Structural and dynamic properties of linker histone H1 binding to DNA

Biomicrofluidics

Volumn 5, Issue 2, 2011, Pages

  Dootz, Rolf ^a   Toma, Adriana C ^b   Pfohl, Thomas ^a,b  

^a MAX PLANCK INSTITUTE FOR DYNAMICS AND SELF ORGANIZATION   (Germany)

^b UNIVERSITY OF BASEL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

MICROFLUIDICS; PROTEINS; SELF ASSEMBLY; X RAY DIFFRACTION;

CORRELATION LENGTHS; HYDRODYNAMIC FOCUSING; RESEARCH COMMUNITIES; SELF ASSEMBLY PROCESS; STRUCTURAL AND DYNAMIC PROPERTIES; STRUCTURE FORMATIONS; TIME-DEPENDENT STRUCTURE; TRANSIENT INTERMEDIATE;

DNA;

EUKARYOTA;

EID: 79959865293     PISSN: 19321058     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3587096     Document Type: Article

References (50)

1. Neelin J.M. Callahan P.X. Lamb D.C. Murray K. Can. J. Biochem. Physiol. 1964, 42:1743. CJBPAZ, 0576-5544, and.
2. Ausio J. J. Biol. Chem. 1999, 274:31115. JBCHA3, 0021-9258, 10.1074/jbc.274.44.31115.
3. Kasinsky H.E. Lewis J.D. Dacks J.B. Ausio J. FASEB J. 2001, 15:34. FAJOEC, 0892-6638, 10.1096/fj.00-0237rev, and.
4. Thomas J.O. Curr. Opin. Cell Biol. 1999, 11:312. COCBE3, 0955-0674, 10.1016/S0955-0674(99)80042-8.
5. Wolffe A.P. Khochbin S. Dimitrov S. BioEssays 1997, 19:249. BIOEEJ, 0265-9247, 10.1002/bies.950190311, and.
6. Allan J. Hartman P.G. Crane-Robinson C. Aviles F.X. Nature (London) 1980, 288:675. NATUAS, 0028-0836, 10.1038/288675a0, and.
7. Ramakrishnan V. Finch J.T. Graziano V. Lee P.L. Sweet R.M. Nature (London) 1993, 362:219. NATUAS, 0028-0836, 10.1038/362219a0, and.
8. Goytisolo F.A. Gerchman S.E. Yu X. Rees C. Graziano V. Ramakrishnan V. Thomas J.O. EMBO J. 1996, 15:3421. EMJODG, 0261-4189, and.
9. Stasevich T.J. Mueller F. Brown D.T. McNally J.G. EMBO J. 2010, 29:1225. EMJODG, 0261-4189, 10.1038/emboj.2010.24, and.
10. Subirana J.A. Biopolymers 1990, 29:1351. BIPMAA, 0006-3525, 10.1002/bip.360291003.
11. Allan J. Mitchell T. Harborne N. Bohm L. Crane-Robinson C. J. Mol. Biol. 1986, 187:591. JMOBAK, 0022-2836, 10.1016/0022-2836(86)90337-2, and.
12. Misteli T. Gunjan A. Hock R. Bustin M. Brown D.T. Nature (London) 2000, 408:877. NATUAS, 0028-0836, 10.1038/35048610, and.
13. van Holde K.E. Chromatin 1989, (Springer, New York, ).
14. Hansen J.C. Ausio J. Trends Biochem. Sci. 1992, 17:187. TBSCDB, 0167-7640, 10.1016/0968-0004(92)90264-A, and.
15. Widom J. Annu. Rev. Biophys. Biomol. Struct. 1998, 27:285. ABBSE4, 1056-8700, 10.1146/annurev.biophys.27.1.285.
16. Hashimoto H. Takami Y. Sonoda E. Iwasaki T. Iwano H. Tachibana M. Takeda S. Nakayama T. Kimura H. Shinkai Y. Nucleic Acids Res. 2010, 38:3533. NARHAD, 0305-1048, 10.1093/nar/gkq076, and.
17. Widom J. Curr. Biol. 1998, 8:R788. CUBLE2, 0960-9822, 10.1016/S0960-9822(07)00500-3.
18. Ellen T.P. van Holde K.E. Biochemistry 2004, 43:7867. BICHAW, 0006-2960, 10.1021/bi0497704, and.
19. Krylov D. Leuba S. van Holde K. Zlatanova J. Proc. Natl. Acad. Sci. U.S.A. 1993, 90:5052. PNASA6, 0027-8424, 10.1073/pnas.90.11.5052, and.
20. Varga-Weisz P. Zlatanova J. Leuba S.H. Schroth G.P. van Holde K. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:3525. PNASA6, 0027-8424, 10.1073/pnas.91.9.3525, and.
21. Böttger M. Mickwitz C.-U. Scherneck S. Lindigkeit R. Mol. Biol. Rep. 1984, 10:3. MLBRBU, 0301-4851, 10.1007/BF00775146, and.
22. Watanabe F. Nucleic Acids Res. 1986, 14:3573. NARHAD, 0305-1048, 10.1093/nar/14.8.3573.
23. Widom J. J. Mol. Biol. 1986, 190:411. JMOBAK, 0022-2836, 10.1016/0022-2836(86)90012-4.
24. Clark D.J. Kimura T. J. Mol. Biol. 1990, 211:883. JMOBAK, 0022-2836, 10.1016/0022-2836(90)90081-V, and.
25. Yoshikawa Y. Nomura S.M. Kanbe T. Yoshikawa K. Chem. Phys. Lett. 2000, 330:77. CHPLBC, 0009-2614, 10.1016/S0009-2614(00)01075-7, and.
26. Toma A.C. de Frutos M. Livolant F. Raspaud E. Biomacromolecules 2009, 10:2129. BOMAF6, 1525-7797, 10.1021/bm900275s, and.
27. de Nooij E.H. Westenbrink H.G. K. Biochim. Biophys. Acta 1962, 62:608. BBACAQ, 0006-3002, 10.1016/0006-3002(62)90254-8, and.
28. Otten A. Koster S. Struth B. Snigirev A. Pfohl T. J. Synchrotron Radiat. 2005, 12:745. JSYRES, 0909-0495, 10.1107/S0909049505013580, and.
29. Mukhopadhyay S. Maitra U. Ira I. Krishnamoorthy G. Schmidt J. Talmon Y. J. Am. Chem. Soc. 2004, 126:15905. JACSAT, 0002-7863, 10.1021/ja046788t, and.
30. Ravelli R.B. McSweeney S.M. Structure 2000, 8:315. 10.1016/S0969-2126(00)00109-X, 0969-2126, and.
31. Evans H.M. Ahmad A. Ewert K. Pfohl T. Martin-Herranz A. Bruinsma R.F. Safinya C.R. Phys. Rev. Lett. 2003, 91:075501. PRLTAO, 0031-9007, 10.1103/PhysRevLett.91.075501, and.
32. Liu Y.C. Chen H.L. Su C.J. Lin H.K. Liu W.L. Jeng U.S. Macromolecules 2005, 38:9434. MAMOBX, 0024-9297, 10.1021/ma0513620, and.
33. Köster S. Steinhauser D. Pfohl T. J. Phys.: Condens. Matter 2005, 17:S4091. JCOMEL, 0953-8984, 10.1088/0953-8984/17/49/006, and.
34. DeRouchey J. Netz R.R. Radler J.O. Eur. Phys. J. E 2005, 16:17. EPJSFH, 1292-8941, 10.1140/epje/e2005-00003-4, and.
35. Dootz R. Otten A. Koster S. Struth B. Pfohl T. J. Phys.: Condens. Matter 2006, 18:S639. JCOMEL, 0953-8984, 10.1088/0953-8984/18/18/S10, and.
36. Pfohl T. Otten A. Koster S. Dootz R. Struth B. Evans H.M. Biomacromolecules 2007, 8:2167. BOMAF6, 1525-7797, 10.1021/bm070317s, and.
37. Draves P.H. Lowary P.T. Widom J. J. Mol. Biol. 1992, 225:1105. JMOBAK, 0022-2836, 10.1016/0022-2836(92)90108-V, and.
38. Thomas J.O. Rees C. Finch J.T. Nucleic Acids Res. 1992, 20:187. NARHAD, 0305-1048, 10.1093/nar/20.2.187, and.
39. Su C.J. Chen H.L. Wei M.C. Peng S.F. Sung H.W. Ivanov V.A. Biomacromolecules 2009, 10:773. BOMAF6, 1525-7797, 10.1021/bm801246e, and.
40. Saminathan M. Thomas T. Shirahata A. Pillai C.K. S. Thomas T.J. Nucleic Acids Res. 2002, 30:3722. NARHAD, 0305-1048, 10.1093/nar/gkf503, and.
41. Roque A. Ponte I. Suau P. J. Phys. Chem. B 2009, 113:12061. JPCBFK, 1089-5647, 10.1021/jp9022579, and.
42. Mamoon N.M. Song Y.G. Wellman S.E. Biopolymers 2005, 77:9. BIPMAA, 0006-3525, 10.1002/bip.20172, and.
43. Schiessel H. J. Phys.: Condens. Matter 2003, 15:R699. JCOMEL, 0953-8984, 10.1088/0953-8984/15/19/203.
44. Bednar J. Horowitz R.A. Grigoryev S.A. Carruthers L.M. Hansen J.C. Koster A.J. Woodcock C.L. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:14173. PNASA6, 0027-8424, 10.1073/pnas.95.24.14173, and.
45. Zlatanova J. Seebart C. Tomschik M. Trends Biochem. Sci. 2008, 33:247. TBSCDB, 0167-7640, 10.1016/j.tibs.2008.04.001, and.
46. Cui F. Zhurkin V.B. Nucleic Acids Res. 2009, 37:2818. NARHAD, 0305-1048, 10.1093/nar/gkp113, and.
47. Syed S.H. Goutte-Gattat D. Becker N. Meyer S. Shukla M.S. Hayes J.J. Everaers R. Angelov D. Bednar J. Dimitrov S. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:9620. PNASA6, 0027-8424, 10.1073/pnas.1000309107, and.
48. Routh A. Sandin S. Rhodes D. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:8872. PNASA6, 0027-8424, 10.1073/pnas.0802336105, and.
49. Raspaud E. Durand D. Livolant F. Biophys. J. 2005, 88:392. BIOJAU, 0006-3495, 10.1529/biophysj.104.040113, and.
50. Yoshikawa Y. Velichko Y.S. Ichiba Y. Yoshikawa K. Eur. J. Biochem. 2001, 268:2593. EJBCAI, 0014-2956, 10.1046/j.1432-1327.2001.02144.x, and.