Time-lapse imaging of neural development: Zebrafish lead the way into the fourth dimension

Genesis

Volumn 49, Issue 7, 2011, Pages 534-545

  Rieger, Sandra ^a   Wang, Fang ^a   Sagasti, Alvaro ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Imaging; Neural development; Neurons; Time lapse; Zebrafish

Indexed keywords

CADHERIN; DNA; GREEN FLUORESCENT PROTEIN; RED FLUORESCENT PROTEIN; TRANSCRIPTION FACTOR GAL4;

ADULT ANIMAL; CELL DIVISION; CELL LABELING; CELL MIGRATION; CONFOCAL LASER MICROSCOPY; EMBRYO; EMBRYO DEVELOPMENT; GENE EXPRESSION; GRANULE CELL; GROWTH CONE; NERVE CELL DIFFERENTIATION; NERVE CELL PLASTICITY; NERVE GROWTH; NERVOUS SYSTEM DEVELOPMENT; NONHUMAN; PRIORITY JOURNAL; REPORTER GENE; RETINA DEVELOPMENT; REVIEW; RHOMBENCEPHALON; TIME LAPSE IMAGING; TRANSGENE; ZEBRA FISH;

ANIMALS; DEVELOPMENTAL BIOLOGY; MICROSCOPY, CONFOCAL; MOLECULAR IMAGING; NEUROBIOLOGY; NEUROGENESIS; TIME-LAPSE IMAGING; ZEBRAFISH;

DANIO RERIO; VERTEBRATA;

EID: 79960124035     PISSN: 1526954X     EISSN: 1526968X     Source Type: Journal    
DOI: 10.1002/dvg.20729     Document Type: Review

References (79)

1. Adolf B, Chapouton P, Lam CS, Topp S, Tannhauser B, Strahle U, Gotz M, Bally-Cuif L. 2006. Conserved and acquired features of adult neurogenesis in the zebrafish telencephalon. Dev Biol 295: 278-293.
2. Akitake CM, Macurak M, Halpern ME, Goll MG. 2011. Transgenerational analysis of transcriptional silencing in zebrafish. Dev Biol. [Epub ahead of print].
3. Alexandre P, Reugels AM, Barker D, Blanc E, Clarke JD. 2010. Neurons derive from the more apical daughter in asymmetric divisions in the zebrafish neural tube. Nat Neurosci 13: 673-679.
4. Allende ML, Manzanares M, Tena JJ, Feijoo CG, Gomez-Skarmeta JL. 2006. Cracking the genome's second code: Enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos. Methods 39: 212-219.
5. Ando R, Hama H, Yamamoto-Hino M, Mizuno H, Miyawaki A. 2002. An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein. Proc Natl Acad Sci USA 99: 12651-12656.
6. Ando R, Mizuno H, Miyawaki A. 2004. Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science 306: 1370-1373.
7. Aramaki S, Hatta K. 2006. Visualizing neurons one-by-one in vivo: Optical dissection and reconstruction of neural networks with reversible fluorescent proteins. Dev Dyn 235: 2192-2199.
8. Arrenberg AB, Del Bene F, Baier H. 2009. Optical control of zebrafish behavior with halorhodopsin. Proc Natl Acad Sci USA 106: 17968-17973.
9. Asakawa K, Kawakami K. 2009. The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish. Methods 49: 275-281.
10. Asakawa K, Suster ML, Mizusawa K, Nagayoshi S, Kotani T, Urasaki A, Kishimoto Y, Hibi M, Kawakami K. 2008. Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish. Proc Natl Acad Sci USA 105: 1255-1260.
11. Baier H, Scott EK. 2009. Genetic and optical targeting of neural circuits and behavior-Zebrafish in the spotlight. Curr Opin Neurobiol 19: 553-560.
12. Baker BJ, Mutoh H, Dimitrov D, Akemann W, Perron A, Iwamoto Y, Jin L, Cohen LB, Isacoff EY, Pieribone VA, Hughes T, Knopfel T. 2008. Genetically encoded fluorescent sensors of membrane potential. Brain Cell Biol 36: 53-67.
13. Balciunas D, Davidson AE, Sivasubbu S, Hermanson SB, Welle Z, Ekker SC. 2004. Enhancer trapping in zebrafish using the Sleeping Beauty transposon. BMC Genomics 5: 62.
14. Ben Fredj N, Hammond S, Otsuna H, Chien CB, Burrone J, Meyer MP. 2010. Synaptic activity and activity-dependent competition regulates axon arbor maturation, growth arrest, and territory in the retinotectal projection. J Neurosci 30: 10939-10951.
15. Bhatt DH, Otto SJ, Depoister B, Fetcho JR. 2004. Cyclic AMP-induced repair of zebrafish spinal circuits. Science 305: 254-258.
16. Caron SJ, Prober D, Choy M, Schier AF. 2008. In vivo birthdating by BAPTISM reveals that trigeminal sensory neuron diversity depends on early neurogenesis. Development 135: 3259-3269.
17. Chapouton P, Adolf B, Leucht C, Tannhauser B, Ryu S, Driever W, Bally-Cuif L. 2006. her5 expression reveals a pool of neural stem cells in the adult zebrafish midbrain. Development 133: 4293-4303.
18. Chenn A, McConnell SK. 1995. Cleavage orientation and the asymmetric inheritance of Notch1 immunoreactivity in mammalian neurogenesis. Cell 82: 631-641.
19. Collins RT, Linker C, Lewis J. 2010. MAZe: A tool for mosaic analysis of gene function in zebrafish. Nat Methods 7: 219-223.
20. Cox KJ, Fetcho JR. 1996. Labeling blastomeres with a calcium indicator: A non-invasive method of visualizing neuronal activity in zebrafish. J Neurosci Methods 68: 185-191.
21. Davison JM, Akitake CM, Goll MG, Rhee JM, Gosse N, Baier H, Halpern ME, Leach SD, Parsons MJ. 2007. Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish. Dev Biol 304: 811-824.
22. Distel M, Wullimann MF, Koster RW. 2009. Optimized Gal4 genetics for permanent gene expression mapping in zebrafish. Proc Natl Acad Sci USA 106: 13365-13370.
23. Downes GB, Waterbury JA, Granato M. 2002. Rapid in vivo labeling of identified zebrafish neurons. Genesis 34: 196-202.
24. Dreosti E, Odermatt B, Dorostkar MM, Lagnado L. 2009. A genetically encoded reporter of synaptic activity in vivo. Nat Methods 6: 883-889.
25. Esengil H, Chang V, Mich JK, Chen JK. 2007. Small-molecule regulation of zebrafish gene expression. Nat Chem Biol 3: 154-155.
26. Fahrenkrug SC, Clark KJ, Dahlquist MO, Hackett PBJr. 1999. Dicistronic gene expression in developing zebrafish. Mar Biotechnol (NY) 1: 552-561.
27. Godinho L, Williams PR, Claassen Y, Provost E, Leach SD, Kamermans M, Wong RO. 2007. Nonapical symmetric divisions underlie horizontal cell layer formation in the developing retina in vivo. Neuron 56: 597-603.
28. Grandel H, Kaslin J, Ganz J, Wenzel I, Brand M. 2006. Neural stem cells and neurogenesis in the adult zebrafish brain: Origin, proliferation dynamics, migration and cell fate. Dev Biol 295: 263-277.
29. Gurskaya NG, Verkhusha VV, Shcheglov AS, Staroverov DB, Chepurnykh TV, Fradkov AF, Lukyanov S, Lukyanov KA. 2006. Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light. Nat Biotechnol 24: 461-465.
30. Habuchi S, Ando R, Dedecker P, Verheijen W, Mizuno H, Miyawaki A, Hofkens J. 2005. Reversible single- molecule photoswitching in the GFP-like fluorescent protein Dronpa. Proc Natl Acad Sci USA 102: 9511-9516.
31. Halpern ME, Rhee J, Goll MG, Akitake CM, Parsons M, Leach SD. 2008. Gal4/UAS transgenic tools and their application to zebrafish. Zebrafish 5: 97-110.
32. Hatta K, Tsujii H, Omura T. 2006. Cell tracking using a photoconvertible fluorescent protein. Nat Protoc 1: 960-967.
33. Hua JY, Smear MC, Baier H, Smith SJ. 2005. Regulation of axon growth in vivo by activity-based competition. Nature 434: 1022-1026.
34. Hutson LD, Chien CB. 2002. Pathfinding and error correction by retinal axons: The role of astray/robo2. Neuron 33: 205-217.
35. Huttner WB, Brand M. 1997. Asymmetric division and polarity of neuroepithelial cells. Curr Opin Neurobiol 7: 29-39.
36. Jing L, Lefebvre JL, Gordon LR, Granato M. 2009. Wnt signals organize synaptic prepattern and axon guidance through the zebrafish unplugged/MuSK receptor. Neuron 61: 721-733.
37. Jontes JD, Emond MR, Smith SJ. 2004. In vivo trafficking and targeting of N-cadherin to nascent presynaptic terminals. J Neurosci 24: 9027-9034.
38. Kasemeier-Kulesa JC, Bradley R, Pasquale EB, Lefcort F, Kulesa PM. 2006. Eph/ephrins and N-cadherin coordinate to control the pattern of sympathetic ganglia. Development 133: 4839-4847.
39. Kawakami K, Takeda H, Kawakami N, Kobayashi M, Matsuda N, Mishina M. 2004. A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish. Dev Cell 7: 133-144.
40. Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS. 2007. Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks-A fundamental feature of vertebrate genomes. Genome Biol 8 (Suppl 1): S4.
41. Kikuta H, Kawakami K. 2009. Transient and stable transgenesis using tol2 transposon vectors. Methods Mol Biol 546: 69-84.
42. Koster RW, Fraser SE. 2001. Tracing transgene expression in living zebrafish embryos. Dev Biol 233: 329-346.
43. Laplante M, Kikuta H, Konig M, Becker TS. 2006. Enhancer detection in the zebrafish using pseudotyped murine retroviruses. Methods 39: 189-198.
44. Lele Z, Folchert A, Concha M, Rauch GJ, Geisler R, Rosa F, Wilson SW, Hammerschmidt M, Bally-Cuif L. 2002. parachute/n-cadherin is required for morphogenesis and maintained integrity of the zebrafish neural tube. Development 129: 3281-3294.
45. Liu Y, Halloran MC. 2005. Central and peripheral axon branches from one neuron are guided differentially by Semaphorin3D and transient axonal glycoprotein-1. J Neurosci 25: 10556-10563.
46. Lobo NF, Fraser TS, Adams JA, Fraser MJJr. 2006. Interplasmid transposition demonstrates piggyBac mobility in vertebrate species. Genetica 128: 347-357.
47. Marriott G, Mao S, Sakata T, Ran J, Jackson DK, Petchprayoon C, Gomez TJ, Warp E, Tulyathan O, Aaron HL, Isacoff EY, Yan Y. 2008. Optical lock-in detection imaging microscopy for contrast-enhanced imaging in living cells. Proc Natl Acad Sci USA 105: 17789-17794.
48. Martin SM, O'Brien GS, Portera-Cailliau C, Sagasti A. 2010. Wallerian degeneration of zebrafish trigeminal axons in the skin is required for regeneration and developmental pruning. Development 137: 3985-3994.
49. McLean DL, Fetcho JR. 2008. Using imaging and genetics in zebrafish to study developing spinal circuits in vivo. Dev Neurobiol 68: 817-834.
50. McLean DL, Fetcho JR. 2009. Spinal interneurons differentiate sequentially from those driving the fastest swimming movements in larval zebrafish to those driving the slowest ones. J Neurosci 29: 13566-13577.
51. Meyer MP, Smith SJ. 2006. Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms. J Neurosci 26: 3604-3614.
52. Miesenbock G, De Angelis DA, Rothman JE. 1998. Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins. Nature 394: 192-195.
53. Miyata T. 2008. Development of three-dimensional architecture of the neuroepithelium: Role of pseudostratification and cellular "community." Dev Growth Differ 50 (Suppl 1): S105-S112.
54. Niell CM, Meyer MP, Smith SJ. 2004. In vivo imaging of synapse formation on a growing dendritic arbor. Nat Neurosci 7: 254-260.
55. Niethammer P, Grabher C, Look AT, Mitchison TJ. 2009. A tissue-scale gradient of hydrogen peroxide mediates rapid wound detection in zebrafish. Nature 459: 996-999.
56. Norden C, Young S, Link BA, Harris WA. 2009. Actomyosin is the main driver of interkinetic nuclear migration in the retina. Cell 138: 1195-1208.
57. O'Brien GS, Martin SM, Sollner C, Wright GJ, Becker CG, Portera-Cailliau C, Sagasti A. 2009a. Developmentally regulated impediments to skin reinnervation by injured peripheral sensory axon terminals. Curr Biol 19: 2086-2090.
58. O'Brien GS, Rieger S, Martin SM, Cavanaugh AM, Portera-Cailliau C, Sagasti A. 2009b. Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos. J Vis Exp 2: pe30.
59. Pan F, Gan WB. 2008. Two-photon imaging of dendritic spine development in the mouse cortex. Dev Neurobiol 68: 771-778.
60. Parinov S, Kondrichin I, Korzh V, Emelyanov A. 2004. Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo. Dev Dyn 231: 449-459.
61. Paulus JD, Willer GB, Willer JR, Gregg RG, Halloran MC. 2009. Muscle contractions guide rohon-beard peripheral sensory axons. J Neurosci 29: 13190-13201.
62. Provost E, Rhee J, Leach SD. 2007. Viral 2A peptides allow expression of multiple proteins from a single ORF in transgenic zebrafish embryos. Genesis 45: 625-629.
63. Richler E, Chaumont S, Shigetomi E, Sagasti A, Khakh BS. 2008. Tracking transmitter-gated P2X cation channel activation in vitro and in vivo. Nat Methods 5: 87-93.
64. Rieger S, Senghaas N, Walch A, Koster RW. 2009. Cadherin-2 controls directional chain migration of cerebellar granule neurons. PLoS Biol 7: e1000240.
65. Sagasti A, Guido MR, Raible DW, Schier AF. 2005. Repulsive interactions shape the morphologies and functional arrangement of zebrafish peripheral sensory arbors. Curr Biol 15: 804-814.
66. Sato T, Takahoko M, Okamoto H. 2006. HuC:Kaede, a useful tool to label neural morphologies in networks in vivo. Genesis 44: 136-142.
67. Sato-Maeda M, Tawarayama H, Obinata M, Kuwada JY, Shoji W. 2006. Sema3a1 guides spinal motor axons in a cell- and stage-specific manner in zebrafish. Development 133: 937-947.
68. Scott EK, Mason L, Arrenberg AB, Ziv L, Gosse NJ, Xiao T, Chi NC, Asakawa K, Kawakami K, Baier H. 2007. Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Nat Methods 4: 323-326.
69. Smirnov EB, Puchkov VF. 2004. Characteristics of cellular proliferation in the developing human retina. Neurosci Behav Physiol 34: 643-648.
70. Suster ML, Sumiyama K, Kawakami K. 2009. Transposon-mediated BAC transgenesis in zebrafish and mice. BMC Genomics 10: 477.
71. Svoboda KR, Linares AE, Ribera AB. 2001. Activity regulates programmed cell death of zebrafish Rohon-Beard neurons. Development 128: 3511-3520.
72. Tawk M, Bianco IH, Clarke JD. 2009. Focal electroporation in zebrafish embryos and larvae. Methods Mol Biol 546: 145-151.
73. Thummel R, Burket CT, Brewer JL, Sarras MPJr, Li L, Perry M, McDermott JP, Sauer B, Hyde DR, Godwin AR. 2005. Cre-mediated site-specific recombination in zebrafish embryos. Dev Dyn 233: 1366-1377.
74. Tsutsui H, Karasawa S, Shimizu H, Nukina N, Miyawaki A. 2005. Semi-rational engineering of a coral fluorescent protein into an efficient highlighter. EMBO Rep 6: 233-238.
75. Tu S, Johnson SL. 2010. Clonal analyses reveal roles of organ founding stem cells, melanocyte stem cells and melanoblasts in establishment, growth and regeneration of the adult zebrafish fin. Development 137: 3931-3939.
76. Volkmann K, Rieger S, Babaryka A, Koster RW. 2008. The zebrafish cerebellar rhombic lip is spatially patterned in producing granule cell populations of different functional compartments. Dev Biol 313: 167-180.
77. Wingate RJ. 2001. The rhombic lip and early cerebellar development. Curr Opin Neurobiol 11: 82-88.
78. Wright MA, Mo W, Nicolson T, Ribera AB. 2010. In vivo evidence for transdifferentiation of peripheral neurons. Development 137: 3047-3056.
79. Yang Z, Jiang H, Lin S. 2009. Bacterial artificial chromosome transgenesis for zebrafish. Methods Mol Biol 546: 103-116.