Array Analysis of Viral Gene Transcription during Lytic Infection of Cells in Tissue Culture with Varicella-Zoster Virus

Journal of Virology

Volumn 77, Issue 21, 2003, Pages 11718-11732

  Cohrs, Randall J ^a,b   Hurley, Michael P ^a   Gilden, Donald H ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; PLASMID VECTOR; PROTEIN ORF9; SPACER DNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; VIRUS DNA;

ARTICLE; AUTONOMIC GANGLION; CELL FREE SYSTEM; CHICKENPOX; CHILDHOOD DISEASE; CONTROLLED STUDY; DNA SEQUENCE; DNA SYNTHESIS; DORSAL ROOT; GENE AMPLIFICATION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE INSERTION; GENE MAPPING; GENETIC TRANSCRIPTION; HERPES VIRUS; HERPES ZOSTER; ISOTOPE LABELING; NEUROLOGICAL COMPLICATION; NONHUMAN; NORTHERN BLOTTING; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PREDICTION; PRIORITY JOURNAL; QUANTITATIVE ASSAY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STRUCTURAL GENE; TISSUE CULTURE; TRANSCRIPTION REGULATION; VARICELLA ZOSTER VIRUS; VIRUS GENE; VIRUS INFECTION; VIRUS REACTIVATION; VZV GENE;

ANIMALS; BASE SEQUENCE; CELL LINE; DNA, INTERGENIC; GENE EXPRESSION REGULATION, VIRAL; HERPESVIRUS 3, HUMAN; HUMANS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TRANSCRIPTION, GENETIC; VIRAL PROTEINS; VIRUS ACTIVATION; VIRUS LATENCY;

EID: 0142060832     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.77.21.11718-11732.2003     Document Type: Article

References (46)

1. Blaho, J. A., C. Mitchell, and B. Roizman. 1994. An amino acid sequence shared by the herpes simplex virus 1 alpha regulatory proteins 0, 4, 22, and 27 predicts the nucleotidylylation of the UL21, UL31, UL47, and UL49 gene products. J. Biol. Chem. 269:17401-17410.
2. Bresnahan, W. A., and T. Shenk. 2000. A subset of viral transcripts packaged within human cytomegalovirus particles. Science 288:2373-2376.
3. Brunell, P. A., L. C. Ren, J. I. Cohen, and S. E. Straus. 1999. Viral gene expression in rat trigeminal ganglia following neonatal infection with varicella-zoster virus. J. Med. Virol. 58:286-290.
4. Cohen, J. I., and H. Nguyen. 1998. Varicella-zoster virus ORF61 deletion mutants replicate in cell culture, but a mutant with stop codons in ORF61 reverts to wild-type virus. Virology 246:306-316.
5. Cohrs, R., and H. Rouhandeh. 1987. Analysis of Herpesvirus sylvilagus-induced proteins in infected rabbit kidney cells by two-dimensional gel electrophoresis. Intervirology 28:206-220.
6. Cohrs, R. J., K. Srock, M. B. Barbour, G. Owens, R. Mahalingam, M. E. Devlin, M. Wellish, and D. H. Gilden. 1994. Varicella-zoster virus (VZV) transcription during latency in human ganglia: construction of a cDNA library from latently infected human trigeminal ganglia and detection of a VZV transcript. J. Virol. 68:7900-7908.
7. Cohrs, R. J., M. B. Barbour, R. Mahalingam, M. Wellish, and D. H. Gilden. 1995. Varicella-zoster virus (VZV) transcription during latency in human ganglia: prevalence of VZV gene 21 transcripts in latently infected human ganglia. J. Virol. 69:2674-2678.
8. Cohrs, R. J., M. Barbour, and D. H. Gilden. 1996. Varicella-zoster virus (VZV) transcription during latency in human ganglia: detection of transcripts mapping to genes 21, 29, 62, and 63 in a cDNA library enriched for VZV RNA. J. Virol. 70:2789-2796.
9. Cox, E., S. Reddy, I. Iofin, and J. I. Cohen. 1998. Varicella-zoster virus ORF57, unlike its pseudorabies virus UL3.5 homolog, is dispensable for viral replication in cell culture. Virology 250:205-209.
10. Davison, A. J., and J. E. Scott. 1986. The complete DNA sequence of varicella-zoster virus. J. Gen. Virol. 67:1759-1816.
11. Fourney, R. M., J. Mlyakoshi, R. S. Day III, and M. C. Paterson. 1988. Northern blotting: efficient RNA staining and transfer. Focus 10:5-7.
12. Garcia-Valcarcel, M., W. J. Fowler, D. R. Harper, D. J. Jeffries, and G. T. Layton. 1997. Cloning, expression, and immunogenicity of the assembly protein of varicella-zoster virus and detection of the products of open reading frame 33. J. Med. Virol. 53:332-339.
13. Gilden, D. H., Y. Shtram, A. Friedmann, M. Wellish, M. Devlin, A. Cohen, N. Fraser, and Y. Becker. 1982. Extraction of cell-associated varicella-zoster virus DNA with Triton X-100-NaCl. J. Virol. Methods 4:263-275.
14. Gomi, Y., H. Sunamachi, Y. Mori, K. Nagaike, M. Takahashi, and K. Yamanishi. 2002. Comparison of the complete DNA sequences of the Oka varicella vaccine and its parental virus. J. Virol. 76:11447-11459.
15. Grose, C., D. M. Perrotta, P. A. Brunell, and G. C. Smith. 1979. Cell-free varicella-zoster virus in cultured human melanoma cells. J. Gen. Virol. 43:15-27.
16. Harper, D. R., E. A. Sanders, and M. A. Ashcroft. 1995. Varicella-zoster virus assembly protein p32/p36 is present in DNA-containing as well as immature capsids. J. Med. Virol. 46:144-147.
17. Higaki, S., B. M. Gebhardt, W. J. Lukiw, H. W. Thompson, and J. M. Hill. 2002. Effect of immunosuppression on gene expression in the herpes simplex virus type 1 latently infected mouse trigeminal ganglion. Investig. Ophthalmol. Vis. Sci. 43:1862-1869
18. Jones, J. O., and A. M. Arvin. 2003. Microarray analysis of host cell gene transcription in response to varicella-zoster virus infection of human T cells and fibroblasts in vitro and SCIDhu skin xenografts in vivo. J. Virol. 77:1268-1280.
19. Kemble, G. W., P. Annunziato, O. Lungu, R. E. Winter, T. A. Cha, S. J. Silverstein, and R. R. Spaete. 2000. Open reading frame S/L of varicella-zoster virus encodes a cytoplasmic protein expressed in infected cells. J. Virol. 74:11311-11321.
20. Kennedy, P. G., E. Grinfeld, and J. W. Gow. 1999. Latent Varicella-zoster virus in human dorsal root ganglia. Virology 258:451-454.
21. Kinchington, P. R., and J. I. Cohen. 2000. Viral proteins, p. 74-104. In A. M. Arvin and A. A. Gershon (ed.), Varicella-zoster virus. Cambridge University Press, Cambridge, United Kingdom.
22. Leslie, J., F. J. Rixon, and J. McLauchlan. 1996. Overexpression of the herpes simplex virus type 1 tegument protein VP22 increases its incorporation into virus particles. Virology 220:60-68.
23. Loomis, J. S., J. B. Bowzard, R. J. Courtney, and J. W. Wills. 2001. Intracellular trafficking of the UL11 tegument protein of herpes simplex virus type 1. J. Virol. 75:12209-12219.
24. MacLean, C. A., B. Clark, and D. J. McGeoch. 1989. Gene UL11 of herpes simplex virus type 1 encodes a virion protein which is myristylated. J. Gen. Virol. 70:3147-3157.
25. MacLean, C. A., A. Dolan, F. E. Jamieson, and D. J. McGeoch. 1992. The myristylated virion proteins of herpes simplex virus type 1: investigation of their role in the virus life cycle. J. Gen. Virol. 73:539-547.
26. Maguire, H. F., and R. W. Hyman. 1986. Polyadenylated, cytoplasmic transcripts of varicella-zoster virus. Intervirology 26:181-191.
27. McMillan, D. J., J. Kay, and J. S. Mills. 1997. Characterization of the proteinase specified by varicella-zoster virus gene 33. J. Gen. Virol. 78:2153-2157.
28. Mitchell, B. M., D. C. Bloom, R. J. Cohrs, D. H. Gilden, and P. G. Kennedy. 2003. Herpes simplex virus type 1 and varicella-zoster virus latency in ganglia. J. Neurovirol. 9:194-204.
29. + T lymphocytes and epidermal cells in SCID-hu mice. J. Virol. 69:5236-5242.
30. Moffat, J. F., L. Zerboni, M. H. Sommer, T. C. Heineman, J. I. Cohen, H. Kaneshima, and A. M. Arvin. 1998. The ORF47 and ORF66 putative protein kinases of varicella-zoster virus determine tropism for human T cells and skin in the SCID-hu mouse. Proc. Natl. Acad. Sci. 95:11969-11974.
31. Nagpal, S., and J. M. Ostrove. 1991. Characterization of a potent varicella-zoster virus-encoded trans-repressor. J. Virol. 65:5289-5296.
32. Ostrove, J. M., W. Reinhold, C. M. Fan, S. Zorn, J. Hay, and S. E. Straus. 1985. Transcription mapping of the varicella-zoster virus genome. J. Virol. 56:600-606.
33. Preston, V. G., J. Kennard, F. J. Rixon, A. J. Logan, R. W. Mansfield, and I. M. McDougall. 1997. Efficient herpes simplex virus type 1 (herpes simplex virus type 1) capsid formation directed by the varicella-zoster virus scaffolding protein requires the carboxy-terminal sequences from the herpes simplex virus type 1 homologue. J. Gen. Virol. 78:1633-1646.
34. Reddy, S. M., M. Williams, and J. I. Cohen. 1998. Expression of a uracil DNA glycosylase (UNG) inhibitor in mammalian cells: varicella-zoster virus can replicate in vitro in the absence of detectable UNG activity. Virology 251:393-401.
35. Reinhold, W. C., S. E. Straus, and J. M. Ostrove. 1988. Directionality and further mapping of varicella zoster virus transcripts. Virus Res. 9:249-261.
36. Roller, R. J., and B. Roizman. 1994. A herpes simplex virus 1 US11-expressing cell line is resistant to herpes simplex virus infection at a step in viral entry mediated by glycoprotein D. J. Virol. 68:2830-2839.
37. Ross-Macdonald, P., P. S. Coelho, T. Roemer, S. Agarwal, A. Kumar, R. Jansen, K. H. Cheung, A. Sheehan, D. Symoniatis, L. Umansky, M. Heidtman, F. K. Nelson, H. Iwasaki, K. Hager, M. Gerstein, P. Miller, G. S. Roeder, and M. Snyder. 1999. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature 402:413-418.
38. Ross, J., M. Williams, and J. I. Cohen. 1997. Disruption of the varicella-zoster virus dUTPase and the adjacent ORF9A gene results in impaired growth and reduced syncytia formation in vitro. Virology 234:186-195.
39. Sciortino, M. T., M. Suzuki, B. Taddeo, and B. Roizman. 2001. RNAs extracted from herpes simplex virus 1 virions: apparent selectivity of viral but not cellular RNAs packaged in virions. J. Virol. 75:8105-8116.
40. Shenkar, R., J. P. Elliott, K. Diener, J. Gault, L. J. Hu, R. J. Cohrs, T. Phang, L. Hunter, R. E. Breeze, and I. A. Awad. 2003. Differential gene expression in human cerebrovascular malformations. Neurosurgery 52:465-478.
41. Sommer, M. H., E. Zagha, O. K. Serrano, C. C. Ku, L. Zerboni, A. Baiker, R. Santos, M. Spengler, J. Lynch, C. Grose, W. Ruyechan, J. Hay, and A. M. Arvin. 2001. Mutational analysis of the repeated open reading frames ORFs 63 and 70 and ORFs 64 and 69 of varicella-zoster virus. J. Virol. 75:8224-8239.
42. Spengler, M., N. Niesen, C. Grose, W. T. Ruyechan, and J. Hay. 2001. Interactions among structural proteins of varicella zoster virus. Arch. Virol. 2001(Suppl.):71-79.
43. Stingley, S. W., J. J. Ramirez, S. A. Aguilar, K. Simmen, R. M. Sandri-Goldin, P. Ghazal, and E. K. Wagner. 2000. Global analysis of herpes simplex virus type 1 transcription with an oligonucleotide-based DNA microarray. J. Virol. 74:9916-9927.
44. Straus, S. E., H. S. Aulakh, W. T. Ruyechan, J. Hay, T. A. Casey, G. F. Vande Woude, J. Owens, and H. A. Smith. 1981. Structure of varicella-zoster virus DNA. J. Virol. 40:516-525.
45. Van Gelder, R. N., M. E. von Zastrow, A. Yool, W. C. Dement, J. D. Barchas, and J. H. Eberwine. 1990. Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc. Natl. Acad. Sci. 87:1663-1667.
46. Yamada, H., T. Daikoku, Y. Yamashita, Y. M. Jiang, T. Tsurumi, and Y. Nishiyama. 1997. The product of the US10 gene of herpes simplex virus type 1 is a capsid/tegument-associated phosphoprotein which copurifies with the nuclear matrix. J. Gen. Virol. 78:2923-2931.