High resolution mass spectrometry approaches for the quantification of proteins using stable isotopically labeled peptide

American Pharmaceutical Review

Volumn 14, Issue 4, 2011, Pages 21-32

  Goodenough, Angela K ^a  

^a BRISTOL MYERS SQUIBB   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRYPSIN;

CHROMATOGRAPHY; DIGESTION; MASS SPECTROMETRY; REVIEW;

EID: 79959970162     PISSN: 10998012     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (35)

1. John, H., Walden, M., Schäfer, S., Genz, S., Forssmann, W.-G. "Analytical Procedures for the Quantification of Peptides in Pharmaceutical Research by Liquid-Chromatography-Mass Spectrometry." Anal. Bioanal. Chem. 2004, 378(4), 883-897. (Pubitemid 40890201)
2. Tamvakopoulos, C. "Mass Spectrometry for the Quantification of Bioactive Peptides." Mass Spectrom. Rev. 2007, 26(3), 389-402. (Pubitemid 46750376)
3. Doherty, M.K., Beynon, R.J., Whitfield, P.D. "Proteomics and Naturally Occurring Animal Diseases: Opportunities for Animal and Human Medicine." Proteomics Clin. Appl. 2008, 2(2), 135-141. (Pubitemid 351284895)
4. Klase, Z.A., Van Duyne, R., Kashanchi, F. "Identification of Potential Drug Targets Using Genomics and Proteomics: A Systems Approach." Advances in Pharmacol. 2008, 56, 327-368.
5. John, H. "Liquid Chromatography-Mass Spectrometry in Peptide Drug Discovery and Development." Anal. Bioanal. Chem. 2005, 371(1), 51-53. (Pubitemid 40249191)
6. Koomen, J., Hawke, D., Kobayashi, R. "Developing an Understanding of Proteomics: An Introduction to Biological Mass Spectrometry." Cancer Invest. 2005, 23(1), 47-59. (Pubitemid 40344200)
7. Domon, B., Aebersold, R. "Mass Spectrometry and Protein Analysis." Science 2006, 312(5771), 212-217.
8. Fenn, J.B., Mann, M., Meng, C.K., Wong, S.F., Whitehouse, C.M. "Electrospray Ionization for Mass Spectrometry of Large Biomolecules." Science 1989, 246(4926), 64-71. (Pubitemid 19252085)
9. Karas, M., Hillenkamp, F. "Laser Desorption Ionization of Proteins with Molecular Masses Exceeding 10,000 Daltons." Anal. Chem. 1988, 60(20), 2299-2301.
10. Bunk, D.M., Welch, M.J. "Electrospray Ionization Mass Spectrometry for the Quantitation of Albumin in Human Serum." J. Am. Soc. Mass Spectrom. 1997, 8(12), 1247-1254. (Pubitemid 28487050)
11. Gordon, E.F., Mansoori, B.A., Carroll, C.F., Muddiman, D.C. "Hydropathic Influence on the Quantification of Equine Heart Cytochrome C Using Relative Ion Abundance Measurements by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry." J. Mass Spectrom. 1999, 34(10), 1055-1062. (Pubitemid 29473720)
12. King, R., Bonfiglio, R., Fernandez-Metzler, C., Miller-Stien, C., Olah, T. "Mechanistic Investigation of Ionization Suppression in Electrospray Ionization." J. Am. Soc. Mass Spectrom. 2000, 11(11), 942-950. (Pubitemid 34546664)
13. Barnidge, D.R., Goodmanson, M.K., Klee, G.G., Muddiman, D.C. "Absolute Quantification of the Model Biomarker Prostate-Specific Antigen in Serum by LC-MS/MS Using Protein Cleavage and Isotope Dilution Mass Spectrometry." J. Proteome Res. 2004, 3(3), 644-652. (Pubitemid 39207371)
14. Dass, C., Kusmierz, J.J., Desiderio, D.M. "Mass Spectrometric Detection of Endogenous β-Endorphin." Biol. Mass Spectrom. 1991, 20(3), 130-138.
15. Gerber, S.A., Rush, J., Stemman, O., Kirschner, M.W., Gygi, S.P. "Absolute Quantification of Proteins and Phosphoproteins from Cell Lysates by Tandem MS" Proc. Natl. Acad. Sci. USA. 2003, 100(12), 6940-6945. (Pubitemid 36706372)
16. Mallick, P., Schirle, M., Chen, S.S., Flory, M.R., Lee, H., Martin, D., Ranish, J., Raught, B., Schmitt, R., Werner, T., Kuster, B., Aebersold, R. "Computational Prediction of Proteolytic Peptides for Quantitative Proteomics." Nat. Biotechnol. 2007, 25(1), 125-131. (Pubitemid 46098780)
17. Cantone, J.L., Xu-Lin, A., Toyn, J.H., Drexler, D. "Application of Quantitative LC-MS Surrogate Peptide Methodology in the Analysis of the Amyloid Beta Peptide (Aβ) Biosynthetic Intermediate Protein APP-βCTF." J. Neurosci. Methods 2009, 180(2), 255-260.
18. Tirumalai, R.S., Chan, K.C., Prieto, D.A., Issaq, H.J., Conrads, T.P., Veenstra, T.D. "Characterization of the Low Molecular Weight Human Serum Proteome." Mol. Cell. Proteomics 2003, 2(10), 1096-1103.
19. Björhall, K.; Miliotis, T., Davidsson, P. "Comparison of Different Depletion Strategies for Improved Resolution in Proteomic Analysis of Human Serum Samples." Proteomics 2005, 5(1), 307-317. (Pubitemid 40189661)
20. DuBois, M., Fenaille, F., Clement, G., Lechmann, M., Tabet, J.-C., Ezan, E., Becher, F. "Immunopurification and Mass Spectrometric Quantification of the Active Form of a Chimeric Therapeutic Antibody in Human Serum." Anal. Chem. 2008, 80(5), 1737-1745. (Pubitemid 351429580)
21. Wu, S.T.; Ouyang, Z.; Olah, T.V.; Jemal, M. "A Strategy for Liquid Chromatography/Tandem Mass Spectrometry Based Quantitation of Pegylated Protein Drugs in Plasma Using Plasma Protein Precipitation with Water-Miscible Organic Solvents and Subsequent Trypsin Digestion to Generate Surrogate Peptides for Detection." Rapid Commun. Mass Spectrom. 2011, 25(2), 281-290.
22. Anderson, L., Hunter, C.L. "Quantitative Mass Spectrometric Selected reaction monitoring Assays for Major Plasma Proteins." Mol. Cell. Proteomics 2006, 5(4), 573-588.
23. Barnidge, D.R., Hall, G.D., Stocker, J.L., Muddiman, D.C. "Evaluation of a Cleavable Stable Isotope Labeled Synthetic Peptide for the Absolute Protein Quantification Using LC-MS/MS." J. Proteome Res. 2004, 3(3), 658-661. (Pubitemid 39207373)
24. Shipkova, P., Drexler, D.M., Langish, R., Smalley, J., Salyan, M.E., Sanders, M. "Application of Ion Trap Technology to Liquid Chromatography/Mass Spectrometry Quantification of Large Peptides." Rapid Commun. Mass Spectrom. 2008, 22(9), 1359-1366. (Pubitemid 351655854)
25. Goodenough, A.K., Turesky, R.J. "A Novel LC/MSn Method for the Characterization and Quantification of 2′-Deoxyguanosine Adducts of the Dietary Carcinogen 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine by 2-D Linear Quadrupole Mass Spectrometry." Chem. Res. Toxicol. 2007, 20(2), 263-276. (Pubitemid 46408863)
26. Liu, T.; Belov, M.E., Jaitly, N., Qian, W-.J., Smith, R.D. "Accurate Mass Measurements in Proteomics." Chem. Rev. 2007, 107(8), 3621-3653. (Pubitemid 47322746)
27. Keire, D.A., Whitelegge, J.P.; Souda, P.; Faull, K.F., Bassilian, S., Reidelberger, R.D., Haver, A.C., Reeve, J.R. Jr. "PYY(1-36) is the Major Form of PYY in Rat Distal Small Intestine: Quantification Using High-Resolution Mass Spectrometry." Regul. Pept. 2010, 165(2-3), 151-157.
28. Marshall, A.G., Hendrickson, C.L., Jackson, G.S. "Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: A Primer." Mass Spectrom. Rev. 1998, 17(1), 1-35. (Pubitemid 128629493)
29. Makarov, A. "Electrostatic Axially Harmonic Orbital Trapping: A High-Performance Technique of Mass Analysis." Anal. Chem. 2000, 72(6), 1156-1162. (Pubitemid 30163769)
30. Hu, Q., Noll, R.J., Li, H. Makarov, A., Hardman, M., Cooks, R.G. "The Orbitrap: A New Mass Spectrometer." J. Mass Spectrom. 2005, 40(4), 430-443. (Pubitemid 40637866)
31. Schwartz, J.C., Senko, M.W., Syka, J.E.P. "A Two-Dimensional Quadrupole Mass Ion Trap Mass Spectrometer." J. Amer. Soc. Mass Spectrom. 2002, 13(6), 659-669. (Pubitemid 36876020)
32. Park, Z-.Y., Russell, D.H. "Thermal Denaturation: A Useful Technique in Peptide Mass Mapping" Anal. Chem. 2000, 72(11), 2667-2670. (Pubitemid 30395680)
33. Hagman, C.; Ricke, D.; Ewert, S.; Bek, S.; Falchetto, R.; Bitsch, F. "Absolute Quantification of Monoclonal Antibodies in Biofluids by Liquid Chromatography-Tandem Mass Spectrometry." Anal. Chem. 2008, 80(4), 1290-1296. (Pubitemid 351272367)
34. Yu, Y-.Q., Gilar, M., Lee, P.J., Bouvier, E.S.P., Gebler, J.C. "Enzyme-Friendly, Mass Spectrometry-Compatible Surfactant for In-Solution Enzymatic Digestion of Proteins." Anal. Chem. 2003, 75(21), 6023-6028. (Pubitemid 37356487)
35. Duan, X., Young, R., Straubinger, R.M., Page, B., Cao, J., Wang, H., Yu, H., Canty, J.M. Jr., Qu, J. "A Straightforward and Highly Efficient Precipitation/On-Pellet Digestion Procedure Coupled to Long Gradient Nano-LC Separation and Oribtrap Mass Spectrometry for the Label-Free Expression Profiling of Swine Heart Mitochondrial Proteome." J. Proteome Res. 2009, 8(6), 2838-2850.