Molecular Characterisation of Foot-and-Mouth Disease Viruses from Pakistan, 2005-2008

Transboundary and Emerging Diseases

Volumn 58, Issue 2, 2011, Pages 166-172

  Waheed, U ^a,b,d   Parida, S ^b   Khan, Q M ^a   Hussain, M ^c   Ebert, K ^b   Wadsworth, J ^b   Reid, S M ^b,e   Hutchings, G H ^b   Mahapatra, M ^b   King, D P ^b   Paton, D J ^b   Knowles, N J ^b  

^a NATIONAL INSTITUTE FOR BIOTECHNOLOGY AND GENETIC ENGINEERING NIBGE   (Pakistan)

^b INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

^c Food and Agriculture Organization (FAO)   (Pakistan)

^d UNIVERSITY OF VETERINARY AND ANIMAL SCIENCES   (Pakistan)

^e VETERINARY LABORATORIES AGENCY   (United Kingdom)

Author keywords

Epidemiology; Foot and mouth disease; Molecular; Phylogenetic

Indexed keywords

ANIMALIA; FOOT-AND-MOUTH DISEASE VIRUS;

CAPSID PROTEIN; VP1 PROTEIN, FOOT-AND-MOUTH DISEASE VIRUS;

ANIMAL; BOVINE; BUFFALO; CATTLE DISEASES; CLASSIFICATION; DNA SEQUENCE; FOOT AND MOUTH DISEASE VIRUS; FOOT-AND-MOUTH DISEASE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PAKISTAN; PHYLOGENY; VETERINARY; VIROLOGY;

ANIMALS; BUFFALOES; CAPSID PROTEINS; CATTLE; CATTLE DISEASES; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; MOLECULAR SEQUENCE DATA; PAKISTAN; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 79952472312     PISSN: 18651674     EISSN: 18651682     Source Type: Journal    
DOI: 10.1111/j.1865-1682.2010.01186.x     Document Type: Article

References (24)

1. Anjum, R., M. Hussain, A.B. Zahoor, H. Irshad, and U. Farooq, 2006: Epidemiological analyses of foot and mouth disease in Pakistan. Int. J. Agric. Biol. 8, 648-651.
2. Callahan, J.D., F. Brown, F.A. Osorio, J.H. Sur, E. Kramer, G.W. Long, J. Lubroth, S.J. Ellis, K.S. Shoulars, K.L. Gaffney, D.L. Rock, and W.M. Nelson, 2002: Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J. Am. Vet. Med. Assoc. 220, 1636-1642.
3. De Castro, M.P., 1964: Behaviour of the foot-and-mouth disease virus in cell cultures: susceptibility of the IB-RS-2 cell line. Arch. Inst. Biol. São Paulo 31, 63-78.
4. Felsenstein, J., 1985: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Ferris, N.P., and M. Dawson, 1988: Routine application of enzyme-linked immunosorbent assay in comparison with complement fixation for the diagnosis of foot-and-mouth and swine vesicular diseases. Vet. Microbiol. 16, 201-209.
6. Hemadri, D., C. Tosh, A. Sanyal, and R. Venkataramanan, 2002: Emergence of a new strain of type O foot-and-mouth disease virus: its phylogenetic and evolutionary relationship with the PanAsia pandemic strain. Virus Genes 25, 23-34.
7. Hussain Naqvi, S.N., and S. Shaheen, 2008: Agriculture. Pakistan Economic Survey 2007-2008. Ministry of Finance, Govt. of Pakistan, Islamabad.
8. Hussain, M., H. Irshad, and M.Q. Khan, 2008: Laboratory diagnosis of transboundary animal diseases in Pakistan. Transbound. Emerg. Dis. 55, 190-195.
9. Klein, J., M. Hussain, M. Ahmad, P. Normann, M. Afzal, and S. Alexandersen, 2007: Genetic characterisation of the recent foot-and-mouth disease virus subtype A/IRN/2005. Virol. J. 4, 122.
10. Klein, J., M. Hussain, M. Ahmad, M. Afzal, and S. Alexandersen, 2008: Epidemiology of foot-and-mouth disease in Landhi Dairy Colony, Pakistan, the world largest Buffalo colony. Virol. J. 5, 53.
11. Knowles, N.J., and A.R. Samuel, 2003: Molecular epidemiology of foot-and-mouth disease virus. Virus Res. 91, 65-80.
12. Knowles, N.J., A.R. Samuel, P.R. Davies, R.J. Midgley, and J.-F. Valarcher, 2005: Pandemic strain of foot-and-mouth disease virus serotype O. Emerg. Infect. Dis. 11, 1887-1893.
13. Knowles, N.J., M.H. Nazem Shirazi, J. Wadsworth, K.G. Swabey, J.M. Stirling, R.J. Statham, Y. Li, G.H. Hutchings, N.P. Ferris, Ü. Parlak, F. Özyörük, K.J. Sumption, D.P. King, and D.J. Paton, 2009: Recent spread of a new strain (A-Iran-05) of foot-and-mouth disease virus type A in the Middle East. Transbound. Emerg. Dis. 56, 157-169.
14. Lewis-Rogers, N., D.A. McClellan, and K.A. Crandall, 2008: The evolution of foot-and-mouth disease virus: impacts of recombination and selection. Infect. Genet. Evol. 8, 786-798.
15. Mohapatra, J.K., A. Sanyal, D. Hemadri, C. Tosh, S. Biswas, N.J. Knowles, T.J. Rasool, S.K. Bandyopadhyay, and B. Pattnaik, 2008: Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136, 16-29.
16. Nagendrakumar, S.B., G.S. Reddy, D. Chandran, D. Thiagarajan, P.N. Rangarajan, and V.A. Srinivasan, 2005: Molecular characterization of foot-and-mouth disease virus type C of Indian origin. J. Clin. Microbiol. 43, 966-969.
17. Rana, S.K., and T. Bagchi, 2008: Partial sequence analysis of VP1 of Indian isolates of foot-and-mouth disease virus type Asia-1. Virus Genes 37, 60-68.
18. Schumann, K.R., N.J. Knowles, P.R. Davies, R.J. Midgley, J.-F. Valarcher, A.Q. Raoufi, T.S. McKenna, W. Hurtle, J.P. Burans, B.M. Martin, L.L. Rodriguez, and T.R. Beckham, 2008: Genetic characterization and molecular epidemiology of foot-and-mouth disease viruses isolated from Afghanistan in 2003-2005. Virus Genes 36, 401-413.
19. Shaw, A.E., S.M. Reid, K. Ebert, G.H. Hutchings, N.P. Ferris, and D.P. King, 2007: Implementation of one step real-time RT-PCR protocol for diagnosis of foot-and-mouth disease. J. Virol. Methods 143, 81-85.
20. Tamura, K., J. Dudley, M. Nei, and S. Kumar, 2007: MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599.
21. Tosh, C., A. Sanyal, D. Hemadri, and R. Venkataramanan, 2002: Phylogenetic analysis of serotype A foot-and-mouth disease virus isolated in India between 1977 and 2000. Arch. Virol. 147, 493-513.
22. Valarcher, J.-F., N.J. Knowles, V. Zakharov, A. Scherbakov, Z. Zhang, Y.-J. Shang, Z.-X. Liu, X.-T. Liu, A. Sanyal, D. Hemadri, C. Tosh, T.J. Rasool, B. Pattnaik, K.R. Schumann, T.R. Beckham, W. Linchongsubongkoch, N.P. Ferris, P.L. Roeder, and D.J. Paton, 2009: Multiple origins of foot-and-mouth disease virus serotype Asia 1 outbreaks, 2003-2007. Emerg. Infect. Dis. 15, 1046-1051.
23. Zahur, A.B., H. Irshad, M. Hussain, R. Anjum, and M.Q. Khan, 2006: Transboundary animal diseases in Pakistan. J. Vet. Med. B Infect. Dis. Vet. Public Health 53(Suppl. 1), 19-22.
24. Zulfiqar, M., 2003: Draft Report for Development of National Disease Control Policy for Foot and Mouth Disease in Pakistan under the FAO Project "Support for Emergency Prevention and Control of Main Trans-boundary Animal Diseases in Pakistan, Rinderpest, FMD, PPR".