Genetic diversity of foot-and-mouth disease virus serotype O in Pakistan and Afghanistan, 1997-2009

Infection, Genetics and Evolution

Volumn 11, Issue 6, 2011, Pages 1229-1238

  Jamal, Syed M ^a,b,c   Ferrari, Giancarlo ^d   Ahmed, Safia ^b   Normann, Preben ^c   Belsham, Graham J ^c  

^a National Veterinary Laboratory   (Pakistan)

^b QUAID I AZAM UNIVERSITY   (Pakistan)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^d FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS   (Italy)

Author keywords

Evolution; FMD; Genetic characterization; Molecular epidemiology; Picornavirus; RNA sequence

Indexed keywords

PROTEIN VP1;

AFGHANISTAN; ARTICLE; BOVIDS; BUFFALO; CATTLE; CONTROLLED STUDY; FOOT AND MOUTH DISEASE VIRUS; GENETIC VARIABILITY; GENOME ANALYSIS; GEOGRAPHIC DISTRIBUTION; GEOGRAPHICAL VARIATION (SPECIES); MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PAKISTAN; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEROTYPE; VIRUS IDENTIFICATION;

AFGHANISTAN; ANIMALS; BUFFALOES; CAPSID PROTEINS; CATTLE; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; GENETIC VARIATION; GOATS; PAKISTAN; PHYLOGENY; PHYLOGEOGRAPHY; REGRESSION ANALYSIS; SEQUENCE ANALYSIS, DNA; SEROTYPING; SHEEP;

FOOT-AND-MOUTH DISEASE VIRUS; MIRIDAE; PICORNAVIRIDAE;

EID: 79960385413     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2011.03.006     Document Type: Article

References (41)

1. Alexandersen S., Mowat N. Foot-and-mouth disease: host range and pathogenesis. Curr. Top. Microbiol. Immunol. 2005, 288:9-42.
2. Bachrach H.L. Foot-and-mouth disease. Annu. Rev. Microbiol. 1968, 22:201-244.
3. Balinda S.N., Sangula A.K., Heller R., Muwanika V.B., Belsham G.J., Masembe C., Siegismund H.R. Diversity and transboundary mobility of serotype O foot-and-mouth disease virus in East Africa: implications for vaccination policies. Infect. Genet. Evol. 2010, 10:1058-1065.
4. Beck E., Strohmaier K. Subtyping of European foot-and-mouth disease virus strains by nucleotide sequence determination. J. Virol. 1987, 61(5):1621-1629.
5. Belsham G.J. Translation and replication of FMDV RNA. Curr. Top. Microbiol. Immunol. 2005, 288:43-70.
6. Belsham G.J., Jamal S.M., Tjørnehøj K., Bøtner A. Rescue of foot-and-mouth disease viruses that are pathogenic for cattle from preserved viral RNA samples. PLoS One 2011, 6(1):e14621. doi:10.1371/journal.pone.0014621.
7. Brückner G.K, Vosloo W., Du Plessis B.J., Kloeck P.E., Connoway L., Ekron M.D., Weaver D.B., Dickason C.J., Schreuder F.J., Marais T., Mogajane M.E. Foot and mouth disease: the experience of South Africa. Rev. Sci. Tech. 2002, 21(3):751-764.
8. Callahan J.D., Brown F., Osorio F.A., Sur J.H., Kramer E., Long G.W., Lubroth J., Ellis S.J., Shoulars K.S., Gaffney K.L., Rock D.L., Nelson W.M. Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J. Am. Vet. Med. Assoc. 2002, 220(11):1636-1642.
9. Domingo E., Escarmis C., Baranowski E., Ruiz-Jarabo C.M., Carrillo E., Núñez J.I., Sobrino F. Evolution of foot-and-mouth disease virus. Virus Res. 2003, 91(1):47-63.
10. Dopazo J., Sobrino F., Palma E.L., Domingo E., Moya A. Gene encoding capsid protein VP1 of foot-and-mouth disease virus: a quasispecies model of molecular evolution. Proc. Natl. Acad. Sci. U.S.A. 1988, 85:6811-6815.
11. EUFMD, 2007. Report of the 37th Session of the European Commission for the Control of Foot-and-Mouth Disease (EUFMD), held at Rome, Italy. 18-20 April 2007.
12. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
13. Fox G., Parry N.R., Barnett P.V., McGinn B., Rowlands D.J., Brown F. The cell attachment site on foot-and-mouth disease virus includes the amino acid sequence RGD (arginine-glycine-aspartic acid). J. Gen. Virol. 1989, 70:625-637.
14. Gebauer F., De La Torre J.C., Gomes I., Mateu M.G., Barahona H., Tiraboschi B., Bergmann I., de Mello P.A., Domingo E. Rapid selection of genetic and antigenic variants of foot-and-mouth disease virus during persistence in cattle. J. Virol. 1988, 62(6):2041-2049.
15. Hemadri D., Tosh C., Sanyal A., Venkataramanan R. Emergence of a new strain of type O foot-and-mouth disease virus: its phylogenetic and evolutionary relationship with the PanAsia pandemic strain. Virus Genes 2002, 25(1):23-34.
16. Jackson T., Sharma A., Ghazaleh R.A., Blakemore W.E., Ellard F.M., Simmons D.L., Newman J.W.I., Stuart D.I., King A.M.Q. Arginine-glycine-aspartic acid-specific binding by foot-and-mouth disease viruses to the purified integrin αvβ3 in vitro. J. Virol. 1997, 71(11):8357-8361.
17. Jamal S.M., Ahmed S., Hussain M., Ali Q. Status of foot-and-mouth disease in Pakistan. Arch. Virol. 2010, 155:1487-1491.
18. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
19. Klein J., Hussain M., Ahmad M., Normann P., Afzal M., Alexandersen S. Genetic characterization of the recent foot-and-mouth disease virus subtype A/IRN/2005. Virol. J. 2007, 4:122. doi:10.1186/1743-422X-4-122.
20. Klein J., Hussain M., Ahmad M., Afzal M., Alexandersen S. Epidemiology of foot-and-mouth disease in Landhi dairy colony, Pakistan, the world largest Buffalo colony. Virol. J. 2008, 5:53. doi:10.1186/1743-422X-5-53.
21. Knowles J., Samuel A.R., Davies P.R., Kitching P., Donaldson A.I. Outbreak of foot-and-mouth disease virus serotype O in the UK caused by a pandemic strain. Vet. Rec. 2001, 148:258-259.
22. Knowles N.J., Samuel A.R., Davies P.R., Midgley R.J., Valarcher J.-F. Pandemic strain of foot-and-mouth disease virus serotype O. Emerg. Infect. Dis. 2005, 11(12):1887-1893.
23. Knowles N.J., Samuel A.R. Molecular epidemiology of foot-and-mouth disease virus. Virus Res. 2003, 91(1):65-80.
24. Martinez M.A., Dopazo J., Hernandez J., Mateu M.G., Sobrino F., Domingo E., Knowles N.J. Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decades. J. Virol. 1992, 66(6):3557-3565.
25. Nagendrakumar S.B., Madhanmohan M., Rangarajan P.N., Srinivasan V.A. Genetic analysis of foot-and-mouth disease virus serotype A of Indian origin and detection of positive selection and recombination in leader protease-and capsid-coding regions. J. Biosci. 2009, 34(1):85-101.
26. Reid S.M., Grierson S.S., Ferris N.P., Hutchings G.H., Alexandersen S. Evaluation of automated RT-PCR to accelerate the laboratory diagnosis of foot-and-mouth disease virus. J. Virol. Methods 2003, 107(2):129-139.
27. Rweyemamu M., Roeder P., Mackay D., Sumption K., Brownlie J., Leforban Y., Valarcher J.-F., Knowles N.J., Saraiva V. Epidemiological patterns of foot-and-mouth disease worldwide. Transbound. Emerg. Dis. 2008, 55:57-72.
28. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
29. Sakamoto K., Kanno T., Yamakawa M., Yoshida K., Yamazoe R., Murakami Y. Isolation of foot-and-mouth disease virus from Japanese black cattle in Miyazaki Prefecture, Japan, 2000. J. Vet. Med. Sci. 2002, 64(1):91-94.
30. Samuel A.R., Knowles N.J. Foot-and-mouth disease type O viruses exhibit genetically and geographically distinct evolutionary lineages (topotypes). J. Gen. Virol. 2001, 82(Pt 3):609-621.
31. Scherbakov, A., Timina, A., Borisov, V., 2008. Phylogenetic study of FMDV isolates collected in Russia, CIS-countries and Mongolia in 2000-2007. Appendix 9. The global control of FMD - tools, ideas and ideals. Erice, Italy. 14-17 October, 2008. Open session of the Research Group of the Standing Technical Committee on FMD. European Commission for the control of FMD, Food and Agriculture Organization of the United Nations. Rome, Italy, pp. 69-72.
32. Schumann K.R., Knowles N.J., Davies P.R., Midgley R.J., Valarcher J.F., Raoufi A.Q., McKenna T.S., Hurtle W., Burans J.P., Martin B.M., Rodriguez L.L., Beckham T.R. Genetic characterization and molecular epidemiology of foot-and-mouth disease viruses isolated from Afghanistan in 2003-2005. Virus Genes 2008, 36(2):401-413.
33. Shin J.H., Sohn H.J., Choi K.S., Kwon B.J., Choi C.U., Kim J.H., Hwang E.K., Park J.H., Kim J.Y., Choi S.H., Kim O.K. Identification and isolation of foot-and-mouth disease virus from primary suspect cases in Korea in 2000. J. Vet. Med. Sci. 2003, 65(1):1-7.
34. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
35. Tosh C., Sanyal A., Hemadri D., Venkataramanan R. Phylogenetic analysis of serotype A foot-and-mouth disease virus isolated in India between 1977 and 2000. Arch. Virol. 2002, 147(3):493-513.
36. Tsutsui, T., Yamamoto, T., 2010. The foot-and-mouth disease epidemic in Japan, 2010. New tools and challenges for progressive control of FMD. Vienna, Austria. 27 September to 1 October, 2010. Open Session of the Research Group of the Standing Technical Committee on FMD. European Commission for the control of FMD, Food and Agriculture Organization of the United Nations, Rome, Italy, p. 3.
37. Villaverde A., Martinez M.A., Sobrino F., Dopazo J., Moya A., Domingo E. Fixation of mutations at the VP1 gene of foot-and-mouth disease virus, Can quasispecies define a transient molecular clock?. Genes 1991, 103:147-153.
38. Waheed U., Parida S., Khan Q.M., Hussain H., Ebert K., Wadsworth J., Reid S.M., Hutchings G.H., Mahapatra M., King D.P., Paton D.J., Knowles N.J. Molecular characterisation of foot-and-mouth disease viruses from Pakistan, 2005-2008. Transbound. Emerg. Dis. 2010, doi:10.1111/j.1865-1682.2010.01186.x.
39. WRL-FMD, 2008. Report on FMDV O from Pakistan in 2007-2008. IAH-P-EP-MEG-FOR-005-1. August 4 2008. World Reference laboratory for FMD, Institute for Animal Health, Pirbirght, UK, pp. 1-8.
40. WRL-FMD, 2010. Genotyping Report. FMDV type O (Iran). Batch: WRLFMD/2010/00011. 20 April, 2010, pp. 1-37.
41. Zulfiqar, M., 2005. Report for development of a national control policy for foot-and-mouth disease in Pakistan. FAO project, Support emergency for prevention and control of main transboundary diseases in Pakistan (Rinderpest, FMD, PPR), p. 16.