Complete genomic characterization of cell culture adapted human G12P[6] rotaviruses isolated from South Korea

Virus Genes

Volumn 42, Issue 3, 2011, Pages 317-322

  Than, Van Thai ^a   Le, Van Phan ^a   Lim, Inseok ^a   Kim, Wonyong ^a  

^a Chung Ang University College of Medicine   (South Korea)

Author keywords

G12; Korean rotavirus; Phylogenetic analysis

Indexed keywords

ARTICLE; GENE SEQUENCE; GENOTYPE; HUMAN CELL CULTURE; HUMAN ROTAVIRUS; INFECTIOUS DIARRHEA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; UNINDEXED SEQUENCE; VIRUS CELL INTERACTION; VIRUS CHARACTERIZATION; VIRUS CLASSIFICATION; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN;

BASE SEQUENCE; CELL CULTURE TECHNIQUES; CELL LINE; FEMALE; GENOME, VIRAL; HUMANS; INFANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; REPUBLIC OF KOREA; ROTAVIRUS; ROTAVIRUS INFECTIONS;

HUMAN ROTAVIRUS A; ROTAVIRUS;

EID: 79959717761     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-011-0576-x     Document Type: Article

References (48)

1. A.Z. Kapikian, Novartis Found. Symp. 238, 153-171; discussion 171-159 (2001)
2. U.D. Parashar, E.G. Hummelman, J.S. Bresee, M.A. Miller, R.I. Glass, Emerg. Infect. Dis. 9, 565-572 (2003)
3. U.D. Parashar, C.J. Gibson, J.S. Bresse, R.I. Glass, Emerg. Infect. Dis. 12, 304-306 (2006)
4. J.K. Seo, J.G. Sim, Pediatr. Int. 42, 406-410 (2000)
5. M.K. Estes, A.Z. Kapikian, in Fields Virology ed. by D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus, 5th edn. (Lippincott Williams & Wilkins, Philadelphia, 2007), pp. 1917-1974
6. K. Ursu, P. Kisfali, D. Rigo, E. Ivanics, K. Erdelyi, A. Dan, B. Melegh, V. Martella, K. Banyai, Arch. Virol. 154, 1365-1369 (2009)
7. O.D. Solberg, M.E. Hasing, G. Trueba, J.N. Eisenberg, Virology 385, 58-67 (2009)
8. J. Matthijnssens, M. Ciarlet, E. Heiman, I. Arijs, T. Delbeke, S.M. McDonald, E.A. Palombo, M. Iturriza-Gómara, P. Maes, J.T. Patton, M. Rahman, M. Van Ranst, J. Virol. 82, 3204-3219 (2008)
9. K. Taniguchi, T. Urasawa, N. Kobayashi, M. Gorziglia, S. Urasawa, J. Virol. 64, 5640-5644 (1990)
10. A.A. Castello, M.H. Arguelles, R.P. Rota, A. Olthoff, B. Jiang, R.I. Glass, J.R. Gentsch, G. Glikmann, J. Clin. Microbiol. 44, 2046-2050 (2006)
11. A.A. Castello, T. Nakagomi, O. Nakagomi, B. Jiang, J.O. Kang, R.I. Glass, G. Glikmann, J.R. Gentsch, J. Med. Virol. 81, 371-381 (2009)
12. M. Rahman, J. Matthijnssens, X. Yang, T. Delbeke, I. Arijs, K. Taniguchi, M. Iturriza-Gomara, N. Iftekharuddin, T. Azim, M. Van Ranst, J. Virol. 81, 2382-2390 (2007)
13. S.K. Paul, M.U. Ahmed, M.A. Hossain, M.C. Mahmud, M.R. Bhuiyan, S.K. Saha, S. Tabassum, Mymensingh Med. J. 19, 16-26 (2010)
14. E. Pietruchinski, F. Benati, F. Lauretti, J. Kisielius, M. Ueda, E.M. Volotao, C.C. Soares, Y. Hoshino, R.E. Linhares, C. Nozawa, N. Santos, J. Med. Virol. 78, 1241-1249 (2006)
15. C. Pietsch, U.G. Liebert, Emerg. Infect. Dis. 15, 1512-1515 (2009)
16. K. Banyai, A. Bogdan, P. Kisfali, P. Molnar, I. Mihaly, B. Melegh, V. Martella, J.R. Gentsch, G. Szucs, Emerg. Infect. Dis. 13, 916-919 (2007)
17. S. Das, V. Varghese, S. Chaudhury, P. Barman, S. Mahapatra, K. Kojima, S.K. Bhattacharya, T. Krishnan, R.K. Ratho, G.P. Chhotray, A.C. Phukan, N. Kobayashi, T.N. Naik, J. Clin. Microbiol. 41, 2760-2762 (2003)
18. A. Mukherjee, S. Chattopadhyay, P. Bagchi, D. Dutta, N.B. Singh, R. Arora, U.D. Parashar, J.R. Gentsch, M. Chawla-Sarkar, Infect. Genet. Evol. 10, 311-320 (2010)
19. W.N. Wulan, E. Listiyaningsih, K.M. Samsi, M.D. Agtini, M.R. Kasper, S.D. Putnam, Emerg. Infect. Dis. 16, 159-161 (2010)
20. T. Grassi, A. De Donno, M. Guido, G. Gabutti, J. Prev. Med. Hyg. 47, 138-141 (2006)
21. K. Shinozaki, M. Okada, S. Nagashima, I. Kaiho, K. Taniguchi, J. Med. Virol. 73, 612-616 (2004)
22. N.A. Cunliffe, B.M. Ngwira, W. Dove, O. Nakagomi, T. Nakagomi, A. Perez, C.A. Hart, P.N. Kazembe, C.C. Mwansambo, Emerg. Infect. Dis. 15, 87-90 (2009)
23. R. Uchida, B.D. Pandey, J.B. Sherchand, K. Ahmed, M. Yokoo, T. Nakagomi, L.E. Cuevas, N.A. Cunliffe, C.A. Hart, O. Nakagomi, J. Clin. Microbiol. 44, 3499-3505 (2006)
24. M. Martinez, A.A. Amarilla, M.E. Galeano, V.H. Aquino, N. Farina, G. Russomando, G.I. Parra, Arch. Virol. 155, 525-533 (2010)
25. G.I. Parra, E.E. Espinola, A.A. Amarilla, J. Stupka, M. Martinez, M. Zunini, M.E. Galeano, K. Gomes, G. Russomando, J. Arbiza, J. Clin. Virol. 40, 135-141 (2007)
26. M.M. Alam, S.A. Malik, S. Shaukat, A. Naeem, S. Sharif, M. Angez, M.S. Rana, A. Khurshid, S.Z. Zaidi, Virus Res. 144, 280-284 (2009)
27. A.M. Kheyami, T. Nakagomi, O. Nakagomi, W. Dove, C.A. Hart, N.A. Cunliffe, J. Clin. Microbiol. 46, 1185-1191 (2008)
28. A. Steyer, M. Poljsak-Prijatelj, T.L. Bufon, N. Marcun-Varda, J. Marin, J. Med. Virol. 79, 626-632 (2007)
29. N.A. Page, M.C. de Beer, L.M. Seheri, J.B. Dewar, A.D. Steele, J. Med. Virol. 81, 106-113 (2009)
30. V.P. Le, J.Y. Kim, S.L. Cho, S.W. Nam, I. Lim, H.J. Lee, K. Kim, S.I. Chung, W. Song, K.M. Lee, M.S. Rhee, J.S. Lee, W. Kim, J. Med. Virol. 80, 175-182 (2008)
31. G. Cilla, M. Montes, M. Gomariz, L. Pineiro, E. Perez-Trallero, Eur. J. Clin. Microbiol. Infect. Dis. 29, 955-960 (2010)
32. K. Ahmed, R. Batuwanthudawe, T.G. Chandrasena, M.T. Mitui, S. Rajindrajith, G. Galagoda, S.B. Pun, R. Uchida, O. Kunii, K. Moji, N. Abeysinghe, A. Nishizono, O. Nakagomi, Arch. Virol. 155, 71-75 (2009)
33. Y. Pongsuwanna, R.Guntapong, M.Chiwakul, R.Tacharoenmuang, N. Onvimala, M. Wakuda, N. Kobayashi, K. Taniguchi, J. Clin. Microbiol. 40, 1390-1394 (2002)
34. D.D. Griffin, T. Nakagomi, Y. Hoshino, O. Nakagomi, C.D. Kirkwood, U.D. Parashar, R.I. Glass, J.R. Gentsch, Virology 294, 256-269 (2002)
35. M.M. Freeman, T. Kerin, J. Hull, E. Teel, M. Esona, U. Parashar, R.I. Glass, J.R. Gentsch, J. Med. Virol. 81, 736-746 (2009)
36. J. Matthijnssens, M. Rahman, V. Martella, Y. Xuelei, S. De Vos, K. De Leener, M. Ciarlet, C. Buonavoglia, M. Van Ranst, J. Virol. 80, 3801-3810 (2006)
37. V.P. Le, Y.C. Chung, K. Kim, S.I. Chung, I. Lim, W. Kim, J. Med. Virol. 82, 886-896 (2010)
38. V. Gouvea, R.I. Glass, P. Woods, K. Taniguchi, H.F. Clark, B. Forrester, Z.Y. Fang, J. Clin. Microbiol. 28, 276-282 (1990)
39. J.R. Gentsch, R.I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B.K. Das, M.K. Bhan, J. Clin. Microbiol. 30, 1365-1373 (1992)
40. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, D.G. Higgins, Nucleic Acids Res. 25, 4876-4882 (1997)
41. N. Saitou, M. Nei, Mol. Biol. Evol. 4, 406-425 (1987)
42. J. Felsenstein, PHYLIP version 3.5c (phylogeny inference package), Department of Genetics, University of Washington 1993
43. T.H. Jukes, C.R. Cantor, in Evolution of Protein Molecules. ed. by H.N. Munro. Mammalian Protein Metabolism (Academic Press, New York, 1969) pp. 21-132
44. J. Felsenstein, Evolution 39, 783-791 (1985)
45. S. Ghosh, V. Varghese, S. Samajdar, S.K. Bhattacharya, N. Kobayashi, T.N. Naik, Arch. Virol. 151, 1329-1344 (2006)
46. M. Rahman, R. Sultana, G. Ahmed, S. Nahar, Z.M. Hassan, F. Saiada, G. Podder, A.S. Faruque, A.K. Siddique, D.A. Sack, J. Matthijnssens, M. Van Ranst, T. Azim, Emerg. Infect. Dis. 13, 18-24 (2007)
47. J. Matthijnssens, M. Ciarlet, M. Rahman, H. Attoui, K. Banyai, M.K. Estes, J.R. Gentsch, M. Iturriza-Gomara, C.D. Kirkwood, V. Martella, P.P. Mertens, O. Nakagomi, J.T. Patton, F.M. Ruggeri, L.J. Saif, N. Santos, A. Steyer, K. Taniguchi, U. Desselberger, M. Van Ranst, Arch. Virol. 153, 1621-1629 (2008)
48. S. Ghosh, N. Kobayashi, S. Nagashima, M. Chawla-Sarkar, T.Krishnan, B.Ganesh, T.N. Naik, Virus Genes 40, 382-388 (2010)