SigMate: A comprehensive software package for extracellular neuronal signal processing and analysis

2011 5th International IEEE/EMBS Conference on Neural Engineering, NER 2011

Volumn , Issue , 2011, Pages 88-91

  Mahmud, Mufti ^a   Bertoldo, Alessandra ^a   Girardi, Stefano ^a   Maschietto, Marta ^a   Pasqualotto, Elisabetta ^a   Vassanelli, Stefano ^a  

^a UNIVERSITY OF PADOVA   (Italy)

Author keywords

local field potentials; neuronal activity; Neuronal signal analysis; Neuronal signal processing; signal analysis software

Indexed keywords

ARTIFACT REMOVAL; BASELINE CORRECTION; BRAIN-MACHINE INTERFACING; CORTICAL LAYERS; CURRENT SOURCE DENSITY; CUSTOM TOOLS; EXTRACELLULAR; LATENCY ESTIMATION; LOCAL FIELD POTENTIALS; MULTI-SITE; NEURAL PROBES; NEURONAL ACTIVITIES; NEURONAL SIGNAL ANALYSIS; NEURONAL SIGNAL PROCESSING; NOISE CHARACTERIZATION; PROCESSING TOOLS; SIMULATION ENVIRONMENT; SPIKE DETECTION; SPIKE-SORTING; STANDARD TOOLS;

BRAIN; DATA VISUALIZATION; FIELD EFFECT TRANSISTORS; MATLAB; SIGNAL ANALYSIS; SORTING; VISUALIZATION;

ACTIVATION ANALYSIS;

EID: 79960381429     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/NER.2011.5910495     Document Type: Conference Paper

References (14)

1. G. Buzsaki, "Large-scale recording of neuronal ensembles", Nat. Neurosci., Vol. 7, No. 5, pp. 446-451, May 2004.
2. K. D. Wise, D. J. Anderson, J. F. Hetke, D. R. Kipke, K. Najafi, "Wireless Implantable Microsystems: High-Density Electronic Interfaces to the Nervous System", Proc. of the IEEE, Vol. 92, No. 1, pp. 76-97, Jan 2004.
3. R. Q. Quiroga, Z. Nadasdy, Y. Ben-Shaul, "Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering", Neural Computation, Vol. 16, pp. 1661-1687, 2004.
4. K. Y. Kwon, S. Eldawlatly, K. G. Oweiss, "NeuroQuest: a comprehensive tool for large scale neural data processing and analysis", in Proc. of the 4th Intl. IEEE EMBS Conf. on Neural Eng., Antalya, Turkey, April 29-May 2, 2009, pp. 622-625.
5. L. Hazan, M. Zugaro, G. Buzsaki, "Klusters, NeuroScope, NDManager: A free software suite for neurophysiological data processing and visualization", J. Neurosci. Meth., Vol. 155, pp. 207-216, 2006.
6. M. Lidierth, "sigTOOL: A MATLAB-based environment for sharing laboratory-developed software to analyze biological signals", J. Neurosci. Meth., Vol. 178, pp. 188-196, 2009.
7. M. Mahmud, S. Girardi, M. Maschietto, M. M. Rahman, A. Bertoldo, S. Vassanelli, "Slow Stimulus Artifact Removal through Peak-Valley Detection of Neuronal Signals Recorded from Somatosensory Cortex by High Resolution Brain-Chip Interface", in IFMBE Proceedings - WC 2009, Munich, September 2009, vol. 25, pp. 2062-2065.
8. M. Mahmud, S. Girardi, M. Maschietto, M. M. Rahman, A. Bertoldo, S. Vassanelli, "Noise Characterization of Electrophysiological Signals Recorded from High Resolution Brain-Chip Interface", in Proc. of the ISBB 2009, Melbourne, December 2009, pp. 84-87.
9. M. Mahmud, M. Maschietto, S. Girardi, A. Bertoldo, S. Vassanelli, "Automatic Detection of Layer Activation Order in Information Processing Pathways of Rat Barrel Cortex under Mechanical Whisker Stimulation", in Proc of EMBC 2010, Sept. 2010, pp. 6095-6098.
10. K. H. Pettersen, A. Devor, I. Ulbert, G. T. Einevoll, "Current-source density estimation based on inversion of electrostatic forward solution: Effects of finite extent of neuronal activity and conductivity discontinuities", J Neurosci Methods, Vol. 154, pp. 116-133, 2006.
11. M. Mahmud, E. Pasqualotto, A. Bertoldo, S. Girardi, M. Maschietto, S. Vassanelli, "An automated method for detection of layer activation order in information processing pathway of rat barrel cortex under mechanical whisker stimulation", J Neurosci Methods, (in press).
12. M. Mahmud, D. Travalin, A. Bertoldo, S. Girardi, M. Maschietto, S. Vassanelli, "A Contour Based Automatic Method to Classify Local Field Potentials Recorded from Rat Barrel Cortex", in 5th Cairo Intl Conf on Biomed Eng, Cairo, Egypt, December 2010, (Accepted).
13. M. Mahmud, D. Hawellek, A. Bertoldo, "EEG Based Brain-Machine Interface for Navigation of Robotic Device", in Proc 3rd IEEE/RAS-EMBS BioRob 2010, Tokyo, September 2010, pp. 168-172.
14. M. Maschietto, M. Mahmud, S. Girardi, S. Vassanelli, "A High Resolution Bi-Directional Communication through a Brain-Chip Interface", in Proc AT-EQUAL, Romania, July 2009, pp. 32-35.