Development of reverse transcription loop-mediated isothermal amplification for rapid detection of H9 avian influenza virus

Journal of Virological Methods

Volumn 151, Issue 2, 2008, Pages 200-203

  Chen, Hao tai ^a   Zhang, Jie ^a   Sun, De hui ^a   Ma, Li na ^a   Liu, Xiang tao ^a   Cai, Xue peng ^a   Liu, Yong sheng ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Detection; H9 subtype of avian influenza virus; Reverse transcription loop mediated isothermal amplification (RT LAMP); RT PCR

Indexed keywords

ARTICLE; BIRD; CLOACA; COMPARATIVE STUDY; CONTROLLED STUDY; DETECTION LIMIT; GENE AMPLIFICATION; INFLUENZA VIRUS; INFLUENZA VIRUS A H3N2; INFLUENZA VIRUS A H5N1; INFLUENZA VIRUS H9; MOUTH MUCOSA; NEWCASTLE DISEASE PARAMYXOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARAMETER; PRIORITY JOURNAL; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; VIRUS CARRIER; VIRUS DETECTION; VIRUS ISOLATION; VIRUS STRAIN;

ANIMALS; BASE SEQUENCE; BIRDS; DNA, VIRAL; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; TRANSCRIPTION, GENETIC;

AVES; AVIAN INFLUENZA VIRUS; NEWCASTLE DISEASE VIRUS;

EID: 46949095720     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2008.05.009     Document Type: Article

References (20)

1. Alexander D.J. Report on avian influenza in the eastern hemisphere during 1997-2002. Avian Dis. 47 (2003) 792-797
2. Bista B.R., Ishwad C., Wadowsky R.M., Manna P., Randhawa P.S., Gupta G., Adhikari M., Tyagi R., Gasper G., and Vats A. Development of a loop-mediated isothermal amplification assay for rapid detection of BK virus. J. Clin. Microbiol. 45 (2007) 1581-1587
3. Cameron K.R., Gregory V., Banks J., Brown I.H., Alexander D.J., Hay A.J., and Lin Y.P. H9N2 subtype influenza A viruses in poultry in Pakistan are closely related to the H9N2 viruses responsible for human infection in Hong Kong. Virology 278 (2000) 36-41
4. Ellis J.S., and Zambon M.C. Molecular diagnosis of influenza. Rev. Med. Virol. 12 (2002) 375-389
5. Fukuda S., Takao S., Kuwayama M., Shimazu Y., and Miyazaki K. Rapid detection of norovirus from fecal specimens by real-time reverse transcription-loop-mediated isothermal amplification assay. J. Clin. Microbial. 44 (2007) 1376-1381
6. Guan Y., Shortridge K.F., Krauss S., and Webster R.G. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong. Proc. Natl. Acad. Sci. U.S.A. 89 16 (1999) 9363-9367
7. Homme P.J., and Easterday B.C. Avian influenza virus infections. I. Characteristics of influenza A-turkey-Wisconsin-1966 virus. Avian Dis. 14 (1970) 66-74
8. Imai M., Ninomiya A., Minekawa H., Notomi T., Ishizaki T., Van Tu P., Tien N.T., Tashiro M., and Odagiri T. Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method. J. Virol. Methods 141 (2007) 173-180
9. Kawaoka Y., Chambers T.M., Sladen W.L., and Webster R.G. Is the gene pool of influenza viruses in shorebirds and gulls different from that in wild ducks?. Virology 163 (1988) 247-250
10. Lee C.W., Song C.S., Lee Y.J., Mo I.P., Garcia M., Suarez D.L., and Kim S.J. Sequence analysis of the hemagglutinin gene of H9N2 Korean avian influenza viruses and assessment of the pathogenic potential of isolate MS96. Avian Dis. 44 (2000) 527-535
11. Li K.S., Xu K.M., Peiris J.S., Poon L.L., Yu K.Z., Yuen K.Y., Shortridge K.F., Webster R.G., and Guan Y. Characterization of H9 subtype influenza viruses from the ducks of southern China: a candidate for the next influenza pandemic in humans?. J. Virol. 77 (2003) 6988-6994
12. Naeem K., Ullah A., Manvell R.J., and Alexander D.J. Avian influenza A subtype H9N2 in poultry in Pakistan. Vet. Rec. 145 (1999) 560
13. Nili H., and Asasi K. Natural cases and an experimental study of H9N2 avian influenza in commercial broiler chickens of Iran. Avian Pathol. 31 (2002) 247-252
14. Nagamine K., Hase T., and Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell Probes 16 (2002) 223-229
15. Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., and Hase T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28 (2000) e63
16. Perk S., Panshin A., Shihmanter E., Gissin I., Pokamunski S., Pirak M., and Lipkind M. Ecology and molecular epidemiology of H9N2 avian influenza viruses isolated in Israel during 2000-2004 epizootic. Dev. Biol. 124 (2006) 201-209
17. Peiris J.S., Guan Y., Markwell D., Ghose P., Webster R.G., and Shortridge K.F. Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern China: potential for genetic reassortment?. J. Virol. 75 (2001) 9679-9686
18. Playford E.G., and Dwyer D.E. Laboratory diagnosis of influenza virus infection. Pathology 34 (2002) 115-125
19. Sharp G.B., Kawaoka Y., Jones D.J., Bean W.J., Pryor S.P., Hinshaw V., and Webster R.G. Coinfection of wild ducks by influenza A viruses: distribution patterns and biological significance. J. Virol. 71 (1997) 6128-6135
20. Shortridge K.F. Pandemic influenza: a zoonosis?. Seminars in respiratory infections 7 (1992) 11-25