메뉴 건너뛰기




Volumn 6, Issue 7, 2011, Pages

Phylogenomic evidence for a Myxococcal contribution to the Mitochondrial Fatty Acid Beta-Oxidation

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL PROTEIN; ACYL COENZYME A; FATTY ACID; PROTEIN;

EID: 79960054403     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021989     Document Type: Article
Times cited : (6)

References (52)
  • 1
    • 79960068536 scopus 로고    scopus 로고
    • Early eukaryotes in Precambrian oceans
    • In: Gargaud M, López-García P, Martin M, editors, Cambridge, Cambridge University Press
    • Javaux EJ, (2011) Early eukaryotes in Precambrian oceans. In: Gargaud M, López-García P, Martin M, editors. Origins and Evolution of Life An Astrobiological Perspective Cambridge Cambridge University Press pp. 414-449.
    • (2011) Origins and Evolution of Life An Astrobiological Perspective , pp. 414-449
    • Javaux, E.J.1
  • 2
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • Gray MW, Burger G, Lang BF, (1999) Mitochondrial evolution. Science 283: 1476-1481.
    • (1999) Science , vol.283 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 3
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
    • Timmis JN, Ayliffe MA, Huang CY, Martin W, (2004) Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet 5: 123-135.
    • (2004) Nat Rev Genet , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 4
    • 0042266921 scopus 로고    scopus 로고
    • Reconstruction of the proto-mitochondrial metabolism
    • Gabaldon T, Huynen MA, (2003) Reconstruction of the proto-mitochondrial metabolism. Science 301: 609.
    • (2003) Science , vol.301 , pp. 609
    • Gabaldon, T.1    Huynen, M.A.2
  • 5
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Embley TM, Martin W, (2006) Eukaryotic evolution, changes and challenges. Nature 440: 623-630.
    • (2006) Nature , vol.440 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 6
    • 4143093598 scopus 로고    scopus 로고
    • A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes
    • Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, et al. (2004) A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol Biol Evol 21: 1643-1660.
    • (2004) Mol Biol Evol , vol.21 , pp. 1643-1660
    • Esser, C.1    Ahmadinejad, N.2    Wiegand, C.3    Rotte, C.4    Sebastiani, F.5
  • 7
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • Martin W, Muller M, (1998) The hydrogen hypothesis for the first eukaryote. Nature 392: 37-41.
    • (1998) Nature , vol.392 , pp. 37-41
    • Martin, W.1    Muller, M.2
  • 9
    • 79551715713 scopus 로고    scopus 로고
    • Cell evolution: gene transfer agents and the origin of mitochondria
    • Richards TA, Archibald JM, Cell evolution: gene transfer agents and the origin of mitochondria. Curr Biol 21: R112-114.
    • Curr Biol , vol.21 , pp. 112-114
    • Richards, T.A.1    Archibald, J.M.2
  • 10
    • 1542572798 scopus 로고    scopus 로고
    • Metabolic integration during the evolutionary origin of mitochondria
    • Searcy DG, (2003) Metabolic integration during the evolutionary origin of mitochondria. Cell Res 13: 229-238.
    • (2003) Cell Res , vol.13 , pp. 229-238
    • Searcy, D.G.1
  • 11
    • 33748369465 scopus 로고    scopus 로고
    • The last eukaryotic common ancestor (LECA): acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon
    • Margulis L, Chapman M, Guerrero R, Hall J, (2006) The last eukaryotic common ancestor (LECA): acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon. Proc Natl Acad Sci U S A 103: 13080-13085.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 13080-13085
    • Margulis, L.1    Chapman, M.2    Guerrero, R.3    Hall, J.4
  • 12
    • 33646360208 scopus 로고    scopus 로고
    • Selective forces for the origin of the eukaryotic nucleus
    • Lopez-Garcia P, Moreira D, (2006) Selective forces for the origin of the eukaryotic nucleus. Bioessays 28: 525-533.
    • (2006) Bioessays , vol.28 , pp. 525-533
    • Lopez-Garcia, P.1    Moreira, D.2
  • 13
    • 0031735879 scopus 로고    scopus 로고
    • Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis
    • Moreira D, Lopez-Garcia P, (1998) Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J Mol Evol 47: 517-530.
    • (1998) J Mol Evol , vol.47 , pp. 517-530
    • Moreira, D.1    Lopez-Garcia, P.2
  • 15
    • 0029980554 scopus 로고    scopus 로고
    • Recent advances in the social and developmental biology of the myxobacteria
    • Dworkin M, (1996) Recent advances in the social and developmental biology of the myxobacteria. Microbiol Rev 60: 70-102.
    • (1996) Microbiol Rev , vol.60 , pp. 70-102
    • Dworkin, M.1
  • 18
    • 77954874614 scopus 로고    scopus 로고
    • Regulation of dynamic polarity switching in bacteria by a Ras-like G-protein and its cognate GAP
    • Leonardy S, Miertzschke M, Bulyha I, Sperling E, Wittinghofer A, et al. (2010) Regulation of dynamic polarity switching in bacteria by a Ras-like G-protein and its cognate GAP. Embo J 29: 2276-2289.
    • (2010) Embo J , vol.29 , pp. 2276-2289
    • Leonardy, S.1    Miertzschke, M.2    Bulyha, I.3    Sperling, E.4    Wittinghofer, A.5
  • 19
    • 0030885712 scopus 로고    scopus 로고
    • Fatty acid activation
    • Watkins PA, (1997) Fatty acid activation. Prog Lipid Res 36: 55-83.
    • (1997) Prog Lipid Res , vol.36 , pp. 55-83
    • Watkins, P.A.1
  • 20
    • 73149117145 scopus 로고    scopus 로고
    • Diversity and dispersal of a ubiquitous protein family: acyl-CoA dehydrogenases
    • Shen YQ, Lang BF, Burger G, (2009) Diversity and dispersal of a ubiquitous protein family: acyl-CoA dehydrogenases. Nucleic Acids Res 37: 5619-5631.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5619-5631
    • Shen, Y.Q.1    Lang, B.F.2    Burger, G.3
  • 21
    • 25444531436 scopus 로고    scopus 로고
    • Human acyl-CoA dehydrogenase-9 plays a novel role in the mitochondrial beta-oxidation of unsaturated fatty acids
    • Ensenauer R, He M, Willard JM, Goetzman ES, Corydon TJ, et al. (2005) Human acyl-CoA dehydrogenase-9 plays a novel role in the mitochondrial beta-oxidation of unsaturated fatty acids. J Biol Chem 280: 32309-32316.
    • (2005) J Biol Chem , vol.280 , pp. 32309-32316
    • Ensenauer, R.1    He, M.2    Willard, J.M.3    Goetzman, E.S.4    Corydon, T.J.5
  • 22
    • 0036154857 scopus 로고    scopus 로고
    • Control of mitochondrial beta-oxidation flux
    • Eaton S, (2002) Control of mitochondrial beta-oxidation flux. Prog Lipid Res 41: 197-239.
    • (2002) Prog Lipid Res , vol.41 , pp. 197-239
    • Eaton, S.1
  • 23
    • 0036775842 scopus 로고    scopus 로고
    • The Claisen condensation in biology
    • Heath RJ, Rock CO, (2002) The Claisen condensation in biology. Nat Prod Rep 19: 581-596.
    • (2002) Nat Prod Rep , vol.19 , pp. 581-596
    • Heath, R.J.1    Rock, C.O.2
  • 24
    • 23944508511 scopus 로고    scopus 로고
    • Phylogenetic analysis of eukaryotic thiolases suggests multiple proteobacterial origins
    • Pereto J, Lopez-Garcia P, Moreira D, (2005) Phylogenetic analysis of eukaryotic thiolases suggests multiple proteobacterial origins. J Mol Evol 61: 65-74.
    • (2005) J Mol Evol , vol.61 , pp. 65-74
    • Pereto, J.1    Lopez-Garcia, P.2    Moreira, D.3
  • 25
    • 0034647935 scopus 로고    scopus 로고
    • Molecular cloning and characterization of a human mitochondrial ceramidase
    • El Bawab S, Roddy P, Qian T, Bielawska A, Lemasters JJ, et al. (2000) Molecular cloning and characterization of a human mitochondrial ceramidase. J Biol Chem 275: 21508-21513.
    • (2000) J Biol Chem , vol.275 , pp. 21508-21513
    • El Bawab, S.1    Roddy, P.2    Qian, T.3    Bielawska, A.4    Lemasters, J.J.5
  • 26
    • 46349103594 scopus 로고    scopus 로고
    • A mitochondrial protein compendium elucidates complex I disease biology
    • Pagliarini DJ, Calvo SE, Chang B, Sheth SA, Vafai SB, et al. (2008) A mitochondrial protein compendium elucidates complex I disease biology. Cell 134: 112-123.
    • (2008) Cell , vol.134 , pp. 112-123
    • Pagliarini, D.J.1    Calvo, S.E.2    Chang, B.3    Sheth, S.A.4    Vafai, S.B.5
  • 27
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Groisman EA, (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 28
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: rates of change and exchange
    • Lawrence JG, Ochman H, (1997) Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol 44: 383-397.
    • (1997) J Mol Evol , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 29
    • 0033816775 scopus 로고    scopus 로고
    • Predicted highly expressed genes of diverse prokaryotic genomes
    • Karlin S, Mrazek J, (2000) Predicted highly expressed genes of diverse prokaryotic genomes. J Bacteriol 182: 5238-5250.
    • (2000) J Bacteriol , vol.182 , pp. 5238-5250
    • Karlin, S.1    Mrazek, J.2
  • 30
    • 0032804381 scopus 로고    scopus 로고
    • Detecting alien genes in bacterial genomes
    • Mrazek J, Karlin S, (1999) Detecting alien genes in bacterial genomes. Ann N Y Acad Sci 870: 314-329.
    • (1999) Ann N Y Acad Sci , vol.870 , pp. 314-329
    • Mrazek, J.1    Karlin, S.2
  • 31
    • 0033670249 scopus 로고    scopus 로고
    • Horizontal gene transfer in bacterial and archaeal complete genomes
    • Garcia-Vallve S, Romeu A, Palau J, (2000) Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res 10: 1719-1725.
    • (2000) Genome Res , vol.10 , pp. 1719-1725
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 32
    • 34547905383 scopus 로고    scopus 로고
    • Detecting laterally transferred genes: use of entropic clustering methods and genome position
    • Azad RK, Lawrence JG, (2007) Detecting laterally transferred genes: use of entropic clustering methods and genome position. Nucleic Acids Res 35: 4629-4639.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4629-4639
    • Azad, R.K.1    Lawrence, J.G.2
  • 33
    • 34250634847 scopus 로고    scopus 로고
    • The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth
    • McInerney MJ, Rohlin L, Mouttaki H, Kim U, Krupp RS, et al. (2007) The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth. Proc Natl Acad Sci U S A 104: 7600-7605.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 7600-7605
    • McInerney, M.J.1    Rohlin, L.2    Mouttaki, H.3    Kim, U.4    Krupp, R.S.5
  • 34
    • 65549171650 scopus 로고    scopus 로고
    • Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids
    • Sousa DZ, Smidt H, Alves MM, Stams AJ, (2009) Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids. FEMS Microbiol Ecol 68: 257-272.
    • (2009) FEMS Microbiol Ecol , vol.68 , pp. 257-272
    • Sousa, D.Z.1    Smidt, H.2    Alves, M.M.3    Stams, A.J.4
  • 35
    • 0033067186 scopus 로고    scopus 로고
    • Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms
    • Jackson BE, Bhupathiraju VK, Tanner RS, Woese CR, McInerney MJ, (1999) Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms. Arch Microbiol 171: 107-114.
    • (1999) Arch Microbiol , vol.171 , pp. 107-114
    • Jackson, B.E.1    Bhupathiraju, V.K.2    Tanner, R.S.3    Woese, C.R.4    McInerney, M.J.5
  • 37
    • 0037319801 scopus 로고    scopus 로고
    • A new type of a multifunctional beta-oxidation enzyme in euglena
    • Winkler U, Saftel W, Stabenau H, (2003) A new type of a multifunctional beta-oxidation enzyme in euglena. Plant Physiol 131: 753-762.
    • (2003) Plant Physiol , vol.131 , pp. 753-762
    • Winkler, U.1    Saftel, W.2    Stabenau, H.3
  • 39
    • 34547793558 scopus 로고    scopus 로고
    • The origin of mitochondria in light of a fluid prokaryotic chromosome model
    • Esser C, Martin W, Dagan T, (2007) The origin of mitochondria in light of a fluid prokaryotic chromosome model. Biol Lett 3: 180-184.
    • (2007) Biol Lett , vol.3 , pp. 180-184
    • Esser, C.1    Martin, W.2    Dagan, T.3
  • 40
    • 0033082247 scopus 로고    scopus 로고
    • Mosaic bacterial chromosomes: a challenge en route to a tree of genomes
    • Martin W, (1999) Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. Bioessays 21: 99-104.
    • (1999) Bioessays , vol.21 , pp. 99-104
    • Martin, W.1
  • 41
    • 0037471674 scopus 로고    scopus 로고
    • The function of genomes in bioenergetic organelles
    • discussion 37-18
    • Allen JF, (2003) The function of genomes in bioenergetic organelles. Philos Trans R Soc Lond B Biol Sci 358: 19-37; discussion 37-18.
    • (2003) Philos Trans R Soc Lond B Biol Sci , vol.358 , pp. 19-37
    • Allen, J.F.1
  • 42
    • 84988044805 scopus 로고    scopus 로고
    • The energetics of genome complexity
    • Lane N, Martin W, The energetics of genome complexity. Nature 467: 929-934.
    • Nature , vol.467 , pp. 929-934
    • Lane, N.1    Martin, W.2
  • 43
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H, (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298.
    • (2008) Brief Bioinform , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 44
    • 67650757433 scopus 로고    scopus 로고
    • trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T, (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972-1973.
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutierrez, S.1    Silla-Martinez, J.M.2    Gabaldon, T.3
  • 45
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • Stamatakis A, Hoover P, Rougemont J, (2008) A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57: 758-771.
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 46
    • 71849101311 scopus 로고    scopus 로고
    • CIPRES. 2009-08-04. URL:. Accessed: 2009-08-04. (Archived by WebCite(r) at)
    • Miller MA, Holder MT, Vos R, Midford PE, Liebowitz T, et al. The CIPRES Portals. CIPRES. 2009-08-04. URL:http://www.phylo.org/sub_sections/portal. Accessed: 2009-08-04. (Archived by WebCite(r) at http://www.webcitation.org/5imQlJeQa).
    • The CIPRES Portals
    • Miller, M.A.1    Holder, M.T.2    Vos, R.3    Midford, P.E.4    Liebowitz, T.5
  • 47
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 48
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 49
    • 61449201423 scopus 로고    scopus 로고
    • IslandViewer: an integrated interface for computational identification and visualization of genomic islands
    • Langille MG, Brinkman FS, (2009) IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25: 664-665.
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.1    Brinkman, F.S.2
  • 50
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard P, Wishart DS, (2005) Circular genome visualization and exploration using CGView. Bioinformatics 21: 537-539.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 51
    • 70749083848 scopus 로고    scopus 로고
    • AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses
    • Kumar S, Skjaeveland A, Orr RJ, Enger P, Ruden T, et al. (2009) AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinformatics 10: 357.
    • (2009) BMC Bioinformatics , vol.10 , pp. 357
    • Kumar, S.1    Skjaeveland, A.2    Orr, R.J.3    Enger, P.4    Ruden, T.5
  • 52
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • Emanuelsson O, Nielsen H, Brunak S, von Heijne G, (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016.
    • (2000) J Mol Biol , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    von Heijne, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.