Synthesis and decay of Varicella zoster virus transcripts

Journal of NeuroVirology

Volumn 17, Issue 3, 2011, Pages 281-287

  Azarkh, Yevgeniy ^a   Dölken, Lars ^b   Nagel, Maria ^a   Gilden, Don ^a   Cohrs, Randall J ^a  

^a UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF MUNICH   (Germany)

Author keywords

4 thiouridine; Newly synthesized RNA; Phosphonoacetic acid; RNA decay; RNA synthesis; Varicella zoster virus

Indexed keywords

MESSENGER RNA; THIOURIDINE; VIRUS DNA; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; DNA REPLICATION; HALF LIFE TIME; NONHUMAN; NONSENSE MEDIATED MRNA DECAY; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SYNTHESIS; VARICELLA ZOSTER VIRUS; VIROGENESIS; VIRUS INFECTION; VIRUS TRANSCRIPTION;

CELL LINE, TUMOR; CHICKENPOX; DNA, VIRAL; HALF-LIFE; HERPESVIRUS 3, HUMAN; HUMANS; OPEN READING FRAMES; PHOSPHONOACETIC ACID; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA STABILITY; RNA, MESSENGER; RNA, VIRAL; THIOURIDINE; TRANSCRIPTION, GENETIC; VIRAL PROTEINS; VIRUS REPLICATION;

HUMAN HERPESVIRUS 3;

EID: 79959942933     PISSN: 13550284     EISSN: 15382443     Source Type: Journal    
DOI: 10.1007/s13365-011-0029-2     Document Type: Article

References (15)

1. Carpenter JE, Henderson EP, Grose C (2009) Enumeration of an extremely high particle-to-PFU ratio for varicella-zoster virus. J Virol 83:6917-6921
2. Cohen JI (2010) The varicella-zoster virus genome. Curr Top Microbiol Immunol 342:1-14
3. Cohrs RJ, Srock K, Barbour MB, Owens G, Mahalingam R, Devlin ME, Wellish M, Gilden DH (1994) Varicella-zoster virus (VZV) transcription during latency in human ganglia: construction of a cDNA library from latently infected human trigeminal ganglia and detection of a VZV transcript. J Virol 68:7900-7908 (Pubitemid 24362677)
4. Cohrs RJ, Hurley MP, Gilden DH (2003) Array analysis of viral gene transcription during lytic infection of cells in tissue culture with varicella-zoster virus. J Virol 77:11718-11732 (Pubitemid 37271670)
5. Cohrs RJ, Gilden DH (2007) Prevalence and abundance of latently transcribed varicella-zoster virus genes in human ganglia. J Virol 81:2950-2956 (Pubitemid 46447058)
6. Cole NL, Grose C (2003) Membrane fusion mediated by herpesvirus glycoproteins: the paradigm of varicella-zoster virus. Rev Med Virol 13:207-222 (Pubitemid 36875190)
7. Dölken L, Ruzsics Z, Rädel B, Friedel CC, Zimmer R, Mages J, Hoffmann R, Dickinson P, Forster T, Ghazal P, Koszinowski UH (2008) High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14:1959-1972
8. Kennedy PGE, Grinfeld E, Craigon M, Vierlinger K, Roy D, Forster T, Ghazal P (2005) Transcriptomal analysis of varicella-zoster virus infection using long oligonucleotide-based microarrays. J Gen Virol 86:2673-2684 (Pubitemid 41410456)
9. Kenzelmann M, Maertens S, Hergenhahn M, Kueffer S, Hotz-Wagenblatt A, Li L, Wang S, Ittrich C, Lemberger T, Arribas R, Jonnakuty S, Hollstein MC, Schmid W, Gretz N, Gröne HJ, Schütz G (2007) Microarray analysis of newly synthesized RNA in cells and animals. Proc Natl Acad Sci USA 10:6164-6169 (Pubitemid 47186066)
10. -ΔΔCT method. Methods 25:402-408 (Pubitemid 34164012)
11. May DC, Miller MR, Rapp F (1977) The effect of phosphonoacetic acid on the in vitro replication of varicella-zoster virus. Intervirology 8:83-91 (Pubitemid 8068971)
12. Nagel MA, Gilden D, Shade T, Gao B, Cohrs RJ (2009) Rapid and sensitive detection of 68 unique varicella zoster virus gene transcripts in five multiplex reverse transcription-polymerase chain reactions. J Virol Methods 157:62-68
13. Oroskar AA, Read GS (1989) Control of mRNA stability by the virion host shutoff function of herpes simplex virus. J Virol 63:1897-1906 (Pubitemid 19107783)
14. Ross J (1995) mRNA stability in mammalian cells. Microbiol Rev 59:423-450
15. Tischer BK, Kaufer BB, Sommer M, Wussow F, Arvin AM, Osterrieder N (2007) A self-excisable infectious bacterial artificial chromosome clone of varicella-zoster virus allows analysis of the essential tegument protein encoded by ORF9. J Virol 81:13200-13208 (Pubitemid 350156957)