The elusive third subunit IIa of the bacterial B-type Oxidases: The enzyme from the Hyperthermophile Aquifex aeolicus

PLoS ONE

Volumn 6, Issue 6, 2011, Pages

  Prunetti, Laurence ^a   Brugna, Myriam ^a,b   Lebrun, Régine ^a   Giudici Orticoni, Marie Thérèse ^a   Guiral, Marianne ^a  

^a CNRS   (France)

^b AIX MARSEILLE UNIVERSITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; B TYPE OXIDASE SUBUNIT IIA; BACTERIAL ENZYME; CYTOCHROME C OXIDASE; MEMBRANE PROTEIN; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; OXIDOREDUCTASE;

AMINO TERMINAL SEQUENCE; AQUIFEX AEOLICUS; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; COXA2 GENE; COXB2 GENE; ENZYME STRUCTURE; GENE SEQUENCE; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN DOMAIN; PROTEIN FAMILY; AMINO ACID SEQUENCE; CHEMISTRY; GENETICS; METABOLISM; MOLECULAR GENETICS; PROTEIN SUBUNIT;

AQUIFEX AEOLICUS; BACTERIA (MICROORGANISMS); THERMUS THERMOPHILUS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PROTEIN SUBUNITS;

EID: 79959687305     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021616     Document Type: Article

References (41)

1. García-Horsman JA, Barquera B, Rumbley J, Ma J, Gennis RB, (1994) The superfamily of heme-copper respiratory oxidases. J Bacteriol 176: 5587-600.
2. Pereira MM, Santana M, Teixeira M, (2001) A novel scenario for the evolution of haem-copper oxygen reductases. Biochim Biophys Acta 1505: 185-208.
3. Hemp J, Gennis RB, (2008) Diversity of the heme-copper superfamily in Archaea: Insights from genomics and structural modelling. Results Probl Cell Differ 45: 1-31.
4. Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, et al. (1998) The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature 392: 353-358.
5. Guiral M, Prunetti L, Lignon S, Lebrun R, Moinier D, et al. (2009) New insights into the respiratory chains of the chemolithoautotrophic and hyperthermophilic bacterium Aquifex aeolicus. J Proteome Res 8: 1717-1730.
6. Prunetti L, Infossi P, Brugna M, Ebel C, Giudici-Orticoni MT, et al. (2010) New functional sulfide oxidase-oxygen reductase supercomplex in the membrane of the hyperthermophilic bacterium Aquifex aeolicus. J Biol Chem 285: 41815-41826.
7. Soulimane T, Buse G, Bourenkov GP, Bartunik HD, Huber R, et al. (2000) Structure and mechanisms of the abberant ba3-cytochrome c oxidase from Thermus thermophilus. EMBO J 19: 1766-1776.
8. Soulimane T, Than ME, Dewor M, Huber R, (2000) Primary structure of a novel subunit in ba3-cytochrome c oxidase from Thermus thermophilus. Protein Sci 9: 2068-2073.
9. Veríssimo AF, Pereira MM, Melo AM, Hreggvidsson GO, Kristjansson JK, et al. (2007) A ba3 oxygen reductase from the thermohalophilic bacterium Rhodothermus marinus. FEMS Microbiol Lett 269: 41-47.
10. Nikaido K, Noguchi S, Sakamoto J, Sone N, (1998) The cbaAB genes for bo3-type cytochrome c oxidase in Bacillus stearothermophilus. Biochim Biophys Acta 1397: 262-267.
11. Nikaido K, Sakamoto J, Noguchi S, Sone N, (2000) Over-expression of cbaAB genes of Bacillus stearothermophilus produces a two-subunit SoxB-type cytochrome c oxidase with proton pumping activity. Biochim Biophys Acta 1456: 35-44.
12. Ducluzeau AL, (2009) Origine enzymatique de la respiration aérobie. PhD thesis, Université de Provence, Marseille, France.
13. Keightley JA, Zimmermann BH, Mather MW, Springer P, Pastuszyn A, et al. (1995) Molecular genetic and protein chemical characterization of the cytochrome ba3 from Thermus thermophilus HB8. J Biol Chem 270: 20345-20358.
14. Hunsicker-Wang LM, Pacoma RL, Chen Y, Fee JA, Stout CD, (2005) A novel cryoprotection scheme for enhancing the diffraction of crystals of recombinant cytochrome ba3 oxidase from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr 61: 340-343.
15. Lübben M, Morand K, (1994) Novel prenylated hemes as cofactors of cytochrome oxidases. J Biol Chem 269: 21473-21479.
16. Brochier-Armanet C, Talla E, Gribaldo S, (2009) The multiple evolutionary histories of dioxygen reductases: implications for the origin and evolution of aerobic respiration. Mol Biol Evol 26: 285-297.
17. Nunoura T, Sako Y, Wakagi T, Uchida A, (2003) Regulation of the aerobic respiratory chain in the facultative aerobic and hyperthermophilic archaeon Pyrobaculum oguniense. Microbiology 149: 673-688.
18. Ducluzeau AL, van Lis R, Duval S, Schoepp-Cothenet B, Russell MJ, et al. (2009) Was nitric oxide the first deep electron sink? Trends Biochem Sci 34: 9-15.
19. Mattar S, Engelhard M, (1997) Cytochrome ba3 from Natronobacterium pharaonis. An archaeal four-subunit cytochrome-c-type oxidase. Eur J Biochem 250: 332-341.
20. Scharf B, Wittenberg R, Engelhard M, (1997) Electron transfer proteins from the haloalkaliphilic archaeon Natronobacterium pharaonis: possible components of the respiratory chain include cytochrome bc and a terminal oxidase cytochrome ba3. Biochemistry 36: 4471-4479.
21. Ishikawa R, Ishido Y, Tachikawa A, Kawasaki H, Matsuzawa H, et al. (2002) Aeropyrum pernix K1, a strictly aerobic and hyperthermophilic archaeon, has two terminal oxidases, cytochrome ba3 and cytochrome aa3. Arch Microbiol 179: 42-49.
22. Lübben M, Warne A, Albracht SP, Saraste M, (1994) The purified SoxABCD quinol oxidase complex of Sulfolobus acidocaldarius contains a novel haem. Mol Microbiol 13: 327-335.
23. Snel B, Bork P, Huynen M, (2000) Genome evolution. Gene fusion versus gene fission. Trends Genet 16: 9-11.
24. Falb M, Pfeiffer F, Palm P, Rodewald K, Hickmann V, et al. (2005) Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis. Genome Res 15: 1336-1343.
25. Schütz M, Brugna M, Lebrun E, Baymann F, Huber R, et al. (2000) Early evolution of cytochrome bc complexes. J Mol Biol 300: 663-675.
26. Zickermann V, Angerer H, Ding MG, Nübel E, Brandt U, (2010) Small single transmembrane domain (STMD) proteins organize the hydrophobic subunits of large membrane protein complexes. FEBS Lett 584: 2516-2525.
27. Shi LX, Schröder WP, (2004) The low molecular mass subunits of the photosynthetic supracomplex, photosystem II. Biochim Biophys Acta 1608: 75-96.
28. Takahashi Y, Rahire M, Breyton C, Popot JL, Joliot P, et al. (1996) The chloroplast ycf7 (petL) open reading frame of Chlamydomonas reinhardtii encodes a small functionally important subunit of the cytochrome b6f complex. EMBO J 15: 3498-3506.
29. Berthold DA, Schmidt CL, Malkin R, (1995) The deletion of petG in Chlamydomonas reinhardtii disrupts the cytochrome bf complex. J Biol Chem 270: 29293-29298.
30. Hager M, Biehler K, Illerhaus J, Ruf S, Bock R, (1999) Targeted inactivation of the smallest plastid genome-encoded open reading frame reveals a novel and essential subunit of the cytochrome b6f complex. EMBO J 18: 5834-5842.
31. Rodgers S, Moser C, Martinez-Julvez M, Sinning I, (2000) Deletion of the 6-kDa subunit affects the activity and yield of the bc1 complex from Rhodovulum sulfidophilum. Eur J Biochem 267: 3753-3761.
32. Nowaczyk MM, Wulfhorst H, Ryan CM, Souda P, Zhang H, et al. (2011) NdhP and NdhQ: two novel small subunits of the cyanobacterial NDH-1 complex. Biochemistry 50: 1121-1124.
33. Otten MF, Stork DM, Reijnders WNM, Westerhoff HV, Van Spanning RJM, (2001) Regulation of expression of terminal oxidases in Paracoccus denitrificans. Eur J Biochem 268: 2486-2497.
34. Zimmermann BH, Nitsche CI, Fee JA, Rusnak F, Münck E, (1988) Properties of a copper-containing cytochrome ba3: a second terminal oxidase from the extreme thermophile Thermus thermophilus. Proc Natl Acad Sci USA 85: 5779-5783.
35. Giuffré A, Forte E, Antonini G, D'Itri E, Brunori M, et al. (1999) Kinetic properties of the ba3-oxidase from Thermus thermophilus: effect of temperature. Biochemistry 38: 1057-1065.
36. Janzon J, Ludwig B, Malatesta F, (2007) Electron transfer kinetics of soluble fragments indicate a direct interaction between complex III and the caa3 oxidase in Thermus thermophilus. IUBMB Life 59: 563-569.
37. Soulimane T, von Walter M, Hof P, Than ME, Huber R, et al. (1997) Cytochrome-c552 from Thermus thermophilus: a functional and crystallographic investigation. Biochem Biophys Res Commun 237: 572-576.
38. Schägger H, (2006) Tricine-SDS-PAGE. Nat Protoc 1: 16-22.
39. Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
40. Schwede T, Kopp J, Guex N, Peitsch MC, (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res 31: 3381-3385.
41. Arnold K, Bordoli L, Kopp J, Schwede T, (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.