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Volumn 30, Issue 4, 2010, Pages 664-672

High incidence of cryptic repeated elements in microsatellite flanking regions of galatheid genomes and its practical implications for molecular marker development

Author keywords

Galatheidae; microsatellites; mobile elements; squat lobsters

Indexed keywords

ANOMURA; CRUSTACEA; DECAPODA (CRUSTACEA); GALATHEA STRIGOSA; GALATHEIDAE; MUNIDA RUGOSA;

EID: 78449278688     PISSN: 02780372     EISSN: None     Source Type: Journal    
DOI: 10.1651/09-3252.1     Document Type: Article
Times cited : (13)

References (52)
  • 1
    • 0029328427 scopus 로고
    • Porcine SINE associated microsatellite markers: Evidence for the new artiodactyls SINEs
    • Alexander, L. J., G. A. Rohrer, R. T. Stone, and C. W. Beattie. 1995. Porcine SINE associated microsatellite markers: evidence for the new artiodactyls SINEs. Mammalian Genome 6:464-468.
    • (1995) Mammalian Genome , vol.6 , pp. 464-468
    • Alexander, L.J.1    Rohrer, G.A.2    Stone, R.T.3    Beattie, C.W.4
  • 3
    • 34248231784 scopus 로고    scopus 로고
    • Repetitive flanking sequences (ReFS): Novel molecular markers from microsatellite families
    • Anderson, S. J., P. Gould, and J. R. Freeland. 2007. Repetitive flanking sequences (ReFS): novel molecular markers from microsatellite families. Molecular Ecology Notes 7:374-376.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 374-376
    • Anderson, S.J.1    Gould, P.2    Freeland, J.R.3
  • 4
    • 0029121722 scopus 로고
    • Alu repeats: A source for the genesis of primate microsatellites
    • Arcot, S. S., Z. Wang, J. L. Weber, P. L. Deninger, and M. A. Batzer. 1995. Alu repeats: A source for the genesis of primate microsatellites. Genomics 29:136-144.
    • (1995) Genomics , vol.29 , pp. 136-144
    • Arcot, S.S.1    Wang, Z.2    Weber, J.L.3    Deninger, P.L.4    Batzer, M.A.5
  • 6
    • 0042876803 scopus 로고    scopus 로고
    • Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers
    • Ball, A. O., and R. W. Chapman. 2003. Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers. Molecular Ecology 12:2319-2330.
    • (2003) Molecular Ecology , vol.12 , pp. 2319-2330
    • Ball, A.O.1    Chapman, R.W.2
  • 7
    • 50049099459 scopus 로고    scopus 로고
    • Population structure of Dungeness crab (Cancer magister) in British Colombia
    • Beacham, T. D., J. Supernault, and K. M. Miller. 2008. Population structure of Dungeness crab (Cancer magister) in British Colombia. Journal of Shellfish Research 27:901-906.
    • (2008) Journal of Shellfish Research , vol.27 , pp. 901-906
    • Beacham, T.D.1    Supernault, J.2    Miller, K.M.3
  • 9
    • 70350554243 scopus 로고    scopus 로고
    • Development and characterisation of 11 polymorphic compound tetranucleotide microsatellite loci for the Leisler's bat, Nyctalus leisleri (Vespertilionidae, Chiroptera)
    • Boston, E. S. M., I. Montgomery, and P. A. Prodöhl. 2009. Development and characterisation of 11 polymorphic compound tetranucleotide microsatellite loci for the Leisler's bat, Nyctalus leisleri (Vespertilionidae, Chiroptera). Conservation Genetics 10:1501-1504.
    • (2009) Conservation Genetics , vol.10 , pp. 1501-1504
    • Boston, E.S.M.1    Montgomery, I.2    Prodöhl, P.A.3
  • 10
    • 0034001626 scopus 로고    scopus 로고
    • Population structure of the giant tiger prawn Penaeus monodon in Australian waters, determined using the microsatellite markers
    • Brooker, A. L., J. A. H. Benzie, D. Blair, and J-J. Versini. 2000. Population structure of the giant tiger prawn Penaeus monodon in Australian waters, determined using the microsatellite markers. Marine Biology 136:149-157.
    • (2000) Marine Biology , vol.136 , pp. 149-157
    • Brooker, A.L.1    Benzie, J.A.H.2    Blair, D.3    Versini, J.-J.4
  • 12
    • 67349246068 scopus 로고    scopus 로고
    • Development and characterisation of microsatellite markers for the endangered anchialine squat lobster Munidopsis polymorhpa
    • Cabezas, P., P. Bloor, I. Acevedo, C. Toledo, M. Calvo, E. Macpherson, and A. Machordom. 2009. Development and characterisation of microsatellite markers for the endangered anchialine squat lobster Munidopsis polymorhpa. Conservation Genetics 10:673-676.
    • (2009) Conservation Genetics , vol.10 , pp. 673-676
    • Cabezas, P.1    Bloor, P.2    Acevedo, I.3    Toledo, C.4    Calvo, M.5    Macpherson, E.6    Machordom, A.7
  • 14
    • 0003711520 scopus 로고
    • Ordines, Genera, Species, adjectis Sysnonymis, Locis, Descriptionibus, Observationibus, Kortii, Flensburgi et Lipsiae
    • Fabricius, J. C. 1775 Systema Entomologiae, sistens Insectorum Classes, Ordines, Genera, Species, adjectis Sysnonymis, Locis, Descriptionibus, Observationibus, pp. 832. Kortii, Flensburgi et Lipsiae.
    • (1775) Systema Entomologiae, Sistens Insectorum Classes , pp. 832
    • Fabricius, J.C.1
  • 17
    • 11944262609 scopus 로고    scopus 로고
    • The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF
    • Halaimia-Toumi, N., N. Casse, M. Demattei, S. Renault, E. Pradier, Y. Bigot, and M. Laulier 2004. The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF. Journal of Molecular Evolution 59:747-760.
    • (2004) Journal of Molecular Evolution , vol.59 , pp. 747-760
    • Halaimia-Toumi, N.1    Casse, N.2    Demattei, M.3    Renault, S.4    Pradier, E.5    Bigot, Y.6    Laulier, M.7
  • 19
    • 34548163098 scopus 로고    scopus 로고
    • IRAP and REMAP for retrotransposon-based genotyping and fingerprinting
    • Kalendar, R., and H. A. Schulman. 2006. IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nature Protocols 1:2478-2484.
    • (2006) Nature Protocols , vol.1 , pp. 2478-2484
    • Kalendar, R.1    Schulman, H.A.2
  • 20
    • 63849254923 scopus 로고    scopus 로고
    • Pleistocene glaciation events shape genetic structure across the range of the American lobster, Homarus americanus
    • Kenchington, E. L., G. C. Harding, M. W. Jones, and P. A. Prodöhl. 2009. Pleistocene glaciation events shape genetic structure across the range of the American lobster, Homarus americanus. Molecular Ecology 18:1654-1667.
    • (2009) Molecular Ecology , vol.18 , pp. 1654-1667
    • Kenchington, E.L.1    Harding, G.C.2    Jones, M.W.3    Prodöhl, P.A.4
  • 21
    • 0036756498 scopus 로고    scopus 로고
    • Isolation of novel microsatellite loci in the Rocky Mountain apollo butterfly, Parnassius smintheus
    • Keyghobadi, N., J. Roland, and C. Strobeck. 2002. Isolation of novel microsatellite loci in the Rocky Mountain apollo butterfly, Parnassius smintheus. Hereditas 136:247-250.
    • (2002) Hereditas , vol.136 , pp. 247-250
    • Keyghobadi, N.1    Roland, J.2    Strobeck, C.3
  • 22
    • 0028026319 scopus 로고
    • Enrichment of microsatellites from citrus genome using biotynilated oligonucleotide sequences bound to streptavidin-coated magnetic particles
    • Kijas, J. M. H., J. C. S. Fowler, C. A. Garbett, and M. R. Thomas. 1994. Enrichment of microsatellites from citrus genome using biotynilated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques 16:657-662.
    • (1994) Biotechniques , vol.16 , pp. 657-662
    • Kijas, J.M.H.1    Fowler, J.C.S.2    Garbett, C.A.3    Thomas, M.R.4
  • 23
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: Repbase-submitter and censor
    • Kohany, O., A. J. Gentles, L. Hankus, and J. Jurkas. 2006. Annotation, submission and screening of repetitive elements in Repbase: Repbase-Submitter and Censor. BMC Bioinformatics 25:474.
    • (2006) BMC Bioinformatics , vol.25 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurkas, J.4
  • 24
    • 0003805702 scopus 로고
    • Distributa per Classes, Ordines, Genera, Species, cum Differentiis Specierum, Synonymis Auctorum, Nominibus Incolarum, Locis Natalium, Descriptionibus Insectorum
    • Linnaeus, C. 1761. Fauna Suecica sistens Animalia Sueciae Regni: Mammalia, Aves, Amphibia, Pisces, Insecta, Vermes. Distributa per Classes, Ordines, Genera, Species, cum Differentiis Specierum, Synonymis Auctorum, Nominibus Incolarum, pp. 578. Locis Natalium, Descriptionibus Insectorum.
    • (1761) Fauna Suecica Sistens Animalia Sueciae Regni: Mammalia, Aves, Amphibia, Pisces, Insecta, Vermes , pp. 578
    • Linnaeus, C.1
  • 25
    • 70350555516 scopus 로고    scopus 로고
    • Characterisation of polymorphic microsatellites for the periwinkle gastropod, Littorina littorea (Linnaeus, 1758) and their cross-species amplification in four congeners
    • McInerney, C. E., A. L. Allcock, M. P. Johnston, and P. A. Prodöhl. 2008. Characterisation of polymorphic microsatellites for the periwinkle gastropod, Littorina littorea (Linnaeus, 1758) and their cross-species amplification in four congeners. Conservation Genetics 10:1417-1420.
    • (2008) Conservation Genetics , vol.10 , pp. 1417-1420
    • McInerney, C.E.1    Allcock, A.L.2    Johnston, M.P.3    Prodöhl, P.A.4
  • 26
    • 71349083478 scopus 로고    scopus 로고
    • Characterization of polymorphic microsatellite loci for the rough periwinkle gastropod Littorina saxatilis (Olivi, 1972) and their conservation in four congeners
    • -, -, -, and -. 2009. Characterization of polymorphic microsatellite loci for the rough periwinkle gastropod Littorina saxatilis (Olivi, 1972) and their conservation in four congeners. Conservation Genetics 10:1989-1992.
    • (2009) Conservation Genetics , vol.10 , pp. 1989-1992
  • 28
    • 0031833072 scopus 로고    scopus 로고
    • Microsatellite loci for Parnassius mnemosyne (Lepidoptera)
    • Meglécz, E., and M. Solignac. 1998. Microsatellite loci for Parnassius mnemosyne (Lepidoptera). Hereditas 128:179-180.
    • (1998) Hereditas , vol.128 , pp. 179-180
    • Meglécz, E.1    Solignac, M.2
  • 29
    • 2542465217 scopus 로고    scopus 로고
    • High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia
    • -, F. Petanian, E. Danchin, A. Coeur D'acier, J. Rasplus, and E. Faure. 2004. High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia. Molecular Ecology 13:1693-1700.
    • (2004) Molecular Ecology , vol.13 , pp. 1693-1700
    • Petanian, F.1    Danchin, E.2    D'acier, C.A.3    Rasplus, J.4    Faure, E.5
  • 32
    • 0033616743 scopus 로고    scopus 로고
    • The development and application of genetic markers for the Kumura prawn Penaeus japonicus
    • Moore, S. S., V. Whan, G. P. Davis, K. Byrne, D. J. Z. Hetzel, and N. Preston. 1999. The development and application of genetic markers for the Kumura prawn Penaeus japonicus. Aquaculture 173:19-32.
    • (1999) Aquaculture , vol.173 , pp. 19-32
    • Moore, S.S.1    Whan, V.2    Davis, G.P.3    Byrne, K.4    Hetzel, D.J.Z.5    Preston, N.6
  • 34
    • 0029555926 scopus 로고
    • Developing microsatellite markers for insect population structure: Complex variation in a checker spot butterfly
    • Palo, J., S-L. Varvio, I. Hanski, and R. Väinölä. 1995. Developing microsatellite markers for insect population structure: complex variation in a checker spot butterfly. Hereditas 123:295-300.
    • (1995) Hereditas , vol.123 , pp. 295-300
    • Palo, J.1    Varvio, S.-L.2    Hanski, I.3    Väinölä, R.4
  • 35
    • 66149120200 scopus 로고    scopus 로고
    • DIRS1-like retrotransposons are widely distributed among Decapoda and are particularly present in hydrothermal vent organisms
    • Piednoel, M., and E. Bonnivard. 2009. DIRS1-like retrotransposons are widely distributed among Decapoda and are particularly present in hydrothermal vent organisms. Evolutionary Biology 9:86.
    • (2009) Evolutionary Biology , vol.9 , pp. 86
    • Piednoel, M.1    Bonnivard, E.2
  • 36
    • 30844448981 scopus 로고    scopus 로고
    • In silico characterization of microsatellites in Eucalyptus spp: Abundance, length variation and transposon associations
    • Rabello, E., A. Nunes de Souza, D. Saito, and S. Mui Tsai. 2005. In silico characterization of microsatellites in Eucalyptus spp: Abundance, length variation and transposon associations. Genetics and Molecular Biology 28:582-588.
    • (2005) Genetics and Molecular Biology , vol.28 , pp. 582-588
    • Rabello, E.1    Nunes De Souza, A.2    Saito, D.3    Tsai, S.M.4
  • 37
    • 0033084050 scopus 로고    scopus 로고
    • Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley
    • Ramsey, L., M. Macauley, L. Cardie, M. Morgante, S. Ivanissech, E. Maestri, W. Powell, and R. Waugh. 1999. Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. The Plant Journal 17:415-425.
    • (1999) The Plant Journal , vol.17 , pp. 415-425
    • Ramsey, L.1    Macauley, M.2    Cardie, L.3    Morgante, M.4    Ivanissech, S.5    Maestri, E.6    Powell, W.7    Waugh, R.8
  • 40
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlötterer, C., and D. Tautz. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acid Research 20:211-215.
    • (1992) Nucleic Acid Research , vol.20 , pp. 211-215
    • Schlötterer, C.1    Tautz, D.2
  • 41
    • 2542424855 scopus 로고    scopus 로고
    • The application of LTR retrotransposons as molecular markers in plants
    • Schulman, A. H., A. J. Flavell, and T. H. Ellis. 2004. The application of LTR retrotransposons as molecular markers in plants. Methods of Molecular Biology 260:145-173.
    • (2004) Methods of Molecular Biology , vol.260 , pp. 145-173
    • Schulman, A.H.1    Flavell, A.J.2    Ellis, T.H.3
  • 42
    • 33645894192 scopus 로고    scopus 로고
    • Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers
    • Selkoe, K. A., and R. J. Toonen. 2006. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology letters 9:615-629.
    • (2006) Ecology Letters , vol.9 , pp. 615-629
    • Selkoe, K.A.1    Toonen, R.J.2
  • 43
    • 6544274836 scopus 로고    scopus 로고
    • Microsatellite markers for the onychophoran Euperipatoides rowelli
    • Sunnucks, P., and A. C. C. Wilson. 1999. Microsatellite markers for the onychophoran Euperipatoides rowelli. Molecular Ecology 8:899-900.
    • (1999) Molecular Ecology , vol.8 , pp. 899-900
    • Sunnucks, P.1    Wilson, A.C.C.2
  • 44
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • Temnykh, S., G. DeClerk, A. Lukashova, L. Lipovich, S. Cartinhour, and S. McCouch. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Research 11:1441-1452.
    • (2001) Genome Research , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerk, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 45
    • 36949010080 scopus 로고    scopus 로고
    • GalEa retrotransposons from galatheid squat lobsters (Decapoda, Anomura) define a new clade of Ty1/copia-like elements restricted to aquatic species
    • Terrat, Y., E. Bonnivard, and D. Higuet. 2008. GalEa retrotransposons from galatheid squat lobsters (Decapoda, Anomura) define a new clade of Ty1/copia-like elements restricted to aquatic species. Molecular Genetics and Genomics 279:63-73.
    • (2008) Molecular Genetics and Genomics , vol.279 , pp. 63-73
    • Terrat, Y.1    Bonnivard, E.2    Higuet, D.3
  • 46
    • 34247620233 scopus 로고    scopus 로고
    • Evolutionary dynamics of multilocus arrangements in the genome of the butterfly Bicyclus anyana, with implications for Lepidoptera
    • Van't Hof, A. E., P. M. Brakefield, I. J. Saccheri, and B. J. Zwaan. 2007. Evolutionary dynamics of multilocus arrangements in the genome of the butterfly Bicyclus anyana, with implications for Lepidoptera. Heredity 98:320-328.
    • (2007) Heredity , vol.98 , pp. 320-328
    • Hof, V.A.E.1    Brakefield, P.M.2    Saccheri, I.J.3    Zwaan, B.J.4
  • 47
    • 33947536225 scopus 로고    scopus 로고
    • Hierarchical population genetic structure in the commercially exploited shrimp Crangon crangon identified by AFLP analysis
    • Weetman, D., A. Ruggiero, S. Mariani, P. W. Shaw, A. R. Lawler, and L. Hauser. 2007. Hierarchical population genetic structure in the commercially exploited shrimp Crangon crangon identified by AFLP analysis. Marine Biology 151:565-575.
    • (2007) Marine Biology , vol.151 , pp. 565-575
    • Weetman, D.1    Ruggiero, A.2    Mariani, S.3    Shaw, P.W.4    Lawler, A.R.5    Hauser, L.6
  • 49
    • 0035100172 scopus 로고    scopus 로고
    • Mobile elements and the genesis of microsatellites in dipterans
    • Wilder, J., and H. Hollocher. 2001. Mobile elements and the genesis of microsatellites in dipterans. Molecular Biology and Evolution 18:384-392.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 384-392
    • Wilder, J.1    Hollocher, H.2
  • 50
    • 0033136752 scopus 로고    scopus 로고
    • Isolation of microsatellite markers in Astatoreochromas alluaudi and their cross-species amplifications on other African cichlids
    • Wu, L., L. Kaufman, and P. A. Fuerst. 1999. Isolation of microsatellite markers in Astatoreochromas alluaudi and their cross-species amplifications on other African cichlids. Molecular Ecology 8:895-897.
    • (1999) Molecular Ecology , vol.8 , pp. 895-897
    • Wu, L.1    Kaufman, L.2    Fuerst, P.A.3
  • 51
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • Zane, L., L. Bargelloni, and T. Patarnello. 2002. Strategies for microsatellite isolation: a review. Molecular Ecology 11:1-16.
    • (2002) Molecular Ecology , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 52
    • 4544313277 scopus 로고    scopus 로고
    • Lepidopteran microsatellite DNA: Redundant but promising
    • Zhang, D. 2004 Lepidopteran microsatellite DNA: redundant but promising. Trends in Ecology and Evolution 19:507-509.
    • (2004) Trends in Ecology and Evolution , vol.19 , pp. 507-509
    • Zhang, D.1


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