-
1
-
-
52649177737
-
The triple helix: 50 years later, the outcome
-
M. Duca, P. Vekhoff, K. Oussedik, L. Halby, and P.B. Arimondo The triple helix: 50 years later, the outcome Nucleic Acids Res. 36 2008 5123 5138
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5123-5138
-
-
Duca, M.1
Vekhoff, P.2
Oussedik, K.3
Halby, L.4
Arimondo, P.B.5
-
2
-
-
36148968944
-
A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription
-
DOI 10.1074/jbc.M704618200
-
B.P. Belotserkovskii, E. De Silva, S. Tornaletti, G. Wang, K.M. Vasquez, and P.C. Hanawalt A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription J. Biol. Chem. 282 2007 32433 32441 (Pubitemid 350106421)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.44
, pp. 32433-32441
-
-
Belotserkovskii, B.P.1
De Silva, E.2
Tornaletti, S.3
Wang, G.4
Vasquez, K.M.5
Hanawalt, P.C.6
-
3
-
-
0034635981
-
Targeted inhibition of transcription elongation in cells mediated by triplex-forming oligonucleotides
-
DOI 10.1073/pnas.97.8.3862
-
M. Faria, C.D. Wood, L. Perrouault, J.S. Nelson, A. Winter, M.R. White, C. Helene, and C. Giovannangeli Targeted inhibition of transcription elongation in cells mediated by triplex-forming oligonucleotides Proc. Natl. Acad. Sci. USA 97 2000 3862 3867 (Pubitemid 30226052)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.8
, pp. 3862-3867
-
-
Faria, M.1
Wood, C.D.2
Perrouault, L.3
Nelson, J.S.4
Winter, A.5
White, M.R.H.6
Helene, C.7
Giovannangeli, C.8
-
4
-
-
0023619361
-
Sequence-specific cleavage of double helical DNA by triple helix formation
-
H.E. Moser, and P.B. Dervan Sequence-specific cleavage of double helical DNA by triple helix formation Science 238 1987 645 650 (Pubitemid 17158294)
-
(1987)
Science
, vol.238
, Issue.4827
, pp. 645-650
-
-
Moser, H.E.1
Dervan, P.B.2
-
5
-
-
0029912788
-
Recombination induced by triple-helix-targeted DNA damage in mammalian cells
-
A.F. Faruqi, M.M. Seidman, D.J. Segal, D. Carroll, and P.M. Glazer Recombination induced by triple-helix-targeted DNA damage in mammalian cells Mol. Cell. Biol. 16 1996 6820 6828 (Pubitemid 26389741)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.12
, pp. 6820-6828
-
-
Faruqi, A.F.1
Seidman, M.M.2
Segal, D.J.3
Carroll, D.4
Glazer, P.M.5
-
6
-
-
0027419952
-
Inhibition of gene expression by triple helix-directed DNA cross-linking at specific sites
-
M. Grigoriev, D. Praseuth, A.L. Guieysse, P. Robin, N.T. Thuong, C. Helene, and A. Harel-Bellan Inhibition of gene expression by triple helix-directed DNA cross-linking at specific sites Proc. Natl. Acad. Sci. USA 90 1993 3501 3505 (Pubitemid 23111394)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.8
, pp. 3501-3505
-
-
Grigoriev, M.1
Praseuth, D.2
Guieysse, A.L.3
Robin, P.4
Thuong, N.T.5
Helene, C.6
Harel-Bellan, A.7
-
7
-
-
36849035750
-
Photoinduced crosslinking of double-helical DNA by psoralen covalently linked to a triple helix-forming oligonucleotide under near-physiological conditions
-
DOI 10.1080/15257770701508554, PII 787853608
-
H. Li, V.J. Broughton-Head, K.R. Fox, and T. Brown Photoinduced crosslinking of double-helical DNA by psoralen covalently linked to a triple helix-forming oligonucleotide under near-physiological conditions Nucleosides Nucleotides Nucleic Acids 26 2007 1005 1009 (Pubitemid 350223256)
-
(2007)
Nucleosides, Nucleotides and Nucleic Acids
, vol.26
, Issue.8-9
, pp. 1005-1009
-
-
Li, H.1
Broughton-Head, V.J.2
Fox, K.R.3
Brown, T.4
-
8
-
-
71049189144
-
Targeted gene conversion induced by triplex-directed psoralen interstrand crosslinks in mammalian cells
-
Y. Liu, R.S. Nairn, and K.M. Vasquez Targeted gene conversion induced by triplex-directed psoralen interstrand crosslinks in mammalian cells Nucleic Acids Res. 37 2009 6378 6388
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6378-6388
-
-
Liu, Y.1
Nairn, R.S.2
Vasquez, K.M.3
-
9
-
-
0042691476
-
COMBO-FISH: Specific labeling of nondenatured chromatin targets by computer-selected DNA oligonucleotide probe combinations
-
M. Hausmann, R. Winkler, G. Hildenbrand, J. Finsterle, A. Weisel, A. Rapp, E. Schmitt, S. Janz, and C. Cremer COMBO-FISH: specific labeling of nondenatured chromatin targets by computer-selected DNA oligonucleotide probe combinations BioTechniques 35 2003 564 577 (Pubitemid 37108258)
-
(2003)
BioTechniques
, vol.35
, Issue.3
, pp. 564-577
-
-
Hausmann, M.1
Winkler, R.2
Hildenbrand, G.3
Finsterle, J.4
Weisel, A.5
Rapp, A.6
Schmitt, E.7
Janz, S.8
Cremer, C.9
-
10
-
-
33645523606
-
Novel GC-rich DNA-binding compound produced by a genetically engineered mutant of the mithramycin producer Streptomyces argillaceus exhibits improved transcriptional repressor activity: Implications for cancer therapy
-
V. Albertini, A. Jain, S. Vignati, S. Napoli, A. Rinaldi, I. Kwee, M. Nur-e-Alam, J. Bergant, F. Bertoni, G.M. Carbone, J. Rohr, and C.V. Catapano Novel GC-rich DNA-binding compound produced by a genetically engineered mutant of the mithramycin producer Streptomyces argillaceus exhibits improved transcriptional repressor activity: implications for cancer therapy Nucleic Acids Res. 34 2006 1721 1734
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1721-1734
-
-
Albertini, V.1
Jain, A.2
Vignati, S.3
Napoli, S.4
Rinaldi, A.5
Kwee, I.6
Nur-E-Alam, M.7
Bergant, J.8
Bertoni, F.9
Carbone, G.M.10
Rohr, J.11
Catapano, C.V.12
-
11
-
-
0032874955
-
Correction of chromosomal point mutations in human cells with bifunctional oligonucleotides
-
DOI 10.1038/13684
-
K.W. Culver, W.T. Hsieh, Y. Huyen, V. Chen, J. Liu, Y. Khripine, and A. Khorlin Correction of chromosomal point mutations in human cells with bifunctional oligonucleotides Nat. Biotechnol. 17 1999 989 993 (Pubitemid 29474855)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 989-993
-
-
Culver, K.W.1
Hsieh, W.-T.2
Huyen, Y.3
Chen, V.4
Liu, J.5
Khripine, Y.6
Khorlin, A.7
-
12
-
-
0033766239
-
Specific mutations induced by triplex-forming oligonucleotides in mice
-
K.M. Vasquez, L. Narayanan, and P.M. Glazer Specific mutations induced by triplex-forming oligonucleotides in mice Science 290 2000 530 533
-
(2000)
Science
, vol.290
, pp. 530-533
-
-
Vasquez, K.M.1
Narayanan, L.2
Glazer, P.M.3
-
13
-
-
47649084520
-
DNA triple helices: Biological consequences and therapeutic potential
-
A. Jain, G. Wang, and K.M. Vasquez DNA triple helices: biological consequences and therapeutic potential Biochimie 90 2008 1117 1130
-
(2008)
Biochimie
, vol.90
, pp. 1117-1130
-
-
Jain, A.1
Wang, G.2
Vasquez, K.M.3
-
14
-
-
0029901452
-
Triplex formation by oligonucleotides containing novel deoxycytidine derivatives
-
DOI 10.1093/nar/24.13.2606
-
C.Y. Huang, G. Bi, and P.S. Miller Triplex formation by oligonucleotides containing novel deoxycytidine derivatives Nucleic Acids Res. 24 1996 2606 2613 (Pubitemid 26237162)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.13
, pp. 2606-2613
-
-
Huang, C.-Y.1
Bi, G.2
Miller, P.S.3
-
15
-
-
1542331584
-
Synthesis and duplex DNA recognition studies of oligonucleotides containing a ureido isoindolin-1-one homo-N-nucleoside. A comparison of host-guest and DNA recognition studies
-
DOI 10.1016/j.bmc.2003.12.022, PII S0968089603008836
-
E. Mertz, S. Mattei, and S.C. Zimmerman Synthesis and duplex DNA recognition studies of oligonucleotides containing a ureido isoindolin-1-one homo-N-nucleoside: a comparison of host-guest and DNA recognition studies Bioorg. Med. Chem. 12 2004 1517 1526 (Pubitemid 38296542)
-
(2004)
Bioorganic and Medicinal Chemistry
, vol.12
, Issue.6
, pp. 1517-1526
-
-
Mertz, E.1
Mattei, S.2
Zimmerman, S.C.3
-
16
-
-
19644390288
-
Four base recognition by triplex-forming oligonucleotides at physiological pH
-
DOI 10.1093/nar/gki625
-
D.A. Rusling, V.E.C. Powers, R.T. Ranasinghe, Y. Wang, S.D. Osborne, T. Brown, and K.R. Fox Four base recognition by triplex-forming oligonucleotides at physiological pH Nucleic Acids Res. 33 2005 3025 3032 (Pubitemid 41511240)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.9
, pp. 3025-3032
-
-
Rusling, D.A.1
Powers, V.E.C.2
Ranasinghe, R.T.3
Wang, Y.4
Osborne, S.D.5
Brown, T.6
Fox, K.R.7
-
17
-
-
36949008769
-
CG base pair recognition within DNA triple helices using N-methyl-3H-pyrrolo[2,3-d]pyrimidin-2(7H)-one nucleoside analogues
-
DOI 10.1080/15257770701533958, PII 788136732
-
S.R. Gerrard, N. Srinivasan, K.R. Fox, and T. Brown CG base pair recognition within DNA triple helices using N-methyl-3H-pyrrolo[2,3-d] pyrimidin-2(7H)-one nucleoside analogues Nucleosides Nucleotides Nucleic Acids 26 2007 1363 1367 (Pubitemid 350240708)
-
(2007)
Nucleosides, Nucleotides and Nucleic Acids
, vol.26
, Issue.10-12
, pp. 1363-1367
-
-
Gerrard, S.R.1
Srinivasan, N.2
Fox, K.R.3
Brown, T.4
-
18
-
-
34250679056
-
Locked nucleic acid oligonucleotides: The next generation of antisense agents?
-
DOI 10.2165/00063030-200721040-00004
-
A. Grunweller, and R.K. Hartmann Locked nucleic acid oligonucleotides: the next generation of antisense agents? BioDrugs 21 2007 235 243 (Pubitemid 47104979)
-
(2007)
BioDrugs
, vol.21
, Issue.4
, pp. 235-243
-
-
Grunweller, A.1
Hartmann, R.K.2
-
19
-
-
34547381047
-
LNA (locked nucleic acid) and analogs as triplex-forming oligonucleotides
-
DOI 10.1039/b706101c
-
T. Hojland, S. Kumar, B.R. Babu, T. Umemoto, N. Albaek, P.K. Sharma, P. Nielsen, and J. Wengel LNA (locked nucleic acid) and analogs as triplex-forming oligonucleotides Org. Biomol. Chem. 5 2007 2375 2379 (Pubitemid 47133392)
-
(2007)
Organic and Biomolecular Chemistry
, vol.5
, Issue.15
, pp. 2375-2379
-
-
Hojland, T.1
Kumar, S.2
Babu, B.R.3
Umemoto, T.4
Albaek, N.5
Sharma, P.K.6
Nielsen, P.7
Wengel, J.8
-
20
-
-
0035951767
-
2′-O,4′-C-Methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH: Thermodynamic and kinetic studies
-
H. Torigoe, Y. Hari, M. Sekiguchi, S. Obika, and T. Imanishi 2′-O,4′-C-Methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH: thermodynamic and kinetic studies J. Biol. Chem. 276 2001 2354 2360
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 2354-2360
-
-
Torigoe, H.1
Hari, Y.2
Sekiguchi, M.3
Obika, S.4
Imanishi, T.5
-
21
-
-
67949086671
-
High-affinity triplex targeting of double stranded DNA using chemically modified peptide nucleic acid oligomers
-
M.E. Hansen, T. Bentin, and P.E. Nielsen High-affinity triplex targeting of double stranded DNA using chemically modified peptide nucleic acid oligomers Nucleic Acids Res. 37 2009 4498 4507
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4498-4507
-
-
Hansen, M.E.1
Bentin, T.2
Nielsen, P.E.3
-
22
-
-
70349554371
-
Potent triple helix stabilization by 5′,3′-modified triplex-forming oligonucleotides
-
N.B. Gaied, Z. Zhao, S.R. Gerrard, K.R. Fox, and T. Brown Potent triple helix stabilization by 5′,3′-modified triplex-forming oligonucleotides ChemBioChem 10 2009 1839 1851
-
(2009)
ChemBioChem
, vol.10
, pp. 1839-1851
-
-
Gaied, N.B.1
Zhao, Z.2
Gerrard, S.R.3
Fox, K.R.4
Brown, T.5
-
23
-
-
27144488295
-
Stable and selective formation of Hoogsteen-type triplexes and duplexes using twisted intercalating nucleic acids (TINA) prepared via postsynthetic sonogashira solid-phase coupling reactions
-
DOI 10.1021/ja053645d
-
V.V. Filichev, and E.B. Pedersen Stable and selective formation of Hoogsteen-type triplexes and duplexes using twisted intercalating nucleic acids (TINA) prepared via postsynthetic Sonogashira solid-phase coupling reactions J. Am. Chem. Soc. 127 2005 14849 14858 (Pubitemid 41511023)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.42
, pp. 14849-14858
-
-
Filichev, V.V.1
Pedersen, E.B.2
-
24
-
-
77955249371
-
Optimal design of parallel triplex forming oligonucleotides containing twisted intercalating nucleic acids - TINA
-
U.V. Schneider, N.D. Mikkelsen, N. Johnk, L.M. Okkels, H. Westh, and G. Lisby Optimal design of parallel triplex forming oligonucleotides containing twisted intercalating nucleic acids - TINA Nucleic Acids Res. 38 2010 4394 4403
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4394-4403
-
-
Schneider, U.V.1
Mikkelsen, N.D.2
Johnk, N.3
Okkels, L.M.4
Westh, H.5
Lisby, G.6
-
25
-
-
77951664629
-
In vitro selection of oligonucleotides that bind double-stranded DNA in the presence of triplex-stabilizing agents
-
E. Ayel, and C. Escude In vitro selection of oligonucleotides that bind double-stranded DNA in the presence of triplex-stabilizing agents Nucleic Acids Res. 38 2010 e31
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 31
-
-
Ayel, E.1
Escude, C.2
-
26
-
-
0036582707
-
High throughput measurement of duplex, triplex, and quadruplex melting curves using molecular beacons and a LightCycler
-
R.A. Darby, M. Sollogoub, C. McKeen, L. Brown, A. Risitano, N. Brown, C. Barton, T. Brown, and K.R. Fox High throughput measurement of duplex, triplex, and quadruplex melting curves using molecular beacons and a LightCycler Nucleic Acids Res. 30 2002 e39
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 39
-
-
Darby, R.A.1
Sollogoub, M.2
McKeen, C.3
Brown, L.4
Risitano, A.5
Brown, N.6
Barton, C.7
Brown, T.8
Fox, K.R.9
-
27
-
-
0027245412
-
7,8-Dihydro-8-oxoadenine as a replacement for cytosine in the third strand of triple helices. Triplex formation without hypochromicity
-
M.C. Jetter 7,8-Dihydro-8-oxoadenine as a replacement for cytosine in the third strand of triple helices: triplex formation without hypochromicity Biochemistry 32 1993 3249 3254 (Pubitemid 23126889)
-
(1993)
Biochemistry
, vol.32
, Issue.13
, pp. 3249-3254
-
-
Jetter, M.C.1
Hobbs, F.W.2
-
28
-
-
3342993233
-
Specificity of DNA triple helix formation analyzed by a FRET assay
-
DOI 10.1186/1471-2091-3-1, 1
-
S. Reither, and A. Jeltsch Specificity of DNA triple helix formation analyzed by a FRET assay BMC Biotechnol. 3 2002 1 9 (Pubitemid 38994183)
-
(2002)
BMC Biochemistry
, vol.3
, pp. 1-9
-
-
Reither, S.1
Jeltsch, A.2
-
29
-
-
76949095212
-
A novel FRET pair for detection of parallel DNA triplexes by the LightCycler
-
U.V. Schneider, J.K. Severinsen, I. Geci, L.M. Okkels, N. Johnk, N.D. Mikkelsen, T. Klinge, E.B. Pedersen, H. Westh, and G. Lisby A novel FRET pair for detection of parallel DNA triplexes by the LightCycler BMC Biotechnol. 10 2010 4
-
(2010)
BMC Biotechnol.
, vol.10
, pp. 4
-
-
Schneider, U.V.1
Severinsen, J.K.2
Geci, I.3
Okkels, L.M.4
Johnk, N.5
Mikkelsen, N.D.6
Klinge, T.7
Pedersen, E.B.8
Westh, H.9
Lisby, G.10
-
30
-
-
55849132183
-
Heteropolymeric triplex-based genomic assay to detect pathogens or single-nucleotide polymorphisms in human genomic samples
-
J.I. Daksis, and G.H. Erikson Heteropolymeric triplex-based genomic assay to detect pathogens or single-nucleotide polymorphisms in human genomic samples PLoS ONE 2 2007 e305
-
(2007)
PLoS ONE
, vol.2
, pp. 305
-
-
Daksis, J.I.1
Erikson, G.H.2
-
31
-
-
0025921984
-
Intercalation of ethidium bromide into a triple-stranded oligonucleotide
-
J.L. Mergny, D. Collier, M. Rougee, T. Montenay-Garestier, and C. Helene Intercalation of ethidium bromide into a triple-stranded oligonucleotide Nucleic Acids Res. 19 1991 1521 1526 (Pubitemid 21913246)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.7
, pp. 1521-1526
-
-
Mergny, J.-L.1
Collier, D.2
Rougee, M.3
Montenay-Garestier, T.4
Helene, C.5
-
32
-
-
0025895932
-
Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix
-
D. Pilch, C. Levenson, and R. Shafer Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix Biochemistry 30 1991 6081 6087
-
(1991)
Biochemistry
, vol.30
, pp. 6081-6087
-
-
Pilch, D.1
Levenson, C.2
Shafer, R.3
-
33
-
-
0029040552
-
An unusually stable purine(purine-pyrimidine) short triplex: The third strand stabilizes double-stranded DNA
-
F. Svinarchuk, J. Paoletti, and C. Malvy An unusually stable purine(purine-pyrimidine) short triplex: the third strand stabilizes double-stranded DNA J. Biol. Chem. 270 1995 14068 14071
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 14068-14071
-
-
Svinarchuk, F.1
Paoletti, J.2
Malvy, C.3
-
34
-
-
0025604606
-
Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: A spectroscopic and calorimetric study
-
G.E. Plum, Y.-W. Park, S.F. Singleton, P.B. Dervan, and K.J. Breslauer Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study Proc. Natl. Acad. Sci. USA 87 1990 9436 9440 (Pubitemid 120030641)
-
(1990)
Proceedings of the National Academy of Sciences of the United States of America
, vol.87
, Issue.23
, pp. 9436-9440
-
-
Eric Plum, G.1
Park, Y.-W.2
Singleton, S.F.3
Dervan, P.B.4
Breslauer, K.J.5
-
36
-
-
0027365615
-
A novel DNA duplex. A parallel-stranded DNA helix with Hoogsteen base pairing
-
DOI 10.1021/bi00095a008
-
K. Liu, H. Miles, J. Frazier, and V. Sasisekharan A novel DNA duplex: a parallel-stranded DNA helix with Hoogsteen base pairing Biochemistry 32 1993 11802 11809 (Pubitemid 23344704)
-
(1993)
Biochemistry
, vol.32
, Issue.44
, pp. 11802-11809
-
-
Liu, K.1
Miles, H.T.2
Frazier, J.3
Sasisekharan, V.4
-
37
-
-
0028559132
-
Fluorescence energy transfer between two triple helix-forming oligonucleotides bound to duplex DNA
-
J.L. Mergny, T. Garestier, M. Rougee, A.V. Lebedev, M. Chassignol, N.T. Thuong, and C. Helene Fluorescence energy transfer between two triple helix-forming oligonucleotides bound to duplex DNA Biochemistry 33 1994 15321 15328
-
(1994)
Biochemistry
, vol.33
, pp. 15321-15328
-
-
Mergny, J.L.1
Garestier, T.2
Rougee, M.3
Lebedev, A.V.4
Chassignol, M.5
Thuong, N.T.6
Helene, C.7
|