Evaluation of the reverse transcription loop-mediated isothermal amplification (RT-LAMP) as a screening method for the detection of influenza viruses in the fecal materials of water birds

Journal of Veterinary Medical Science

Volumn 73, Issue 6, 2011, Pages 753-758

  Yoshida, Hiromi ^a   Sakoda, Yoshihiro ^a   Endo, Mayumi ^a   Motoshima, Masayuki ^a   Yoshino, Fumi ^a   Yamamoto, Naoki ^a   Okamatsu, Masatoshi ^a   Soejima, Takahiro ^b   Senba, Syouhei ^b   Kanda, Hidetoshi ^b   Kida, Hiroshi ^b,c,d  

^a HOKKAIDO UNIVERSITY   (Japan)

^b EIKEN CHEMICAL CO LTD   (Japan)

^c HOKKAIDO UNIVERSITY   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Fecal material; Influenza virus; Reverses transcription loop mediated isothermal amplification (RT LAMP); Screening; Surveillance

Indexed keywords

MATRIX PROTEIN; VIRUS RNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; AVIAN INFLUENZA; CHEMISTRY; DISEASE CARRIER; DUCK; EVALUATION; FECES; GENETICS; INFLUENZA VIRUS A H3N2; ISOLATION AND PURIFICATION; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; PHYLOGENY; REVERSE TRANSCRIPTION; SENSITIVITY AND SPECIFICITY; VIROLOGY;

ANIMALS; DISEASE RESERVOIRS; DUCKS; FECES; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA IN BIRDS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PHYLOGENY; REVERSE TRANSCRIPTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; VIRAL MATRIX PROTEINS;

ANAS; AVES; INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE;

EID: 79960078283     PISSN: 09167250     EISSN: 13477439     Source Type: Journal    
DOI: 10.1292/jvms.10-0505     Document Type: Article

References (29)

1. Banks, J., Speidel, E. S., Moore, E., Plowright, L., Piccirillo, A., Capua, I., Cordioli, P., Fioretti, A. and Alexander, D. J. 2001. Changes in the haemagglutinin and the neuraminidase genes prior to the emergence of highly pathogenic H7N1 avian influenza viruses in Italy. Arch. Virol. 146: 963-973.
2. Chen, H., Smith, G. J., Zhang, S. Y., Qin, K., Wang, J., Li, K. S., Webster, R. G., Peiris, J. S. and Guan, Y. 2005. Avian flu: H5N1 virus outbreak in migratory waterfowl. Nature 436: 191-192.
3. Chen, H. T., Zhang, J., Sun, D. H., Ma, L. N., Liu, X. T., Cai, X. P. and Liu, Y. S. 2008. Development of reverse transcription loop-mediated isothermal amplification for rapid detection of H9 avian influenza virus. J. Virol. Methods 151: 200-203.
4. Compton, J. 1991. Nucleic acid sequence-based amplification. Nature 350: 91-92.
5. Fouchier, R. A., Munster, V., Wallensten, A., Bestebroer, T. M., Herfst, S., Smith, D., Rimmelzwaan, G. F., Olsen, B. and Osterhaus, A. D. 2005. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from blackheaded gulls. J. Virol. 79: 2814-2822.
6. Guatelli, J. C., Whitfield, K. M., Kwoh, D. Y., Barringer, K. J., Richman, D. D. and Gingeras, T. R. 1990. Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. Proc. Natl. Acad. Sci. U.S.A. 87: 1874-1878.
7. Higuchi, R., Dollinger, G., Walsh, P. S. and Griffith, R. 1992. Simultaneous amplification and detection of specific DNA sequences. Biotechnology (N.Y.) 10: 413-417.
8. Hoffmann, E., Neumann, G., Kawaoka, Y., Hobom, G. and Webster, R. G. 2000. A DNA transfection system for generation of influenza A virus from eight plasmids. Proc. Natl. Acad. Sci. U.S.A. 97: 6108-6113.
9. Hoffmann, E., Stech, J., Guan, Y., Webster, R. G. and Perez, D. R. 2001. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 146: 2275-2289.
10. Horimoto, T., Rivera, E., Pearson, J., Senne, D., Krauss, S., Kawaoka, Y. and Webster, R. G. 1995. Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico. Virology 213: 223-230.
11. Imai, M., Ninomiya, A., Minekawa, H., Notomi, T., Ishizaki, T., Tashiro, M. and Odagiri, T. 2006. Development of H5-RTLAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection. Vaccine 24: 6679-6682.
12. Ito, M., Watanabe, M., Nakagawa, N., Ihara, T. and Okuno, Y. 2006. Rapid detection and typing of influenza A and B by loop-mediated isothermal amplification: comparison with immunochromatography and virus isolation. J. Virol. Methods 135: 272-275.
13. Ito, T., Goto, H., Yamamoto, E., Tanaka, H., Takeuchi, M., Kuwayama, M., Kawaoka, Y. and Otsuki, K. 2001. Generation of a highly pathogenic avian influenza A virus from an avirulent field isolate by passaging in chickens. J. Virol. 75: 4439-4443.
14. Ito, T., Okazaki, K., Kawaoka, Y., Takada, A., Webster, R. G. and Kida, H. 1995. Perpetuation of influenza A viruses in Alaskan waterfowl reservoirs. Arch. Virol. 140: 1163-1172.
15. Kawaoka, Y. and Webster, R. G. 1985. Evolution of the A/ Chicken/Pennsylvania/83 (H5N2) influenza virus. Virology 146: 130-137.
16. Kida, H., Kawaoka, Y., Naeve, C. W. and Webster, R. G. 1987. Antigenic and genetic conservation of H3 influenza virus in wild ducks. Virology 159: 109-119.
17. Kida, H. and Yanagawa, R. 1979. Isolation and characterization of influenza a viruses from wild free-flying ducks in Hokkaido, Japan. Zentralbl. Bakteriol. Orig. A 244: 135-143.
18. Kida, H., Yanagawa, R. and Matsuoka, Y. 1980. Duck influenza lacking evidence of disease signs and immune response. Infect. Immun. 30: 547-553.
19. Manzoor, R., Sakoda, Y., Mweene, A., Tsuda, Y., Kishida, N., Bai, G. R., Kameyama, K., Isoda, N., Soda, K., Naito, M. and Kida, H. 2008. Phylogenic analysis of the M genes of influenza viruses isolated from free-flying water birds from their Northern Territory to Hokkaido, Japan. Virus Genes 37: 144-152.
20. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N. and Hase, T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28: E63.
21. OIE. 2010. Facts & Figures: Avian Influenza H5N1 notified in 2003-2010 [cited 2010 September 1]. Available from http:// www.oie.int/eng/info_ev/en_AI_factoids_2.htm
22. Okazaki, K., Takada, A., Ito, T., Imai, M., Takakuwa, H., Hatta, M., Ozaki, H., Tanizaki, T., Nagano, T., Ninomiya, A., Demenev, V. A., Tyaptirganov, M. M., Karatayeva, T. D., Yamnikova, S. S., Lvov, D. K. and Kida, H. 2000. Precursor genes of future pandemic influenza viruses are perpetuated in ducks nesting in Siberia. Arch. Virol. 145: 885-893.
23. Sakoda, Y., Sugar, S., Batchluun, D., Erdene-Ochir, T. O., Okamatsu, M., Isoda, N., Soda, K., Takakuwa, H., Tsuda, Y., Yamamoto, N., Kishida, N., Matsuno, K., Nakayama, E., Kajihara, M., Yokoyama, A., Takada, A., Sodnomdarjaa, R. and Kida, H. 2010. Characterization of H5N1 highly pathogenic avian influenza virus strains isolated from migratory waterfowl in Mongolia on the way back from the southern Asia to their northern territory. Virology 406: 88-94.
24. Shivakoti, S., Ito, H., Murase, T., Ono, E., Takakuwa, H., Yamashiro, T., Otsuki, K. and Ito, T. 2010. Development of reverse transcription-loop-mediated isothermal amplification (RT-LAMP) assay for detection of avian influenza viruses in field specimens. J. Vet. Med. Sci. 72: 519-523.
25. Silvano, F. D., Yoshikawa, M., Shimada, A., Otsuki, K. and Umemura, T. 1997. Enhanced neuropathogenicity of avian influenza A virus by passages through air sac and brain of chicks. J. Vet. Med. Sci. 59: 143-148.
26. Uchida, Y., Mase, M., Yoneda, K., Kimura, A., Obara, T., Kumagai, S., Saito, T., Yamamoto, Y., Nakamura, K., Tsukamoto, K. and Yamaguchi, S. 2008. Highly pathogenic avian influenza virus (H5N1) isolated from whooper swans, Japan. Emerg. Infect. Dis. 14: 1427-1429.
27. Walker, G. T., Fraiser, M. S., Schram, J. L., Little, M. C., Nadeau, J. G. and Malinowski, D. P. 1992. Strand displacement amplification-an isothermal, in vitro DNA amplification technique. Nucleic Acids Res. 20: 1691-1696.
28. Walker, G. T., Little, M. C., Nadeau, J. G. and Shank, D. D. 1992. Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system. Proc. Natl. Acad. Sci. U.S.A. 89: 392-396.
29. Webster, R. G., Bean, W. J., Gorman, O. T., Chambers, T. M. and Kawaoka, Y. 1992. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56: 152-179.