole Cynoglossus semilaevis and identification of clones containing candidate sex-determination genes. Mar Biotechnol (NY) 12(5): 558-568.
21. Sun X, Liang L (2004) A genetic linkage map of common carp (Cyprinus carpio L.) and mapping of a locus associated with cold tolerance. Aquaculture 238: 8.
22. Thorsen J, Zhu B, Frengen E, Osoegawa K, De Jong PJ, Koop BF, Davidson WS, Hoyheim B (2005) A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics 6: 50.
23. Tiersch TR, Chandler RW, Wachtel SS, Elias S (1989) Reference standards for flow cytometry and application in comparative studies of nuclear DNA content. Cytometry 10: 706-710.
24. Wang S, Xu P, Thorsen J, Zhu B, De Jong PJ, Waldbieser G, Kucuktas H, Liu Z (2007) Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes. Mar Biotechnol NY 9: 701-711.
25. Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, Wilson M, Liu H, Jiang Y, Lee Y, Chen F, Lu J, Wang W, Xu P, Somridhivej B, Baoprasertkul P, Quilang J, Sha Z, Bao B, Wang Y, Wang Q, Takano T, Nandi S, Liu S, Wong L, Kaltenboeck L, Quiniou S, Bengten E, Miller N, Trant J, Rokhsar D, Liu Z (2010) Assembly of 500, 000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biol 11: R8.
26. Williams DR, Li W, Hughes MA, Gonzalez SF, Vernon C, Vidal MC, Jeney Z, Jeney G, Dixon P, Mcandrew B, Bartfai R, Orban L, Trudeau V, Rogers J, Matthews L, Fraser EJ, Gracey AY, Cossins AR (2008) Genomic resources and microarrays for the common carp Cyprinus carpio L. J Fish Biol 72: 2095-2117.
27. Xu P, Wang S, Liu L, Peatman E, Somridhivej B, Thimmapuram J, Gong G, Liu Z (2006) Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species. Anim Genet 37: 321-326.
28. Xu P, Wang S, Liu L, Thorsen J, Kucuktas H, Liu Z (2007) A BAC-based physical map of the channel catfish genome. Genomics 90: 380-388.
29. Zhou J, Wu Q, Wang Z, Ye Y (2004) Genetic variation analysis within and among six varieties of common carp (Cyprinus carpio L.) in China using microsatellite markers. Russ J Genet 40: 1389-1393.
30. Zhang Y, Liang LQ, Chang YM, Hou N, Lu CY, Sun XW (2007) Mapping and genetic effect analysis of quantitative trait loci related to body size in common carp (Cyprinus carpio L.). Yi Chuan 29: 1243-1248.
31. Zhang Y, Liang L, Jiang P, Li D, Lu C, Sun X (2008a) Genome evolution trend of common carp (Cyprinus carpio L.) as revealed by the analysis of microsatellite loci in a gynogentic family. J Genet Genomics 35: 97-103.
32. Zhang Y, Zhang X, Scheuring CF, Zhang HB, Huan P, Li F, Xiang J (2008b) Construction and characterization of two bacterial artificial chromosome libraries of Zhikong scallop, Chlamys farreri Jones et Preston, and identification of BAC clones containing the genes involved in its innate immune system. Mar Biotechnol NY 10: 358-365.
33. Zhang X, Zhang Y, Scheuring C, Zhang HB, Huan P, Wang B, Liu C, Li F, Liu B, Xiang J (2010) Construction and characterization of a bacterial artificial chromosome (BAC) library of Pacific white shrimp, Litopenaeus vannamei. Mar Biotechnol NY 12: 141-149.