A novel method of nonlinear rapid feature selection for high dimensional data and its application in peptide QSAR modeling based on support vector machine

Wuli Huaxue Xuebao/ Acta Physico - Chimica Sinica

Volumn 27, Issue 7, 2011, Pages 1654-1660

  Dai, Zhi Jun ^a,b   Zhou, Wei ^a   Yuan, Zhe Ming ^a,b  

^a HUNAN AGRICULTURAL UNIVERSITY   (China)

^b Hunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization   (China)

Author keywords

Feature selection; High dimensional feature; Peptide; Quantitative sequence activity relationship; Support vector machine

Indexed keywords

EID: 79960141185     PISSN: 10006818     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (34)

1. Ding, J. L.; Ho, B. Drug Dev. Res. 2004, 62 (4), 317.
2. Sneath, P. H. A. J. Theor. Biol. 1966, 12 (2), 157.
3. Kidera, A.; Konishi, Y.; Oka, M.; Ooi, T.; Scheraga, H. A. J. Protein Chem. 1985, 4 (1), 23.
4. Hellberg, S.; Eriksson, L.; Jonsson, J.; Lindgren, F.; Sjöström, M.; Skagerberg, B.;Wold, S.; Andrews, P. Int. J. Pept. Protein Res. 1991, 37 (5), 414.
5. Sandberg, M.; Eriksson, L.; Jonsson, J.; Sjöström, M.;Wold, S. J. Med. Chem. 1998, 41 (14), 2481.
6. Liang, G. Z.; Mei, H.; Zhou, P.; Zhou, Y.; Li, Z. L. Acta Phys.-Chim. Sin. 2006, 22 (3), 388.
7. Zhou, Y.; Mei, H.; Yang, L.; Zhou, P.; Yang, S. B.; Li, Z, L. Chem. J. Chin. Univ. 2007, 28 (7), 1263.
8. Yang, S. B.; Xia, Z. N.; Shu, M.; Mei, H.; Lü, F. L.; Zhang, M.; Wu, Y. Q.; Li, Z. L. Chem. J. Chin. Univ. 2008, 29 (11), 2213.
9. Liang, G. Z.; Zhou, P.; Zhou, Y.; Zhang, Q. X.; Li, Z. L. Acta Chim. Sin. 2006, 64 (5), 393.
10. Li, Z. L.; Li, G. R.; Shu, M.; Sun, J. Y.; Yang, S. B.; Mei, H.; Zhang, M. J.; Zhou, P.;Wu, S. R.; Chen, G. H.; Lü, F. L.; Lü, T. T. Sci. China Ser. B: Chem. 2008, 38 (8), 745.
11. Kawashima, S.; Pokarowski, P.; Pokarowska, M.; Kolinski, A.; Katayama, T.; Kanehisa, M. Nucleic Acids Res. 2008, 36, D202.
12. Dash, M.; Liu, H. Intell. Data Anal. 1997, 1 (3), 131.
13. Kohavi, R.; John, G. H. Artif. Intel. 1997, 97 (1-2), 273.
14. Cover, T. M. IEEE Trans. Syst. Man Cybern. 1974, 4 (2), 116.
15. Colannino, J.; Juban, J. The Best K Measurements are Not the K Best. http://cgm.cs.mcgill.ca/~athens/cs644/Projects/2004/JustinColannino-JeremieJuban/best.html, (accessed Mar 22, 2011).
16. Cortes, C.; Vapnik, V. Mach. Learn. 1995, 20 (3), 273.
17. Hou, T. J.; Xu, Z.; Zhang, W.; McLaughlin, A, W.; Case, D. A.; Xu, Y.;Wang, W. Mol. Cell. Proteomics 2009, 8, 639.
18. Hou, T. J.; Zhang, W.; Case, D. A.;Wang, W. J. Mol. Biol. 2008, 376, 1201.
19. Wang, H.; Zhang, B. J.; Liu, X. Z.; Luo, D. Z.; Zhong, S. B. Adv. Mater. Res. 2011, 143, 1254.
20. Zhang, Y. M.; Jin, Q.;Wang, S. T.; Ren, R. Comput. Biol. Med. 2011, 41 (5), 271.
21. Yuan, Z. M.; Zhang, Y. S.; Xiong, J. Y. Scientia Agricultura Sinica 2008, 41 (8), 2485.
22. Zhang, Y. S.; Yuan, Z. M.; Xiong, J. Y.; Zhou, T. J. Acta Ecologica Sinica 2007, 27 (6), 2419.
23. Tan, X. S.;Wang, Z. M.; Tan, S. Q.; Yuan, Z. M.; Xiong, X. Y.; Journal of System Simulation 2009, 21 (24), 7795.
24. Yuan, Z. M.; Tan, X. S. Acta Agronomica Sinica 2010, 36 (7), 1176.
25. Tan, X. S.; Yuan, Z. M.; Zhou, T. J.;Wang, C. J.; Xiong, J. Y. Chem. J. Chin. Univ. 2008, 29 (1), 95.
26. Tropsha, A.; Gramatica, P.; Gombar, V. K. QSAR Comb. Sci. 2003, 22 (1), 69.
27. Cocchi, M.; Johansson, E. Quant. Struct.-Act. Relat. 1993, 12 (1), 1.
28. Collantes, E. R.; Dunn, W. J. J. Med. Chem. 1995, 38 (14), 2705.
29. Mei, H.; Zhou, Y.; Sun, L. L.; Li, Z. L. Chemistry 2005, (7), 534.
30. Mei, H.; Liang, G. Z.; Zhou, Y.; Li, Z. L. Chin. Sci. Bull. 2005, 50 (16), 1703.
31. Richardson, J. S.; Richardson, D. C. Science 1988, 240 (4859), 1648.
32. Cornette, J. L.; Cease, K. B.; Margalit, H.; Spouge, J. L.; Berzofsky, J. A.; DeLisi, C. J. Mol. Biol. 1987, 195 (3), 659.
33. Pliška, V.; Schmidt, M.; Fauchère, J. L. J. Chromatogr. A 1981, 216, 79.
34. Hassell, C. H.; Krohn, A.; Moody, C. J.; Thomas, W. A. J. Chem. Soc. Perkin. Trans. 1 1984, 23, 155.