Cytochrome ba3 from natronbacterium pharaonis an. Archaeal four subunit cytochrom-c-type oxidase

European Journal of Biochemistry

Volumn 250, Issue 2, 1997, Pages 332-341

  Mattar, Stephan ^a   Engelhard, Martin ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PHYSIOLOGY   (Germany)

Author keywords

Archaea; Cytochrome ba3; Natronobacterium pharaonis; Proton pump; Terminal oxidase

Indexed keywords

CYTOCHROME C OXIDASE; PROTON PUMP; CYTOCHROME B; CYTOCHROME BA3;

ARCHAEBACTERIUM; ARTICLE; ENZYME STRUCTURE; NONHUMAN; PRIORITY JOURNAL; AMINO ACID SEQUENCE; CHEMISTRY; CLASSIFICATION; ENZYMOLOGY; GENETICS; MOLECULAR GENETICS; MOLECULAR WEIGHT; OPERON; PHYLOGENY;

AMINO ACID SEQUENCE; ARCHAEA; CYTOCHROME B GROUP; ELECTRON TRANSPORT COMPLEX IV; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OPERON; PHYLOGENY;

EID: 0031282998     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1997.0332a.x     Document Type: Article

References (50)

1. Babcock, G. T. & Wikström, M. (1992) Oxygen activation and the conservation of energy in cell respiration, Nature 356, 301-309.
2. Trumpower, B. L. & Gennis, R. B. (1994) Energy transduction by cytochrome complexes in mitochondrial and bacterial respiration: The enzymology of coupling electron transfer reactions to transmembrane proton translocation, Annu. Rev. Biochem. 63, 675-716.
3. García-Horsman, J. A., Barquera, B., Rumbley, J., Ma, J. & Gennis, R. B. (1994) The superfamily of heme-copper respiratory oxidases, J. Bacteriol. 176, 5587-5600.
4. van der Oost, J., De Boer, A. P. N., De Gier, J.-W. L., Zumft, W. G., Stouthamer, A. H. & Van Spanning, R. J. M. (1994) The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase, FEMS Microbiol. Lett. 121, 1-10.
5. 3 and cytochrome bo, J. Bioenerg. Biomembr. 25, 121-136.
6. Thomas, J. W., Puustinen, A., Alben, J. O., Gennis, R. B. & Wikström, M. (1993) Substitution of asparagine for aspartate-135 in subunit I of the cytochrome bo ubiquinol oxidase of Escherichia coli eliminates proton-pumping activity, Biochemistry 32, 10923-10928.
7. Fetter, J. R., Qian, J., Shapleigh, J., Thomas, J. W., García-Horsman, A., Schmidt, E., Hosler, J., Babcock, G. T., Gennis, R. B. & Ferguson-Miller, S. (1995) Possible proton relay pathways in cytochrome c oxidase, Proc. Natl Acad. Sci. USA 92, 1604-1608.
8. 0 ubiquinol oxidase of Escherichia coli: Second-site mutations in subunit I that restore proton pumping in the mutant Asp135→Asn, Biochemistry 34, 4428-4433.
9. Iwata, S., Ostermeier, C., Ludwig, B. & Michel, H. (1995) Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans, Nature 376, 660-669.
10. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. & Yoshikawa, S. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å, Science 272, 1136-1144.
11. Wikström, M., Bogachev, A., Finel, M., Morgan, J. E., Puustinen, A., Raitio, M., Verkhovskaya, M. & Verkhovsky, M. I. (1994) Mechanism of proton translocation by the respiratory oxidases: The histidine cycle, Biochim. Biophys. Acta 1187, 106-111.
12. Hellwig, P., Rost, B., Kaiser, U., Ostermeier, C., Michel, H. & Mäntele, W. (1996) Carboxyl group protonation upon reduction of the Paracoccus denitrificans cytochrome c oxidase: direct evidence by FTIR spectroscopy, FEBS Lett. 385, 53-57.
13. Castresana, J., Lübben, M., Saraste, M. & Higgins, D. G. (1994) Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen, EMBO J. 13, 2516-2525.
14. Preisig, O., Anthamatten, D. & Hennecke, H. (1993) Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis, Proc. Natl Acad. Sci. USA 90, 3309-3313.
15. Saraste, M. & Castresana, J. (1994) Cytochrome oxidase evolved by tinkering with denitrification enzymes, FEBS Lett. 341, 1-4.
16. Castresana, J. & Saraste, M. (1995) Evolution of energetic metabolism: The respiration-early hypothesis, Trends Biochem. Sci. 20, 443-448.
17. Lübben, M. (1995) Cytochromes of archaeal electron transfer chains, Biochim. Biophys. Acta Bio-Energetics 1229, 1-22.
18. Schäfer, G., Purschke, W. & Schmidt, C. L. (1996) On the origin of respiration: electron transport proteins from archaea to man, FEMS Microbiol. Rev. 18, 173-188.
19. Lübben, M. Kolmerer, B. & Saraste, M. (1992) An archaebacterial terminal oxidase combines core structures of two mitochondrial respiratory complexes, EMBO J. 11, 805-812.
20. Lübben, M., Arnaud, S., Castresana, J., Warne, A., Albracht, S. P. J. & Saraste, M. (1994) A second terminal oxidase in Sulfolobus acidocaldarius, Eur. J. Biochem. 224, 151-159.
21. 3 gene from the archaeon (Archaebacterium) Halobacterium halobium, Biochem. Biophys. Res. Commun. 181, 316-322.
22. Scharf, B. & Engelhard, M. (1993) Halocyanin, an archaebacterial blue copper protein (type I) from Natronobacterium pharaonis, Biochemistry 32, 12894-12900.
23. 3, Biochemisty 36, 4471-4479.
24. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989) Molecular cloning: a laboratory manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor NY.
25. Charlebois, R. L., Hofman, J. D., Schalkwyk, L. C., Lam, W. L. & Doolittle, W. F. (1989) Genome mapping in halobacteria, Can. J. Microbiol. 35, 21-29.
26. Birnboim, H. C. & Doly, J. (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA, Nucleic Acids Res. 7, 1513-1523.
27. Langridge, J., Langridge, P. & Bergquist, B. L. (1980) Extraction of nucleic acids from agarose gels, Anal. Biochem. 103, 264-271.
28. Wang, K., Koop, B. F. & Hood, L. (1994) A simple method using T4 DNA polymerase to clone polymerase chain reaction products, BioTechniques 17, 236-238.
29. Feinberg, A. P. & Vogelstein, B. (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity, Anal. Biochem. 132, 6-13.
30. Chomczynski, P. & Qasba, P. K. (1984) Alkaline transfer of DNA to plastic membrane, Biochem. Biophys. Res. Commun. 122, 340-344.
31. Chomczynski, P. & Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction, Anal. Biochem. 162, 156-159.
32. Seidel, R., Scharf, B., Gautel, M., Kleine, K., Oesterhelt, D. & Engelhard, M. (1995) The primary structure of sensory rhodopsin II: A member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II, Proc. Natl Acad. Sci. USA 92, 3036-3040.
33. Kawasaki, E. S., Clark, S. S., Coyne, M. Y., Smith, S. D., Champlin, R., Witte, O. N. & McCormick, F. P. (1988) Diagnosis of chronic myeloid and acute lymphocytic leukemias by detection of leukemia-specific mRNA sequences amplified in vitro, Proc. Natl Acad. Sci. USA 85, 5698-5702.
34. Felsenstein, J. (1989) PHYLIP - phylogeny interference package (version 3.2), Cladistics 5, 164-166.
35. Dayhoff, M. O. (1978) Atlas of protein sequence and structure, National Biomedical Research Foundation, Washington DC.
36. Scharf, B. & Engelhard, M. (1994) Blue halorhodopsin from Natronobacterium pharaonis: Wavelength regulation by anions, Biochemistry 33, 6387-6393.
37. Berry, E. A. & Trumpower, B. L. (1987) Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra, Anal. Biochem. 161, 1-15.
38. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J. & Klenk, D. C. (1985) Measurement of protein using bicinchoninic acid, Anal. Biochem. 150, 76-85.
39. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature 227, 680-685.
40. Schägger, H. & von Jagow, G. (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa, Anal. Biochem. 166, 368-379.
41. Lübben, M., Warne, A., Albracht, S. P. J. & Saraste, M. (1994) The purified SoxABCD quinol oxidase complex of Sulfolobus acidocaldarius contains a novel haem, Mol. Microbiol. 13, 327-335.
42. Schägger, H. & von Jagow, G. (1991) Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form, Anal. Biochem. 199, 223-231.
43. Eckerskorn, C. & Lottspeich, F. (1989) Internal amino acid sequence analysis of proteins separated by gel electrophoresis after tryptic digestion in polyacrylamide matrix, Chromatographia 28, 92-94.
44. 3 from Thermus thermophilus HB8, J. Biol. Chem. 270, 20345-20358.
45. Ramirez, C., Shimmin, L. C., Leggatt, P. & Matheson A. T. (1994) Structure and transcription of the L11-L1-L10-L12 ribosomal protein gene operon from the extreme thermophile archaeon Sulfolobus acidocaldarius, J. Mol. Biol. 244, 242-249.
46. Soppa, J. (1994) Compilation of halobacterial protein coding genes, the halobacterial codon usage table and its use, System. Appl. Microbiol. 16, 725-733.
47. Mattar, S., Scharf, B., Kent, S. B. H., Rodewald, K., Oesterhelt, D. & Engelhard, M. (1994) The primary structure of halocyanin, an archaeal blue copper protein, predicts a lipid anchor for membrane fixation, J. Biol. Chem. 269, 14939-14945.
48. Castresana, J., Lübben, M. & Saraste, M. (1995) New archaebacterial genes coding for redox proteins: Implications for the evolution of aerobic metabolism, J. Mol. Biol. 250, 202-210.
49. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. & Yoshikawa, S. (1995) Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 Å, Science 269, 1069-1074.
50. Zaccai, G. & Eisenberg, H. (1990) Halophilic proteins and the influence of solvent on protein stabilization, Trends Biochem. Sci. 15, 333-337.