Population genetics of the nomenspecies Enterobacter cloacae

Applied and Environmental Microbiology

Volumn 69, Issue 9, 2003, Pages 5306-5318

  Hoffmann, Harald ^a   Roggenkamp, Andreas ^a  

^a LUDWIG MAXIMILIANS UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES; GENETIC ENGINEERING;

GENETIC CLUSTERS;

MICROBIOLOGY;

BACTERIAL DNA; BETA LACTAMASE; GENE PRODUCT; HEAT SHOCK PROTEIN 60;

BACTERIUM; PHYLOGENETICS; POPULATION GENETICS;

AMPC GENE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; ENTEROBACTER; ENTEROBACTER ASBURIAE; ENTEROBACTER CANCEROGENUS; ENTEROBACTER CLOACAE; ENTEROBACTER DISSOLVENS; ENTEROBACTER HORMAECHEI; ENTEROBACTER KOBEI; ENTEROBACTER NIMIPRESSURALIS; EPIDEMIOLOGICAL DATA; EVOLUTION; GENE CLUSTER; GENE SEQUENCE; GENETIC HETEROGENEITY; GENUS; HEMB GENE; HOUSEKEEPING GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION GENETICS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RPOB GENE; TAXONOMIC IDENTIFICATION; UNINDEXED SEQUENCE;

ANTI-BACTERIAL AGENTS; BASE SEQUENCE; CHAPERONIN 60; DNA PRIMERS; DNA, BACTERIAL; ENTEROBACTER CLOACAE; HUMANS; MICROBIAL SENSITIVITY TESTS; MULTIGENE FAMILY; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

BACTERIA (MICROORGANISMS); ENTEROBACTER; ENTEROBACTER ASBURIAE; ENTEROBACTER CANCEROGENUS; ENTEROBACTER CLOACAE; ENTEROBACTER DISSOLVENS; ENTEROBACTER HORMAECHEI; ENTEROBACTER KOBEI; ENTEROBACTER NIMIPRESSURALIS; NEGIBACTERIA;

EID: 0141816837     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.9.5306-5318.2003     Document Type: Article

References (47)

1. Abbott, S. L., and J. M. Janda. 1997. Enterobacter cancerogenus (Enterobacter taylorae) infections associated with severe trauma or crush injuries. Am. J. Clin. Pathol. 107:359-361.
2. Araujo, W. L., J. Marcon, W. Maccheroni, Jr., J. D. Van Elsas, J. W. Van Vuurde, and J. L. Azevedo. 2002. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68:4906-4914.
3. Boyd, E. F., and D. L. Hartl. 1998. Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. J. Bacteriol. 180:1159-1165.
4. Brenner, D. J., A. C. McWhorter, A. Kai, A. G. Steigerwalt, and J. J. Farmer, 3rd. 1986. Enterobacter asburiae sp. nov., a new species found in clinical specimens, and reassignment of Erwinia dissolvens and Erwinia nimipressuralis to the genus Enterobacter as Enterobacter dissolvens comb. nov. and Enterobacter nimipressuralis comb. nov. J. Clin. Microbiol. 23:1114-1120.
5. Brisse, S., and J. Verhoef. 2001. Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC gene sequencing, and automated ribotyping. Int. J. Syst. Evol. Microbiol. 51:915-924.
6. Clementino, M. M., I. de Filippis, C. R. Nascimento, R. Branquinho, C. L. Rocha, and O. B. Martins. 2001. PCR analyses of tRNA intergenic spacer, 16S-23S internal transcribed spacer, and randomly amplified polymorphic DNA reveal inter- and intraspecific relationships of Enterobacter cloacae strains. J. Clin. Microbiol. 39:3865-3870.
7. Clermont, O., S. Bonacorsi, and E. Bingen. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66:4555-4558.
8. Cohan, F. M. 1994. Genetic exchange and evolutionary divergence in procaryotes. Am. Nat. 143:965-986.
9. Cosgrove, S. E., K. S. Kaye, G. M. Eliopoulous, and Y. Carmeli. 2002. Health and economic outcomes of the emergence of third-generation cephalosporin resistance in Enterobacter species. Arch. Intern. Med. 162:185-190.
10. Dauga, C. 2002. Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies. Int. J. Syst. Evol. Microbiol. 52:531-547.
11. Davin-Regli, A., C. Bosi, R. Charrel, E. Ageron, L. Papazian, P. A. Grimont, A. Cremieux, and C. Bollet. 1997. A nosocomial outbreak due to Enterobacter cloacae strains with the E. hormaechei genotype in patients treated with fluoroquinolones. J. Clin. Microbiol. 35:1008-1010.
12. de Man, P., E. van Der Veeke, M. Leemreijze, W. van Leeuwen, G. Vos, J. van Den Anker, H. Verbrugh, and A. van Belkum. 2001. Enterobacter species in a pediatric hospital: horizontal transfer or selection in individual patients? J. Infect. Dis. 184:211-214.
13. Dickey, R. S., and C. H. Zumoff. 1988. Emended description of Enterobacter cancerogenus comb. nov. (formerly Erwinia cancerogena). Int. J. Syst. Bacteriol. 38:371-374.
14. Dolina, M., and R. Peduzzi. 1993. Population genetics of human, animal, and environmental Yersinia strains. Appl. Environ. Microbiol. 59:442-450.
15. Dushay, M. S., B. Asling, and D. Hultmark. 1996. Origins of immunity: Relish, a compound Rel-like gene in the antibacterial defense of Drosophila. Proc. Natl. Acad. Sci. USA 93:10343-10347.
16. Farmer, J. J., 3rd, B. R. Davis, F. W. Hickman-Brenner, A. McWhorter, G. P. Huntley-Carter, M. A. Asbury, C. Riddle, H. G. Wathen-Grady, C. Elias, G. R. Fanning, et al. 1985. Biochemical identification of new species and biogroups of Enterobacteriaceae isolated from clinical specimens. J. Clin. Microbiol. 21:46-76.
17. Farmer, J. J., 3rd, G. R. Fanning, B. R. Davis, C. M. O'Hara, C. Riddle, F. W. Hickman-Brenner, M. A. Asbury, V. A. Lowery 3rd, and D. J. Brenner. 1985. Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens. J. Clin. Microbiol. 21:77-81.
18. Fernandez-Baca, V., F. Ballesteros, J. A. Hervas, P. Villalon, M. A. Dominguez, V. J. Benedi, and S. Alberti. 2001. Molecular epidemiological typing of Enterobacter cloacae isolates from a neonatal intensive care unit: three-year prospective study. J. Hosp. Infect. 49:173-182.
19. Goh, S. H., R. R. Facklam, M. Chang, J. E. Hill, G. J. Tyrrell, E. C. Burns, D. Chan, C. He, T. Rahim, C. Shaw, and S. M. Hemmingsen. 2000. Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequences. J. Clin. Microbiol. 38:3953-3959.
20. Goh, S. H., S. Potter, J. O. Wood, S. M. Hemmingsen, R. P. Reynolds, and A. W. Chow. 1996. HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci. J. Clin. Microbiol. 34:818-823.
21. Grimont, F., and P. A. Grimont. 1992. The genus Enterobacter, p. 2797-2815. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The procaryotes, 2nd ed. Springer Verlag, New York, N.Y.
22. Halda-Alija, L., S. P. Hendricks, and T. C. Johnston. 2001. Spatial and temporal variation of Enterobacter genotypes in sediments and the underlying hyporheic zone of an agricultural stream. Microb. Ecol. 42:286-294.
23. Keller, R., M. Z. Pedroso, R. Ritchmann, and R. M. Silva. 1998. Occurrence of virulence-associated properties in Enterobacter cloacae. Infect. Immun. 66:645-649.
24. Kosako, Y., K. Tamura, R. Sakazaki, and K. Miki. 1996. Enterobacter kobei sp. nov., a new species of the family Enterobacteriaceae resembling Enterobacter cloacae. Curr. Microbiol. 33:261-265.
25. Lindh, E., and J. Ursing. 1991. Genomic groups and biochemical profiles of clinical isolates of Enterobacter cloacae. APMIS 99:507-514.
26. Lobkovsky, E., P. C. Moews, H. Liu, H. Zhao, J. M. Frere, and J. R. Knox. 1993. Evolution of an enzyme activity: crystallographic structure at 2-A resolution of cephalosporinase from the ampC gene of Enterobacter cloacae P99 and comparison with a class A penicillinase. Proc. Natl. Acad. Sci. USA 90:11257-11261.
27. Maiden, M. C., J. A. Bygraves, E. Feil, G. Morelli, J. E. Russell, R. Urwin, Q. Zhang, J. Zhou, K. Zurth, D. A. Caugant, I. M. Feavers, M. Achtman, and B. G. Spratt. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. USA 95:3140-3145.
28. Marston, E. L., J. W. Sumner, and R. L. Regnery. 1999. Evaluation of intraspecies genetic variation within the 60-kDa heat-shock protein gene (groEL) of Bartonella species. Int. J. Syst. Bacteriol. 49:1015-1023.
29. Mollet, C., M. Drancourt, and D. Raoult. 1997. rpoB sequence analysis as a novel basis for bacterial identification. Mol. Microbiol. 26:1005-1011.
30. National Committee for Clinical Laboratory Standards. 2000. Performance standards for antimicrobial susceptibility testing; approved standard, 7th ed., vol. 20, no. 1. National Committee for Clinical Laboratory Standards, Villanova, Pa.
31. O'Hara, C. M., A. G. Steigerwalt, B. C. Hill, J. J. Farmer, 3rd, G. R. Fanning, and D. J. Brenner. 1989. Enterobacter hormaechei, a new species of the family Enterobacteraceae formerly known as enteric group 75. J. Clin. Microbiol. 27:2046-2049.
32. Palys, T., L. K. Nakamura, and F. M. Cohan. 1997. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47:1145-1156.
33. Rastogi, N., K. S. Goh, and M. Berchel. 1999. Species-specific identification of Mycobacterium leprae by PCR-restriction fragment length polymorphism analysis of the hsp65 gene. J. Clin. Microbiol. 37:2016-2019.
34. Roberts, D. P., P. D. Dery, I. Yucel, J. Buyer, M. A. Holtman, and D. Y. Kobayashi. 1999. Role of pfkA and general carbohydrate catabolism in seed colonization by Enterobacter cloacae. Appl. Environ. Microbiol. 65:2513-2519.
35. Roehrborn, A., L. Thomas, O. Potreck, C. Ebener, C. Ohmann, P. E. Goretzki, and H. D. Roher. 2001. The microbiology of postoperative peritonitis. Clin. Infect. Dis. 33:1513-1519.
36. Rottman, M., Y. Benzerara, B. Hanau-Bercot, C. Bizet, A. Philippon, and G. Arlet. 2002. Chromosomal ampC genes in Enterobacter species other than Enterobacter cloacae, and ancestral association of the ACT-1 plasmid-encoded cephalosporinase to Enterobacter asburiae. FEMS Microbiol Lett. 210:87-92.
37. Ryun Chung, Y., D. J. Brenner, A. G. Steigerwalt, B. Sup Kim, H. Tae Kim, and K. Yun Cho. 1993. Enterobacter pyrinus sp. nov., an organism associated with brown leaf spot disease of pear trees. Int. J. Syst. Bacteriol. 43:157-161.
38. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
39. Sanders, W. E., Jr., and C. C. Sanders. 1997. Enterobacter spp.: pathogens poised to flourish at the turn of the century. Clin. Microbiol. Rev. 10:220-241.
40. Sanders, W. E., Jr., J. H. Tenney, and R. E. Kessler. 1996. Efficacy of cefepime in the treatment of infections due to multiply resistant Enterobacter species. Clin. Infect. Dis. 23:454-461.
41. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S-rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
42. Steigerwalt, A. G., G. R. Fanning, M. A. Fife-Asbury, and D. J. Brenner. 1976. DNA relatedness among species of Enterobacter and Serratia. Can. J. Microbiol. 22:121-137.
43. Swofford, D. L. 1998. PAUP: phylogenetic analysis with parsimony (and other methods), version 4.0b10. Sinauer Associates, Sunderland, Mass..
44. Tang, Y. W., N. M. Ellis, M. K. Hopkins, D. H. Smith, D. E. Dodge, and D. H. Persing. 1998. Comparison of phenotypic and genotypic techniques for identification of unusual aerobic pathogenic gram-negative bacilli. J. Clin. Microbiol. 36:3674-3679.
45. Teng, L. J., P. R. Hsueh, J. C. Tsai, P. W. Chen, J. C. Hsu, H. C. Lai, C. N. Lee, and S. W. Ho. 2002. groESL sequence determination, phylogenetic analysis, and species differentiation for viridans group streptococci. J. Clin. Microbiol. 40:3172-3178.
46. Weischer, M., and H. J. Kolmos. 1993. Ribotyping of selected isolates of Enterobacter cloacae and clinical data related to biotype, phage type, O-serotype, and ribotype. APMIS 101:879-886.
47. Weischer, M., H. J. Kolmos, M. E. Kaufmann, and V. T. Rosdahl. 1993. Biotyping, phage typing, and O-serotyping of clinical isolates of Enterobacter cloacae. APMIS 101:838-844.