메뉴 건너뛰기




Volumn 38, Issue 13, 2010, Pages 4394-4403

Optimal design of parallel triplex forming oligonucleotides containing Twisted intercalating nucleic acids-TINA

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; GUANIDINE; NUCLEIC ACID; TWISTED INTERCALATING NUCLEIC ACID; UNCLASSIFIED DRUG;

EID: 77955249371     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq188     Document Type: Article
Times cited : (14)

References (30)
  • 1
    • 27144488295 scopus 로고    scopus 로고
    • Stable and selective formation of hoogsteen-type triplexes and duplexes using twisted intercalating nucleic acids (TINA) prepared via postsynthetic Sonogashira solid-phase coupling reactions
    • Filichev,V.V. and Pedersen,E.B. (2005) Stable and selective formation of hoogsteen-type triplexes and duplexes using twisted intercalating nucleic acids (TINA) prepared via postsynthetic Sonogashira solid-phase coupling reactions. J. Am. Chem. Soc., 127, 14849-14858.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 14849-14858
    • Filichev, V.V.1    Pedersen, E.B.2
  • 2
    • 0027494882 scopus 로고
    • Relative specificities in binding of Watson-Crick base pairs by third strand residues in a DNA pyrimidine triplex motif
    • Fossella,J.A., Kim,Y.J., Shih,H., Richards,E.G. and Fresco,J.R. (1993) Relative specificities in binding of Watson-Crick base pairs by third strand residues in a DNA pyrimidine triplex motif. Nucleic Acids Res., 21, 4511-4515.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4511-4515
    • Fossella, J.A.1    Kim, Y.J.2    Shih, H.3    Richards, E.G.4    Fresco, J.R.5
  • 3
    • 47649084520 scopus 로고    scopus 로고
    • DNA triple helices: biological consequences and therapeutic potential
    • Jain,A., Wang,G. and Vasquez,K.M. (2008) DNA triple helices: biological consequences and therapeutic potential. Biochimie, 90, 1117-1130.
    • (2008) Biochimie , vol.90 , pp. 1117-1130
    • Jain, A.1    Wang, G.2    Vasquez, K.M.3
  • 4
    • 0024298583 scopus 로고
    • Specificity in formation of triple-stranded nucleic acid helical complexes: studies with agarose-linked polyribonucleotide affinity columns
    • Letai,A.G., Palladino,M.A., Fromm,E., Rizzo,V. and Fresco,J.R. (1988) Specificity in formation of triple-stranded nucleic acid helical complexes: studies with agarose-linked polyribonucleotide affinity columns. Biochemistry, 27, 9108-9112.
    • (1988) Biochemistry , vol.27 , pp. 9108-9112
    • Letai, A.G.1    Palladino, M.A.2    Fromm, E.3    Rizzo, V.4    Fresco, J.R.5
  • 5
    • 0025817256 scopus 로고
    • Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation
    • Beal,P.A. and Dervan,P.B. (1991) Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation. Science, 251, 1360-1363.
    • (1991) Science , vol.251 , pp. 1360-1363
    • Beal, P.A.1    Dervan, P.B.2
  • 6
    • 0027168393 scopus 로고
    • Sequence-specific recognition of double helical RNA and RNA:DNA by triple helix formation
    • Han,H. and Dervan,P.B. (1993) Sequence-specific recognition of double helical RNA and RNA:DNA by triple helix formation. Proc. Natl Acad. Sci. USA, 90, 3806-3810.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3806-3810
    • Han, H.1    Dervan, P.B.2
  • 7
    • 0027715886 scopus 로고
    • Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies
    • Escude,C., Francois,J.C., Sun,J.S., Ott,G., Sprinzl,M., Garestier,T. and Helene,C. (1993) Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies. Nucleic Acids Res., 21, 5547-5553.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5547-5553
    • Escude, C.1    Francois, J.C.2    Sun, J.S.3    Ott, G.4    Sprinzl, M.5    Garestier, T.6    Helene, C.7
  • 8
    • 0027089978 scopus 로고
    • Stability and properties of double and triple helices - dramatic effects of Rna Or Dna backbone composition
    • Roberts,R.W. and Crothers,D.M. (1992) Stability and properties of double and triple helices - dramatic effects of Rna Or Dna backbone composition. Science, 258, 1463-1466.
    • (1992) Science , vol.258 , pp. 1463-1466
    • Roberts, R.W.1    Crothers, D.M.2
  • 9
    • 0018788076 scopus 로고
    • Complexes formed by (pyrimidine)n. (purine)n DNAs on lowering the pH are three-stranded
    • Lee,J.S., Johnson,D.A. and Morgan,A.R. (1979) Complexes formed by (pyrimidine)n. (purine)n DNAs on lowering the pH are three-stranded. Nucleic Acids Res., 6, 3073-3091.
    • (1979) Nucleic Acids Res. , vol.6 , pp. 3073-3091
    • Lee, J.S.1    Johnson, D.A.2    Morgan, A.R.3
  • 10
    • 0024976397 scopus 로고
    • Triple-strand formation in the homopurine:homopyrimidine DNA oligonucleotides d(G-A)4 and d(T-C)4
    • Rajagopal,P. and Feigon,J. (1989) Triple-strand formation in the homopurine:homopyrimidine DNA oligonucleotides d(G-A)4 and d(T-C)4. Nature, 339, 637-640.
    • (1989) Nature , vol.339 , pp. 637-640
    • Rajagopal, P.1    Feigon, J.2
  • 11
    • 0024843757 scopus 로고
    • Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops
    • Sundquist,W.I. and Klug,A. (1989) Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops. Nature, 342, 825-829.
    • (1989) Nature , vol.342 , pp. 825-829
    • Sundquist, W.I.1    Klug, A.2
  • 12
    • 77952537693 scopus 로고    scopus 로고
    • Optimization of the sequence of twisted intercalating nucleic acids (TINA) forming triple helix with the polypurine tract of the proviral HIV DNA
    • Boutorine,A.S., Doluca,O. and Filichev,V.V. (2009) Optimization of the sequence of twisted intercalating nucleic acids (TINA) forming triple helix with the polypurine tract of the proviral HIV DNA. Nucleic Acids Symp. Ser. (Oxf), 53, 139-140.
    • (2009) Nucleic Acids Symp. Ser. (Oxf) , vol.53 , pp. 139-140
    • Boutorine, A.S.1    Doluca, O.2    Filichev, V.V.3
  • 15
    • 45549100155 scopus 로고    scopus 로고
    • Purine twisted-intercalating nucleic acids: a new class of anti-gene molecules resistant to potassium-induced aggregation
    • Paramasivam,M., Cogoi,S., Filichev,V.V., Bomholt,N., Pedersen,E.B. and Xodo,L.E. (2008) Purine twisted-intercalating nucleic acids: a new class of anti-gene molecules resistant to potassium-induced aggregation. Nucleic Acids Res., 36, 3494-3507
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3494-3507
    • Paramasivam, M.1    Cogoi, S.2    Filichev, V.V.3    Bomholt, N.4    Pedersen, E.B.5    Xodo, L.E.6
  • 16
    • 60549101098 scopus 로고    scopus 로고
    • Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells
    • Cogoi,S., Paramasivam,M., Filichev,V., Geci,I., Pedersen,E.B. and Xodo,L.E. (2009) Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells. J. Med. Chem., 52, 564-568.
    • (2009) J. Med. Chem. , vol.52 , pp. 564-568
    • Cogoi, S.1    Paramasivam, M.2    Filichev, V.3    Geci, I.4    Pedersen, E.B.5    Xodo, L.E.6
  • 17
    • 34547563863 scopus 로고    scopus 로고
    • Stabilization of parallel triplexes by twisted intercalating nucleic acids (TINAs) incorporating 1,2,3-triazole units and prepared by microwave-accelerated click chemistry
    • Géci,I., Filichev,V.V. and Pedersen,E.B. (2007) Stabilization of parallel triplexes by twisted intercalating nucleic acids (TINAs) incorporating 1,2,3-triazole units and prepared by microwave-accelerated click chemistry. Chem. Eur. J., 13, 6379-6386.
    • (2007) Chem. Eur. J. , vol.13 , pp. 6379-6386
    • Géci, I.1    Filichev, V.V.2    Pedersen, E.B.3
  • 18
    • 53549133336 scopus 로고    scopus 로고
    • High physiological thermal triplex stability optimization of twisted intercalating nucleic acids (TINA)
    • Bomholt,N., Ostnan,A.M.A. and Pedersen,E.B. (2008) High physiological thermal triplex stability optimization of twisted intercalating nucleic acids (TINA). Organic Biomol. Chem., 6, 3714-3722.
    • (2008) Organic Biomol. Chem. , vol.6 , pp. 3714-3722
    • Bomholt, N.1    Ostnan, A.M.A.2    Pedersen, E.B.3
  • 19
    • 33746677986 scopus 로고    scopus 로고
    • Synthesis of twisted intercalating nucleic acids possessing acridine derivatives. Thermal stability studies
    • Geci,I., Filichev,V.V. and Pedersen,E.B. (2006) Synthesis of twisted intercalating nucleic acids possessing acridine derivatives. Thermal stability studies. Bioconjug. Chem., 17, 950-957.
    • (2006) Bioconjug. Chem. , vol.17 , pp. 950-957
    • Geci, I.1    Filichev, V.V.2    Pedersen, E.B.3
  • 20
    • 55749111692 scopus 로고    scopus 로고
    • Using an aryl phenanthroimidazole moiety as a conjugated flexible intercalator to improve the hybridization efficiency of a triplex-forming oligonucleotide
    • Osman,A.M.A., Jorgensen,P.T., Bomholt,N. and Pedersen,E.B. (2008) Using an aryl phenanthroimidazole moiety as a conjugated flexible intercalator to improve the hybridization efficiency of a triplex-forming oligonucleotide. Bioorganic Med. Chem., 16, 9937-9947.
    • (2008) Bioorganic Med. Chem. , vol.16 , pp. 9937-9947
    • Osman, A.M.A.1    Jorgensen, P.T.2    Bomholt, N.3    Pedersen, E.B.4
  • 24
    • 33747767611 scopus 로고    scopus 로고
    • DNA triple-helix formation at target sites containing duplex mismatches
    • Rusling,D.A., Brown,T. and Fox,K.R. (2006) DNA triple-helix formation at target sites containing duplex mismatches. Biophys. Chem., 123, 134-140.
    • (2006) Biophys. Chem. , vol.123 , pp. 134-140
    • Rusling, D.A.1    Brown, T.2    Fox, K.R.3
  • 25
    • 0028799061 scopus 로고
    • NMR characterisation of a triple stranded complex formed by homo-purine and homo-pyrimidine DNA strands at 1:1 molar ratio and acidic pH
    • Bhaumik,S.R., Chary,K.V., Govil,G., Liu,K. and Miles,H.T. (1995) NMR characterisation of a triple stranded complex formed by homo-purine and homo-pyrimidine DNA strands at 1:1 molar ratio and acidic pH. Nucleic Acids Res., 23, 4116-4121.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4116-4121
    • Bhaumik, S.R.1    Chary, K.V.2    Govil, G.3    Liu, K.4    Miles, H.T.5
  • 26
    • 0033567007 scopus 로고    scopus 로고
    • Evidence from CD spectra and melting temperatures for stable Hoogsteen-paired oligomer duplexes derived from DNA and hybrid triplexes
    • Hashem,G.M., Wen,J.D., Do,Q. and Gray,D.M. (1999) Evidence from CD spectra and melting temperatures for stable Hoogsteen-paired oligomer duplexes derived from DNA and hybrid triplexes. Nucleic Acids Res., 27, 3371-3379.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3371-3379
    • Hashem, G.M.1    Wen, J.D.2    Do, Q.3    Gray, D.M.4
  • 27
    • 0029128420 scopus 로고
    • UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; evidence for a proton switch
    • Lavelle,L. and Fresco,J.R. (1995) UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; evidence for a proton switch. Nucleic Acids Res., 23, 2692-2705.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2692-2705
    • Lavelle, L.1    Fresco, J.R.2
  • 28
    • 0029777492 scopus 로고    scopus 로고
    • Calorimetric analysis of triple helices targeted to the d(G3A4G3).d(C3T4C3) duplex
    • Scaria,P.V. and Shafer,R.H. (1996) Calorimetric analysis of triple helices targeted to the d(G3A4G3).d(C3T4C3) duplex. Biochemistry, 35, 10985-10994.
    • (1996) Biochemistry , vol.35 , pp. 10985-10994
    • Scaria, P.V.1    Shafer, R.H.2
  • 29
    • 0025006294 scopus 로고
    • Structure and stability of a Dna triple helix in solution - Nmr-studies on D(T)6.D(A)6. D(T)6 and its complex with a minor groove binding-drug
    • Umemoto,K., Sarma,M.H., Gupta,G., Luo,J. and Sarma,R.H. (1990) Structure and stability of a Dna triple helix in solution - Nmr-studies on D(T)6.D(A)6.D(T)6 and its complex with a minor groove binding-drug. J. Am. Chem. Soc., 112, 4539-4545.
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 4539-4545
    • Umemoto, K.1    Sarma, M.H.2    Gupta, G.3    Luo, J.4    Sarma, R.H.5
  • 30
    • 39749132877 scopus 로고    scopus 로고
    • Studies of the intermolecular DNA triplexes of C+.GC and T. AT triplets by electrospray ionization Fourier-transform ion cyclotron resonance mass spectrometry
    • Wan,C., Guo,X., Liu,Z. and Liu,S. (2008) Studies of the intermolecular DNA triplexes of C+.GC and T.AT triplets by electrospray ionization Fourier-transform ion cyclotron resonance mass spectrometry. J. Mass Spectrom., 43, 164-172.
    • (2008) J. Mass Spectrom. , vol.43 , pp. 164-172
    • Wan, C.1    Guo, X.2    Liu, Z.3    Liu, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.