Triplex formation by oligonucleotides containing novel deoxycytidine derivatives

Nucleic Acids Research

Volumn 24, Issue 13, 1996, Pages 2606-2613

  Huang, Chin Yi ^a,b   Bi, Guixia ^a   Miller, Paul S ^a  

^a JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

^b NOVARTIS PHARMA AG   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYCYTIDINE; DIMETHYL SULFATE; DOUBLE STRANDED DNA; OLIGONUCLEOTIDE; SYNTHETIC DNA;

ARTICLE; BASE PAIRING; CIRCULAR DICHROISM; DNA ALKYLATION; DNA DNA HYBRIDIZATION; DNA METHYLATION; DNA STRUCTURE; HYDROGEN BOND; MOLECULAR RECOGNITION; PRIORITY JOURNAL; STRUCTURE ACTIVITY RELATION; TRIPLE HELIX; ULTRAVIOLET RADIATION;

ALKYLATION; BASE SEQUENCE; BINDING SITES; DEOXYCYTIDINE; DNA; HYDROGEN BONDING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; OLIGODEOXYRIBONUCLEOTIDES; STRUCTURE-ACTIVITY RELATIONSHIP; SULFURIC ACID ESTERS;

EID: 0029901452     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.13.2606     Document Type: Article

References (30)

1. Radhakrishnan,I. and Patel,D.J. (1994) Biochemistry, 33, 11405-11416.
2. Behe,M.J. (1987) Biochemistry, 26, 7870-7875.
3. Branch,A.D., Lee,S.E., Neel,O.D. and Robertson,H.D. (1993) Nucleic Acids Res., 21, 3529-3535.
4. Shea,R.G., Ng,P. and Bishofberger,N. (1990) Nucleic Acids Res., 18, 4859-4866.
5. Roberts,R.W. and Crothers,D.M., (1991) Proc. Natl. Acad. Sci. USA, 88, 9397-9401.
6. Mergny,J.-L., Sun,J.-S., Rougée,M., Montenay-Garestier,T., Barcelo,F., Chomilier,J. and Hélène,C. (1991) Biochemistry, 30, 9791-9798.
7. Beal,P.A. and Dervan,P.B. (1992) Nucleic Acids Res., 11, 2773-2776.
8. Yoon,K., Hobbs,C.A., Koch,J., Sardaro,M., Kutny,R. and Weis,A.L. (1992) Proc. Natl. Acad. Sci. USA, 89, 3840-3844.
9. Fossella,J.A., Kim,Y.J., Shih,H., Richards,E.G. and Fresco,J.R. (1993) Nucleic Acids Res., 21, 4511-4515.
10. Miller,P.S. and Cushman,C.D. (1993) Biochemistry, 32, 2999-3004.
11. Horne,D.A. and Dervan,P.B. (1991) Nucleic Acids Res., 19, 4963-4965.
12. Griffin,L.C. and Dervan,P.B. (1989) Science, 245, 967-971.
13. Radhakrishnan,I., Gao,X., de los Santos,C., Live,D. and Patel,D.J. (1991) Biochemistry, 30, 9022-9030.
14. Wang,E., Malek,S. and Feigon,J. (1992) Biochemistry, 31, 4838-4846.
15. Radhakrishnan,I. and Patel,D.J. (1994) J. Mol. Biol., 241, 600-619.
16. Stilz,H.U. and Dervan,P.B. (1993) Biochemistry, 32, 2177-2185.
17. Durland,R.H., Rao,T.S., Revankar,G.R., Tinsley,J.H., Myrick,M.A., Seth,D.M., Rayford,J., Singh,P. and Jayaraman,K. (1994) Nucleic Acids Res., 22, 3233-3240.
18. Rao,T.S., Hogan,M.E. and Revankar,G.R. (1994) Nucleosides Nucleotides, 13, 95-107.
19. Griffin,L.C., Kiessling,L.L., Beal,P.A., Gillespie,P. and Dervan,P.B. (1992) J. Am. Chem. Soc., 114, 7976-7982.
20. Koshlap,K.M., Gillespie,P., Dervan,P.B. and Feigon,J. (1993) J. Am. Chem. Soc., 115, 7908-7909.
21. Durland,R.H., Rao,T.S., Bodepudi,V., Seth,D.M., Jayaraman,K. and Revankar,G.R. (1995) Nucleic Acids Res., 23, 647-653.
22. Gee,J.E., Revankar,R., Rao,J.S. and Hogan,M.E. (1995) Biochemistry, 33, 2042-2048.
23. Zimmerman,S.C. and Schmitt,P. (1995) J. Am. Chem. Soc., 117, 10769-10770.
24. Huang,C.-Y. and Miller,P.S. (1993) J. Am. Chem. Soc., 115, 10456-10457.
25. Divakar,K.J. and Reese,C.B. (1982) J. Chem. Soc., 1171-1176.
26. Brown,T. and Brown,D.J.S. (1991) In Eckstein,F. (ed.), Oligonucleotides and Analogues. A Practical Approach. IRL Press, Oxford, UK, pp. 1-24.
27. Miller,P.S., Bhan,P., Cushman,C.D. and Trapane,T.L. (1992) Biochemistry, 31, 6788-6793.
28. Washbrook,E. and Fox,K.R. (1994) Biochem J., 301, 569-575.
29. Huang,C.-Y., Cushman,C.D. and Miller,P.S. (1993) J. Org. Chem., 58, 5084-5049.
30. Pilch,D.S., Levenson,C. and Shafer,R.H. (1990) Proc. Natl. Acad. Sci. USA, 87, 1942-1946.