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Volumn 12, Issue 12, 2002, Pages 1943-1949

Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 0036907035     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.655102     Document Type: Review
Times cited : (23)

References (46)
  • 2
    • 0026328675 scopus 로고
    • Genomic mapping by anchoring random clones: A mathematical analysis
    • Arratia, R., Lander, E.S., Tavaré, S., and Waterman, M.S. 1991. Genomic mapping by anchoring random clones: A mathematical analysis. Genomics 11: 806-827.
    • (1991) Genomics , vol.11 , pp. 806-827
    • Arratia, R.1    Lander, E.S.2    Tavaré, S.3    Waterman, M.S.4
  • 3
    • 0026287618 scopus 로고
    • Statistical analysis of DNA fingerprint data for ordered clone physical mapping of human chromosomes
    • Balding, D.J. and Torney, D.C. 1991. Statistical analysis of DNA fingerprint data for ordered clone physical mapping of human chromosomes. Bull. Math. Biol. 53: 853-879.
    • (1991) Bull. Math. Biol. , vol.53 , pp. 853-879
    • Balding, D.J.1    Torney, D.C.2
  • 4
    • 0035675041 scopus 로고    scopus 로고
    • An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence
    • Chang, Y.L., Tao, Q., Scheuring, C., Ding, K., Meksem, K., and Zhang, H.-B. 2001. An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence. Genetics 159: 1231-1242.
    • (2001) Genetics , vol.159 , pp. 1231-1242
    • Chang, Y.L.1    Tao, Q.2    Scheuring, C.3    Ding, K.4    Meksem, K.5    Zhang, H.-B.6
  • 6
    • 85038340693 scopus 로고    scopus 로고
    • Sequence determination from overlapping fragments: A simple model of whole-genome shotgun sequencing
    • art. no. 068106
    • Derrida, B. and Fink, T.M.A. 2002. Sequence determination from overlapping fragments: A simple model of whole-genome shotgun sequencing. Phys. Rev. Lett. 88: art. no. 068106.
    • (2002) Phys. Rev. Lett. , vol.88
    • Derrida, B.1    Fink, T.M.A.2
  • 7
    • 0031626786 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa PAO1 bacterial artificial chromosomes: Strategies for mapping, screening, and sequencing 100 kb loci of the 5.9 Mb genome
    • Dewar, K., Sabbagh, L., Cardinal, G., Veilleux, F., Sanschagrin, F., Birren, B., and Levesque, R.C. 1998. Pseudomonas aeruginosa PAO1 bacterial artificial chromosomes: Strategies for mapping, screening, and sequencing 100 kb loci of the 5.9 Mb genome. Microb. Comp. Genomics 3: 105-117.
    • (1998) Microb. Comp. Genomics , vol.3 , pp. 105-117
    • Dewar, K.1    Sabbagh, L.2    Cardinal, G.3    Veilleux, F.4    Sanschagrin, F.5    Birren, B.6    Levesque, R.C.7
  • 8
    • 0031306196 scopus 로고    scopus 로고
    • Bacterial artificial chromosome (BAC) library as a tool for physical mapping of the archaeon Methanosarcina thermophila TM-1
    • Diaz-Perez, S.V., Alatriste-Mondragon, F., Hernandez, R., Birren, B., and Gunsalus, R.P. 1997. Bacterial artificial chromosome (BAC) library as a tool for physical mapping of the archaeon Methanosarcina thermophila TM-1. Microb. Comp. Genomics 2: 275-286.
    • (1997) Microb. Comp. Genomics , vol.2 , pp. 275-286
    • Diaz-Perez, S.V.1    Alatriste-Mondragon, F.2    Hernandez, R.3    Birren, B.4    Gunsalus, R.P.5
  • 10
    • 0012109498 scopus 로고
    • The random division of an interval and the random covering of a circle
    • Flatto, L. and Konheim, A.G. 1962. The random division of an interval and the random covering of a circle. SIAM Rev. 4: 211-222.
    • (1962) SIAM Rev. , vol.4 , pp. 211-222
    • Flatto, L.1    Konheim, A.G.2
  • 12
    • 0003508389 scopus 로고
    • Introduction to the theory of coverage processes
    • John Wiley & Sons, New York, NY
    • Hall, P. 1988. Introduction to the theory of coverage processes. John Wiley & Sons, New York, NY.
    • (1988)
    • Hall, P.1
  • 14
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 16
    • 0003858660 scopus 로고
    • Geometrical probability
    • Hafner Publishing Company, New York, NY
    • Kendall, M.G. and Moran, P.A.P. 1963. Geometrical probability. Hafner Publishing Company, New York, NY.
    • (1963)
    • Kendall, M.G.1    Moran, P.A.P.2
  • 17
    • 0029003260 scopus 로고
    • Physical mapping of complex genomes by sampled sequencing: A theoretical analysis
    • Kupfer, K., Smith, M.W., Quackenbush, J., and Evans, G.A. 1995. Physical mapping of complex genomes by sampled sequencing: A theoretical analysis. Genomics 27: 90-100.
    • (1995) Genomics , vol.27 , pp. 90-100
    • Kupfer, K.1    Smith, M.W.2    Quackenbush, J.3    Evans, G.A.4
  • 18
    • 0023988195 scopus 로고
    • Genomic mapping by fingerprinting random clones: A mathematical analysis
    • Lander, E.S. and Waterman, M.S. 1988. Genomic mapping by fingerprinting random clones: A mathematical analysis. Genomics 2: 231-239.
    • (1988) Genomics , vol.2 , pp. 231-239
    • Lander, E.S.1    Waterman, M.S.2
  • 19
    • 0026619718 scopus 로고
    • Genomic mapping by single copy landmark detection: A predictive model with a discrete mathematical approach
    • Marr, T.G., Yan, X., and Yu, Q. 1992. Genomic mapping by single copy landmark detection: A predictive model with a discrete mathematical approach. Mamm. Genome 3: 644-649.
    • (1992) Mamm. Genome , vol.3 , pp. 644-649
    • Marr, T.G.1    Yan, X.2    Yu, Q.3
  • 23
    • 0346388742 scopus 로고    scopus 로고
    • Whole-genome DNA sequencing
    • Myers, G. 1999. Whole-genome DNA sequencing. Comput. Sci. Eng. 1: 33-43.
    • (1999) Comput. Sci. Eng. , vol.1 , pp. 33-43
    • Myers, G.1
  • 27
    • 0028914393 scopus 로고
    • Genomic mapping by end-characterized random clones: A mathematical analysis
    • Port, E., Sun, F., Martin, D., and Waterman, M.S. 1995. Genomic mapping by end-characterized random clones: A mathematical analysis. Genomics 26: 84-100.
    • (1995) Genomics , vol.26 , pp. 84-100
    • Port, E.1    Sun, F.2    Martin, D.3    Waterman, M.S.4
  • 28
    • 0029610763 scopus 로고
    • Random subcloning
    • Roach, J.C. 1995. Random subcloning. Genome Res. 5: 464-473.
    • (1995) Genome Res. , vol.5 , pp. 464-473
    • Roach, J.C.1
  • 29
    • 0028987725 scopus 로고
    • Pairwise end sequencing: A unified approach to genomic mapping and sequencing
    • Roach, J.C., Boysen, C., Wang, K., and Hood, L. 1995. Pairwise end sequencing: A unified approach to genomic mapping and sequencing. Genomics 26: 345-353.
    • (1995) Genomics , vol.26 , pp. 345-353
    • Roach, J.C.1    Boysen, C.2    Wang, K.3    Hood, L.4
  • 32
    • 0020457909 scopus 로고
    • Theoretical study of the fraction of a long-chain DNA that can be incorporated in a recombinant DNA partial-digest library
    • Seed, B. 1982. Theoretical study of the fraction of a long-chain DNA that can be incorporated in a recombinant DNA partial-digest library. Biopolymers 21: 1793-1810.
    • (1982) Biopolymers , vol.21 , pp. 1793-1810
    • Seed, B.1
  • 33
    • 0026703169 scopus 로고
    • Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector
    • Shizuya, H., Birren, B., Kim, U.J., Mancino, V., Slepak, T., Tachiiri, Y., and Simon, M. 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. 89: 8794-8797.
    • (1992) Proc. Natl. Acad. Sci. , vol.89 , pp. 8794-8797
    • Shizuya, H.1    Birren, B.2    Kim, U.J.3    Mancino, V.4    Slepak, T.5    Tachiiri, Y.6    Simon, M.7
  • 34
    • 0012182841 scopus 로고
    • Asymptotic coverage distributions on the circle
    • Siegel, A.F. 1979. Asymptotic coverage distributions on the circle. Ann. Probability 7: 651-661.
    • (1979) Ann. Probability , vol.7 , pp. 651-661
    • Siegel, A.F.1
  • 36
    • 0004231341 scopus 로고
    • Geometric probability
    • Society for Industrial and Applied Mathematics, Philadelphia, PA
    • Solomon, H. 1978. Geometric probability. Society for Industrial and Applied Mathematics, Philadelphia, PA.
    • (1978)
    • Solomon, H.1
  • 37
    • 0012183442 scopus 로고
    • Solution to a geometrical problem in probability
    • Stevens, W.L. 1939. Solution to a geometrical problem in probability. Ann. Eugen. 9: 315-320.
    • (1939) Ann. Eugen. , vol.9 , pp. 315-320
    • Stevens, W.L.1
  • 38
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative
    • The Arabidopsis Genome Initiative 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 39
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • elegans Sequencing Consortium
    • The C. elegans Sequencing Consortium 1998. Genome sequence of the nematode C. elegans: A platform for investigating biology. Science 282: 2012-2018.
    • (1998) Science , vol.282 , pp. 2012-2018
    • The, C.1
  • 41
    • 0026033351 scopus 로고
    • Mapping using unique sequences
    • Torney, D.C. 1991. Mapping using unique sequences. J. Mol. Biol. 217: 259-264.
    • (1991) J. Mol. Biol. , vol.217 , pp. 259-264
    • Torney, D.C.1
  • 43
  • 45
    • 0034638637 scopus 로고    scopus 로고
    • Genomic organization, chromosomal localization, and the complete 22 kb DNA sequence of the human GCMa/GCM1,a placenta-specific transcription factor gene
    • Yamada, K., Ogawa, H., Tamiya, G., Ikeno, M., Morita, M., Asakawa, S., Shimizu, N., and Okazaki, T. 2000. Genomic organization, chromosomal localization, and the complete 22 kb DNA sequence of the human GCMa/GCM1,a placenta-specific transcription factor gene. Biochem. Biophys. Res. Commun. 278: 134-139.
    • (2000) Biochem. Biophys. Res. Commun. , vol.278 , pp. 134-139
    • Yamada, K.1    Ogawa, H.2    Tamiya, G.3    Ikeno, M.4    Morita, M.5    Asakawa, S.6    Shimizu, N.7    Okazaki, T.8
  • 46
    • 0032883192 scopus 로고    scopus 로고
    • Physical map and organization of chromosome 7 in the rice blast fungus Magnaporthe grisea
    • Zhu, H., Blackmon, B.P., Sasinowski, M., and Dean, R.A. 1999. Physical map and organization of chromosome 7 in the rice blast fungus Magnaporthe grisea. Genome Res. 9: 739-750.
    • (1999) Genome Res. , vol.9 , pp. 739-750
    • Zhu, H.1    Blackmon, B.P.2    Sasinowski, M.3    Dean, R.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.