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Volumn 61, Issue 7, 2011, Pages 1638-1644

Phylogenetic analysis of the genera Proteus, Morganella and Providencia by comparison of rpoB gene sequences of type and clinical strains suggests the reclassification of proteus myxofaciens in a new genus, Cosenzaea gen. nov., as Cosenzaea myxofaciens comb. nov

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; RNA 16S; RNA POLYMERASE BETA SUBUNIT; BACTERIAL DNA; DNA DIRECTED RNA POLYMERASE;

EID: 79960186244     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.021964-0     Document Type: Article
Times cited : (40)

References (40)
  • 1
    • 0346218268 scopus 로고    scopus 로고
    • Rpob-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria
    • Adékambi, T., Colson, P. & Drancourt, M. (2003). rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria. J Clin Microbiol 41, 5699-5708.
    • (2003) J Clin Microbiol , vol.41 , pp. 5699-5708
    • Adékambi, T.1    Colson, P.2    Drancourt, M.3
  • 2
    • 58149305793 scopus 로고    scopus 로고
    • The rpoB gene as a tool for clinical microbiologists
    • Adé kambi, T., Drancourt, M. & Raoult, D. (2009). The rpoB gene as a tool for clinical microbiologists. Trends Microbiol 17, 37-45.
    • (2009) Trends Microbiol , vol.17 , pp. 37-45
    • Adékambi, T.1    Drancourt, M.2    Raoult, D.3
  • 3
    • 0012979571 scopus 로고
    • Additional genera of the Enterobacteriaceae
    • Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer
    • Brenner, D. J. (1992). Additional genera of the Enterobacteriaceae. In The Prokaryotes, pp. 2922-2937. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
    • (1992) The Prokaryotes , pp. 2922-2937
    • Brenner, D.J.1
  • 6
    • 0015234820 scopus 로고
    • Proteus mirabilis infections in a hospital nursery traced to a human carrier
    • Burke, J. P., Ingall, D., Klein, J. O., Gezon, H. M. & Finland, M. (1971). Proteus mirabilis infections in a hospital nursery traced to a human carrier. N Engl J Med 284, 115-121.
    • (1971) N Engl J Med , vol.284 , pp. 115-121
    • Burke, J.P.1    Ingall, D.2    Klein, J.O.3    Gezon, H.M.4    Finland, M.5
  • 7
    • 62349141945 scopus 로고    scopus 로고
    • 16S-23S rDNA internal transcribed spacer regions in four Proteus species
    • Cao, B., Wang, M., Liu, L., Zhou, Z., Wen, S., Rozalski, A. & Wang, L. (2009). 16S-23S rDNA internal transcribed spacer regions in four Proteus species. J Microbiol Methods 77, 109-118.
    • (2009) J Microbiol Methods , vol.77 , pp. 109-118
    • Cao, B.1    Wang, M.2    Liu, L.3    Zhou, Z.4    Wen, S.5    Rozalski, A.6    Wang, L.7
  • 8
    • 0030024243 scopus 로고    scopus 로고
    • Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
    • Cilia, V., Lafay, B. & Christen, R. (1996). Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol Biol Evol 13, 451-461.
    • (1996) Mol Biol Evol , vol.13 , pp. 451-461
    • Cilia, V.1    Lafay, B.2    Christen, R.3
  • 9
    • 0013868599 scopus 로고
    • A new species of Proteus isolated from larvae of the gypsy moth Porthetria dispar (L.)
    • Cosenza, B. J. & Podgwaite, J. D. (1966). A new species of Proteus isolated from larvae of the gypsy moth Porthetria dispar (L.). Antonie van Leeuwenhoek 32, 187-191.
    • (1966) Antonie Van Leeuwenhoek , vol.32 , pp. 187-191
    • Cosenza, B.J.1    Podgwaite, J.D.2
  • 10
    • 0032514632 scopus 로고    scopus 로고
    • Detection of 400-year-old Yersinia pestis DNA in human dental pulp: An approach to the diagnosis of ancient septicemia
    • Drancourt, M., Aboudharam, G., Signoli, M., Dutour, O. & Raoult, D. (1998). Detection of 400-year-old Yersinia pestis DNA in human dental pulp: an approach to the diagnosis of ancient septicemia. Proc Natl Acad Sci U S A 95, 12637-12640.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 12637-12640
    • Drancourt, M.1    Aboudharam, G.2    Signoli, M.3    Dutour, O.4    Raoult, D.5
  • 11
    • 0007649544 scopus 로고
    • Biochemical characterization of Providencia
    • Ewing, W. H., Davis, B. R. & Sikes, J. V. (1972). Biochemical characterization of Providencia. Public Health Lab 30, 25-38.
    • (1972) Public Health Lab , vol.30 , pp. 25-38
    • Ewing, W.H.1    Davis, B.R.2    Sikes, J.V.3
  • 12
    • 79960155643 scopus 로고    scopus 로고
    • PHYLIP (phylogeny inference package) version 3.66. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2006). PHYLIP (phylogeny inference package) version 3.66. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (2006)
    • Felsenstein, J.1
  • 13
    • 0036701963 scopus 로고    scopus 로고
    • Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence
    • Fukushima, M., Kakinuma, K. & Kawaguchi, R. (2002). Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J Clin Microbiol 40, 2779-2785.
    • (2002) J Clin Microbiol , vol.40 , pp. 2779-2785
    • Fukushima, M.1    Kakinuma, K.2    Kawaguchi, R.3
  • 14
    • 0019940972 scopus 로고
    • Identification of Proteus penneri sp. nov., formerly known as Proteus vulgaris indole negative or as Proteus vulgaris biogroup 1
    • Hickman, F. W., Steigerwalt, A. G., Farmer, J. J., III & Brenner, D. J. (1982). Identification of Proteus penneri sp. nov., formerly known as Proteus vulgaris indole negative or as Proteus vulgaris biogroup 1. J Clin Microbiol 15, 1097-1102.
    • (1982) J Clin Microbiol , vol.15 , pp. 1097-1102
    • Hickman, F.W.1    Steigerwalt, A.G.2    Farmer III., J.J.3    Brenner, D.J.4
  • 15
    • 0020620314 scopus 로고
    • Providencia rustigianii: A new species in the family Enterobacteriaceae formerly known as Providencia alcalifaciens biogroup 3
    • Hickman-Brenner, F. W., Farmer, J. J., III, Steigerwalt, A. G. & Brenner, D. J. (1983). Providencia rustigianii: a new species in the family Enterobacteriaceae formerly known as Providencia alcalifaciens biogroup 3. J Clin Microbiol 17, 1057-1060.
    • (1983) J Clin Microbiol , vol.17 , pp. 1057-1060
    • Hickman-Brenner, F.W.1    Farmer III., J.J.2    Steigerwalt, A.G.3    Brenner, D.J.4
  • 16
    • 0019639160 scopus 로고
    • Inversions between ribosomal RNA genes of Escherichia coli
    • Hill, C. W. & Harnish, B. W. (1981). Inversions between ribosomal RNA genes of Escherichia coli. Proc Natl Acad Sci U S A 78, 7069-7072.
    • (1981) Proc Natl Acad Sci U S A , vol.78 , pp. 7069-7072
    • Hill, C.W.1    Harnish, B.W.2
  • 17
    • 0141816837 scopus 로고    scopus 로고
    • Population genetics of the nomenspecies Enterobacter cloacae
    • Hoffmann, H. & Roggenkamp, A. (2003). Population genetics of the nomenspecies Enterobacter cloacae. Appl Environ Microbiol 69, 5306-5318.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5306-5318
    • Hoffmann, H.1    Roggenkamp, A.2
  • 18
    • 33746703658 scopus 로고    scopus 로고
    • Hospital acquired urinary tract infections in urology departments: Pathogens, susceptibility and use of antibiotics. Data from the PEP and PEAP-studies
    • PEP and PEAP-study investigators & Board of the European Society of Infections in Urology
    • Johansen, T. E., Cek, M., Naber, K. G., Stratchounski, L., Svendsen, M. V., Tenke, P., PEP and PEAP-study investigators & Board of the European Society of Infections in Urology (2006). Hospital acquired urinary tract infections in urology departments: pathogens, susceptibility and use of antibiotics. Data from the PEP and PEAP-studies. Int J Antimicrob Agents 28 (Suppl 1), S91-S107.
    • (2006) Int J Antimicrob Agents , vol.28 , Issue.SUPPL. 1
    • Johansen, T.E.1    Cek, M.2    Naber, K.G.3    Stratchounski, L.4    Svendsen, M.V.5    Tenke, P.6
  • 19
    • 67649785282 scopus 로고    scopus 로고
    • Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogaster
    • Juneja, P. & Lazzaro, B. P. (2009). Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogaster. Int J Syst Evol Microbiol 59, 1108-1111.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1108-1111
    • Juneja, P.1    Lazzaro, B.P.2
  • 20
    • 0242405650 scopus 로고    scopus 로고
    • Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences
    • Khamis, A., Colson, P., Raoult, D. & Scola, B. L. (2003). Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences. Appl Environ Microbiol 69, 6740-6749.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6740-6749
    • Khamis, A.1    Colson, P.2    Raoult, D.3    Scola, B.L.4
  • 21
    • 0037244218 scopus 로고    scopus 로고
    • Bacteraemia due to tribe Proteeae: A review of 132 cases during a decade (1991-2000)
    • Kim, B. N., Kim, N. J., Kim, M. N., Kim, Y. S., Woo, J. H. & Ryu, J. (2003). Bacteraemia due to tribe Proteeae: a review of 132 cases during a decade (1991-2000). Scand J Infect Dis 35, 98-103.
    • (2003) Scand J Infect Dis , vol.35 , pp. 98-103
    • Kim, B.N.1    Kim, N.J.2    Kim, M.N.3    Kim, Y.S.4    Woo, J.H.5    Ryu, J.6
  • 22
    • 0023118782 scopus 로고
    • Expanded clinical spectrum of infections caused by Proteus penneri
    • Krajden, S., Fuksa, M., Petrea, C., Crisp, L. J. & Penner, J. L. (1987). Expanded clinical spectrum of infections caused by Proteus penneri. J Clin Microbiol 25, 578-579.
    • (1987) J Clin Microbiol , vol.25 , pp. 578-579
    • Krajden, S.1    Fuksa, M.2    Petrea, C.3    Crisp, L.J.4    Penner, J.L.5
  • 23
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 24
    • 0035922211 scopus 로고    scopus 로고
    • Application of nucleotide sequence of RNA polymerase b-subunit gene (rpoB) to molecular differentiation of serovars of Salmonella enterica subsp. enterica
    • Kwon, H. J., Park, K. Y., Kim, S. J. & Yoo, H. S. (2001). Application of nucleotide sequence of RNA polymerase b-subunit gene (rpoB) to molecular differentiation of serovars of Salmonella enterica subsp. enterica. Vet Microbiol 82, 121-129.
    • (2001) Vet Microbiol , vol.82 , pp. 121-129
    • Kwon, H.J.1    Park, K.Y.2    Kim, S.J.3    Yoo, H.S.4
  • 25
    • 0142043802 scopus 로고    scopus 로고
    • Genesequence-based criteria for species definition in bacteriology: The Bartonella paradigm
    • La Scola, B., Zeaiter, Z., Khamis, A. & Raoult, D. (2003). Genesequence-based criteria for species definition in bacteriology: the Bartonella paradigm. Trends Microbiol 11, 318-321.
    • (2003) Trends Microbiol , vol.11 , pp. 318-321
    • la Scola, B.1    Zeaiter, Z.2    Khamis, A.3    Raoult, D.4
  • 27
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bact 39, 159-167.
    • (1989) Int J Syst Bact , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.3
  • 28
    • 0030669211 scopus 로고    scopus 로고
    • Rpob sequence analysis as a novel basis for bacterial identification
    • Mollet, C., Drancourt, M. & Raoult, D. (1997). Rpob sequence analysis as a novel basis for bacterial identification. Mol Microbiol 26, 1005-1011.
    • (1997) Mol Microbiol , vol.26 , pp. 1005-1011
    • Mollet, C.1    Drancourt, M.2    Raoult, D.3
  • 29
    • 0033786377 scopus 로고    scopus 로고
    • Classification, identification, and clinical significance of Proteus, Providencia, and Morganella
    • O'Hara, C. M., Brenner, F. W. & Miller, J. M. (2000a). Classification, identification, and clinical significance of Proteus, Providencia, and Morganella. Clin Microbiol Rev 13, 534-546.
    • (2000) Clin Microbiol Rev , vol.13 , pp. 534-546
    • O'Hara, C.M.1    Brenner, F.W.2    Miller, J.M.3
  • 31
    • 0001979638 scopus 로고
    • The genera Proteus, Providencia and Morganella
    • Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer
    • Penner, J. L. (1992). The genera Proteus, Providencia and Morganella. In The Prokaryotes, pp. 2849-2862. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
    • (1992) The Prokaryotes , pp. 2849-2862
    • Penner, J.L.1
  • 32
    • 79960200002 scopus 로고    scopus 로고
    • Genus XXIX. Proteus Hauser 1885, 12AL
    • 2nd edn, Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer
    • Penner, J. L. (2005a). Genus XXIX. Proteus Hauser 1885, 12AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2B, pp. 745-753. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 B , pp. 745-753
    • Penner, J.L.1
  • 33
    • 84871561449 scopus 로고    scopus 로고
    • Genus XXX. Providencia Ewing 1962, 96AL
    • 2nd edn, Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer
    • Penner, J. L. (2005b). Genus XXX. Providencia Ewing 1962, 96AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2B, pp. 753-759. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 B , pp. 753-759
    • Penner, J.L.1
  • 35
    • 0032804195 scopus 로고    scopus 로고
    • Molecular characterization of the genera Proteus, Morganella, and Providencia by ribotyping
    • Pignato, S., Giammanco, G. M., Grimont, F., Grimont, P. A. & Giammanco, G. (1999). Molecular characterization of the genera Proteus, Morganella, and Providencia by ribotyping. J Clin Microbiol 37, 2840-2847.
    • (1999) J Clin Microbiol , vol.37 , pp. 2840-2847
    • Pignato, S.1    Giammanco, G.M.2    Grimont, F.3    Grimont, P.A.4    Giammanco, G.5
  • 37
    • 0032748472 scopus 로고    scopus 로고
    • The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae
    • Spröer, C., Mendrock, U., Swiderski, J., Lang, E. & Stackebrandt, E. (1999). The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae. Int J Syst Bacteriol 49, 1433-1438.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1433-1438
    • Spröer, C.1    Mendrock, U.2    Swiderski, J.3    Lang, E.4    Stackebrandt, E.5
  • 38
    • 71649089141 scopus 로고    scopus 로고
    • Development and evaluation of rpoB based PCR systems to differentiate the six proposed species within the genus Cronobacter
    • Stoop, B., Lehner, A., Iversen, C., Fanning, S. & Stephan, R. (2009). Development and evaluation of rpoB based PCR systems to differentiate the six proposed species within the genus Cronobacter. Int J Food Microbiol 136, 165-168.
    • (2009) Int J Food Microbiol , vol.136 , pp. 165-168
    • Stoop, B.1    Lehner, A.2    Iversen, C.3    Fanning, S.4    Stephan, R.5
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C. R., Kandler, O. & Wheelis, M. L. (1990). Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A 87, 4576-4579.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3


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