메뉴 건너뛰기




Volumn , Issue , 2010, Pages 297-313

Molecular identification of anaerobic rumen fungi

Author keywords

Actin; Anaerobic and aerobic chytrids; Beta tubulin; Chytridiomycota; Elongation factor 1 alpha; Neocallimastigomycota; Ribosomal DNA; Strain typing

Indexed keywords


EID: 79959678066     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-05042-8_14     Document Type: Chapter
Times cited : (13)

References (64)
  • 3
    • 84900039340 scopus 로고
    • A general purpose classification of the fungi
    • Ainsworth GC (1966) A general purpose classification of the fungi. Bibl System Mycol 4:1-4
    • (1966) Bibl System Mycol , vol.4 , pp. 1-4
    • Ainsworth, G.C.1
  • 5
    • 0003016687 scopus 로고
    • Concerted evolution of multigene families
    • Nei M, Koehn RK eds, Sinauer Associated, Sunderland, MA
    • Arnheim N (1983) Concerted evolution of multigene families. In: Nei M, Koehn RK (eds) Evolution of genes and proteins. Sinauer Associated, Sunderland, MA, pp 38-61
    • (1983) Evolution of Genes and Proteins , pp. 38-61
    • Arnheim, N.1
  • 6
    • 0017960995 scopus 로고
    • Taxonomy and phylogeny of chytrids
    • Barr D J S (1978) Taxonomy and phylogeny of chytrids. Biosystems 10:153-165
    • (1978) Biosystems , vol.10 , pp. 153-165
    • Barr, D.J.S.1
  • 7
    • 0001635857 scopus 로고
    • Morphology and development of rumen fungi: Neocallimastix sp., Piromyces communis, and Orpinomyces bovis gen. nov., sp. nov
    • Barr D J S, Kudo H, Jakober KD, Cheng KJ (1989) Morphology and development of rumen fungi: Neocallimastix sp., Piromyces communis, and Orpinomyces bovis gen. nov., sp. nov. Can J Bot 67:2815-2824
    • (1989) Can J Bot , vol.67 , pp. 2815-2824
    • Barr, D.J.S.1    Kudo, H.2    Jakober, K.D.3    Cheng, K.J.4
  • 8
    • 0002384905 scopus 로고
    • Cell wall composition and other biochemical markers in fungal phylogeny
    • Harborne JB ed, Academic Press, New York
    • Bartnicki-Garcia S (1970) Cell wall composition and other biochemical markers in fungal phylogeny. In: Harborne JB (ed) Phytochemical phylogeny. Academic Press, New York, pp 81-103
    • (1970) Phytochemical Phylogeny , pp. 81-103
    • Bartnicki-Garcia, S.1
  • 9
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J (2005) A review of long-branch attraction. Cladistics 21(2):163-193
    • (2005) Cladistics , vol.21 , Issue.2 , pp. 163-193
    • Bergsten, J.1
  • 10
    • 0026590102 scopus 로고
    • Molecular evolution of the fungi: Relationship of the basidiomycetes, ascomycetes, and chytridiomycetes
    • Bowman BH, Taylor JW, Brownlee AG, Lee J, Lu S, White TJ (1992) Molecular evolution of the fungi: relationship of the basidiomycetes, ascomycetes, and chytridiomycetes. Mol Biol Evol 9:285-296
    • (1992) Mol Biol Evol , vol.9 , pp. 285-296
    • Bowman, B.H.1    Taylor, J.W.2    Brownlee, A.G.3    Lee, J.4    Lu, S.5    White, T.J.6
  • 11
    • 0001145662 scopus 로고
    • Untersuchungen über die im Wiederkäuermagen vorkommenden Protozoen
    • Braune R (1913) Untersuchungen über die im Wiederkäuermagen vorkommenden Protozoen. Arch Protistenk 32:111-170
    • (1913) Arch Protistenk , vol.32 , pp. 111-170
    • Braune, R.1
  • 12
  • 14
    • 0033981963 scopus 로고    scopus 로고
    • Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal ITS1 and 18S rRNA
    • Brookman JL, Mennim G, Trinci AP, Theodorou MK, Tuckwell DS (2000) Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal ITS1 and 18S rRNA. Microbiology 146:393-403
    • (2000) Microbiology , vol.146 , pp. 393-403
    • Brookman, J.L.1    Mennim, G.2    Trinci, A.P.3    Theodorou, M.K.4    Tuckwell, D.S.5
  • 15
    • 33744756956 scopus 로고    scopus 로고
    • Problems with DNA barcodes for species delimitation: 'Ten species' of Astraptes fulgerator reassessed (Lepidoptera: Hesperiidae)
    • Brower A V Z (2006) Problems with DNA barcodes for species delimitation: 'ten species' of Astraptes fulgerator reassessed (Lepidoptera: Hesperiidae). Syst Biodivers 4:127-132
    • (2006) Syst Biodivers , vol.4 , pp. 127-132
    • Brower, A.V.Z.1
  • 16
    • 22544464155 scopus 로고    scopus 로고
    • Fungal evolution: The case of the vanishing mitochondrion
    • Bullerwell CE, Lang BF (2005) Fungal evolution: the case of the vanishing mitochondrion. Curr Opin Microbiol 8:362-369
    • (2005) Curr Opin Microbiol , vol.8 , pp. 362-369
    • Bullerwell, C.E.1    Lang, B.F.2
  • 17
    • 31344458132 scopus 로고    scopus 로고
    • The unholy trinity: Taxonomy, species delimtiation and DNA barcoding
    • DeSalle R, Egan MG, Siddall M (2005) The unholy trinity: taxonomy, species delimtiation and DNA barcoding. Philos Trans R Soc Lond B Biol Sci 360:1905-1916
    • (2005) Philos Trans R Soc Lond B Biol Sci , vol.360 , pp. 1905-1916
    • DeSalle, R.1    Egan, M.G.2    Siddall, M.3
  • 18
    • 0000701177 scopus 로고
    • Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparisons
    • Doré J, Stahl DA (1991) Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparisons. Can J Bot 69:1964-1971
    • (1991) Can J Bot , vol.69 , pp. 1964-1971
    • Doré, J.1    Stahl, D.A.2
  • 20
    • 34248161638 scopus 로고    scopus 로고
    • A comprehensive DNA sequence library is essential for identification with DNA barcodes
    • Ekrem T, Willassen E, Stur E (2007) A comprehensive DNA sequence library is essential for identification with DNA barcodes. Mol Phylogenet Evol 43:530-542
    • (2007) Mol Phylogenet Evol , vol.43 , pp. 530-542
    • Ekrem, T.1    Willassen, E.2    Stur, E.3
  • 21
    • 0000461280 scopus 로고
    • Confidence limits of phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 22
    • 33748366946 scopus 로고    scopus 로고
    • Differentiation of anaerobic polycentric fungi by rDNA PCR-RFLP
    • Fliegerová K, Mrázek J, Voigt K (2006) Differentiation of anaerobic polycentric fungi by rDNA PCR-RFLP. Folia Microbiol (Praha) 51:273-277
    • (2006) Folia Microbiol (Praha) , vol.51 , pp. 273-277
    • Fliegerová, K.1    Mrázek, J.2    Voigt, K.3
  • 24
    • 0000167965 scopus 로고
    • Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution
    • Förster H, Coffey MD, Elwood H, Sogin ML (1990) Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution. Mycologia 82:306-312
    • (1990) Mycologia , vol.82 , pp. 306-312
    • Förster, H.1    Coffey, M.D.2    Elwood, H.3    Sogin, M.L.4
  • 25
    • 0344441394 scopus 로고    scopus 로고
    • Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae
    • Goetze E (2003) Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae. Proc R Soc B 270:2321-2331
    • (2003) Proc R Soc B , vol.270 , pp. 2321-2331
    • Goetze, E.1
  • 26
    • 0023800528 scopus 로고
    • Ultrastructural description of a new chytrid genus of caecum anaerobe, Caecomyces equi gen. nov., sp. nov., assigned to the Neocallimasticaceae
    • Gold JJ, Heath IB, Bauchop T (1988) Ultrastructural description of a new chytrid genus of caecum anaerobe, Caecomyces equi gen. nov., sp. nov., assigned to the Neocallimasticaceae. BioSystems 21:403-415
    • (1988) BioSystems , vol.21 , pp. 403-415
    • Gold, J.J.1    Heath, I.B.2    Bauchop, T.3
  • 27
    • 0001630411 scopus 로고
    • Assignment of the rumen anaerobe Neocallimastix frontalis to the Spizellomycetales (Chytridiomycetes) on the basis of its polyflagellate zoospore ultrastructure
    • Heath IB, Bauchop T, Skipp RA (1983) Assignment of the rumen anaerobe Neocallimastix frontalis to the Spizellomycetales (Chytridiomycetes) on the basis of its polyflagellate zoospore ultrastructure. Can J Bot 61:295-307
    • (1983) Can J Bot , vol.61 , pp. 295-307
    • Heath, I.B.1    Bauchop, T.2    Skipp, R.A.3
  • 28
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • Hebert P D N, Ratnasingham S, de Waard JR (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc B 270(Suppl):96-99
    • (2003) Proc R Soc B , vol.270 , Issue.SUPPL. , pp. 96-99
    • Hebert, P.D.N.1    Ratnasingham, S.2    De Waard, J.R.3
  • 29
    • 6944255373 scopus 로고    scopus 로고
    • Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
    • Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101:14812-14817
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 14812-14817
    • Hebert, P.D.1    Penton, E.H.2    Burns, J.M.3    Janzen, D.H.4    Hallwachs, W.5
  • 31
    • 0022446243 scopus 로고
    • The molecular evolution of actin
    • Hightower RC, Meagher RB (1986) The molecular evolution of actin. Genetics 114:315-332
    • (1986) Genetics , vol.114 , pp. 315-332
    • Hightower, R.C.1    Meagher, R.B.2
  • 32
    • 0000591419 scopus 로고
    • Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from malaysia
    • Ho Y, Barr D (1995) Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from malaysia. Mycologia 87:655-677
    • (1995) Mycologia , vol.87 , pp. 655-677
    • Ho, Y.1    Barr, D.2
  • 33
    • 0028305723 scopus 로고
    • Isozyme analysis of anaerobic rumen fungi and their relationship to aerobic chytrids
    • Ho YW, Khoo IY, Tan SG, Abdullah N, Jalaludin S, Kudo H (1994) Isozyme analysis of anaerobic rumen fungi and their relationship to aerobic chytrids. Microbiology 140:1495-1504
    • (1994) Microbiology , vol.140 , pp. 1495-1504
    • Ho, Y.W.1    Khoo, I.Y.2    Tan, S.G.3    Abdullah, N.4    Jalaludin, S.5    Kudo, H.6
  • 38
    • 0000244125 scopus 로고
    • The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota II. Cladistic analysis of structural data and description of Neocallimasticales ord. nov
    • Li J, Heath IB, Packer L (1993) The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota II. Cladistic analysis of structural data and description of Neocallimasticales ord. nov. Can J Bot 71:393-407
    • (1993) Can J Bot , vol.71 , pp. 393-407
    • Li, J.1    Heath, I.B.2    Packer, L.3
  • 39
    • 0002033905 scopus 로고
    • Die parasitischen Protozoen des Wiederkäuermagens
    • Liebetanz E (1910) Die parasitischen Protozoen des Wiederkä uermagens. Arch Protistenk 19:19-90
    • (1910) Arch Protistenk , vol.19 , pp. 19-90
    • Liebetanz, E.1
  • 40
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: Error rates based on comprehensive sampling
    • Meyer CP, Paulay G (2005) DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 3:e422
    • (2005) PLoS Biol , vol.3
    • Meyer, C.P.1    Paulay, G.2
  • 41
    • 0023674569 scopus 로고
    • The ultrastructure and possible relationships of four obligate anaerobic chytridiomycete fungi from the rumen of sheep
    • Munn EA, Orpin CG, Greenwood CA (1988) The ultrastructure and possible relationships of four obligate anaerobic chytridiomycete fungi from the rumen of sheep. Biosystems 22:67-81
    • (1988) Biosystems , vol.22 , pp. 67-81
    • Munn, E.A.1    Orpin, C.G.2    Greenwood, C.A.3
  • 42
    • 45749142504 scopus 로고    scopus 로고
    • Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification
    • Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson K (2008) Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinform 4:193-201
    • (2008) Evol Bioinform , vol.4 , pp. 193-201
    • Nilsson, R.H.1    Kristiansson, E.2    Ryberg, M.3    Hallenberg, N.4    Larsson, K.5
  • 43
    • 0016292398 scopus 로고
    • The rumen flagellate Callimastix frontalis: Does sequestration occur?
    • Orpin CG (1974) The rumen flagellate Callimastix frontalis: does sequestration occur? J Gen Microbiol 84:395-398
    • (1974) J Gen Microbiol , vol.84 , pp. 395-398
    • Orpin, C.G.1
  • 44
    • 0016715558 scopus 로고
    • Studies on the rumen flagellate Neocallimastix frontalis
    • Orpin CG (1975) Studies on the rumen flagellate Neocallimastix frontalis. J Gen Microbiol 91:249-262
    • (1975) J Gen Microbiol , vol.91 , pp. 249-262
    • Orpin, C.G.1
  • 45
    • 0017115241 scopus 로고
    • Studies on the rumen flagellate Sphaeromonas communis
    • Orpin CG (1976) Studies on the rumen flagellate Sphaeromonas communis. J Gen Microbiol. 94:270-280
    • (1976) J Gen Microbiol , vol.94 , pp. 270-280
    • Orpin, C.G.1
  • 46
    • 0017619244 scopus 로고
    • Invasion of plant tissue in the rumen by the flagellate Neocallimastix frontalis
    • Orpin CG (1977) Invasion of plant tissue in the rumen by the flagellate Neocallimastix frontalis. J Gen Microbiol 98:423-430
    • (1977) J Gen Microbiol , vol.98 , pp. 423-430
    • Orpin, C.G.1
  • 47
    • 0013669625 scopus 로고
    • Neocallimastix patriciarum: A new member of the Neocallimasticaceae inhabiting the sheep rumen
    • Orpin C, Munn E (1986) Neocallimastix patriciarum: a new member of the Neocallimasticaceae inhabiting the sheep rumen. Trans Br Mycol Soc 86:178-181
    • (1986) Trans Br Mycol Soc , vol.86 , pp. 178-181
    • Orpin, C.1    Munn, E.2
  • 48
    • 0034871597 scopus 로고    scopus 로고
    • Cyllamyces aberensis gen. nov sp. nov., a new anaerobic gut fungus with branched sporangiophores isolated from cattle
    • Ozkose E, Thomas BJ, Davies DR, Griffith GW, Theodorou MK (2001) Cyllamyces aberensis gen. nov sp. nov., a new anaerobic gut fungus with branched sporangiophores isolated from cattle. Can J Bot 79:666-673
    • (2001) Can J Bot , vol.79 , pp. 666-673
    • Ozkose, E.1    Thomas, B.J.2    Davies, D.R.3    Griffith, G.W.4    Theodorou, M.K.5
  • 49
    • 16244409178 scopus 로고    scopus 로고
    • Penicillium subgenus Penicillium: New taxonomic schemes, mycotoxins and other extrolites
    • Samson RA, Frisvad JC (eds) (2004) Penicillium subgenus Penicillium: new taxonomic schemes, mycotoxins and other extrolites. Stud Mycol 49:1-251
    • (2004) Stud Mycol , vol.49 , pp. 1-251
    • Samson, R.A.1    Frisvad, J.C.2
  • 51
    • 2442695931 scopus 로고    scopus 로고
    • Identification of Penicillium species using the internal transcribed spacer (ITS) regions
    • Rossen L, Rubio V, Dawson MT, Frisvad JC eds, European Commission, Brussels, Belgium
    • Skouboe P, Boysen M, Pedersen LH, Frisvad JC, Rossen L (1996) Identification of Penicillium species using the internal transcribed spacer (ITS) regions. In: Rossen L, Rubio V, Dawson MT, Frisvad JC (eds) Fungal identification techniques. European Commission, Brussels, Belgium, pp 160-164
    • (1996) Fungal Identification Techniques , pp. 160-164
    • Skouboe, P.1    Boysen, M.2    Pedersen, L.H.3    Frisvad, J.C.4    Rossen, L.5
  • 52
    • 0033503770 scopus 로고    scopus 로고
    • Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species
    • Skouboe P, Frisvad JC, Taylor JW, Lauritsen D, Boysen M, Rossen L (1999) Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species. Mycol Res 103:873-881
    • (1999) Mycol Res , vol.103 , pp. 873-881
    • Skouboe, P.1    Frisvad, J.C.2    Taylor, J.W.3    Lauritsen, D.4    Boysen, M.5    Rossen, L.6
  • 53
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21):2688-2690
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 54
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML webservers
    • Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML webservers. Systematic Biology 75(5):758-771
    • (2008) Systematic Biology , vol.75 , Issue.5 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 55
    • 0036699139 scopus 로고    scopus 로고
    • Strange fungi with even stranger insides
    • van der Giezen M (2002) Strange fungi with even stranger insides. Mycologist 16:129-131
    • (2002) Mycologist , vol.16 , pp. 129-131
    • Van Der Giezen, M.1
  • 56
    • 0010876825 scopus 로고
    • Etude sur la morphologie, le cycle évolutif et la position systématique de Callimastix cyclopis Weissenberg, 1912
    • Vavra J, Joyón L (1966) Etude sur la morphologie, le cycle évolutif et la position systématique de Callimastix cyclopis Weissenberg, 1912. Protistologica 2:5-16
    • (1966) Protistologica , vol.2 , pp. 5-16
    • Vavra, J.1    Joyón, L.2
  • 57
    • 0000966280 scopus 로고
    • Distribution of lysine pathways among fungi: Evolutionary implications
    • Vogel HJ (1964) Distribution of lysine pathways among fungi: evolutionary implications. Am Nat 98:435
    • (1964) Am Nat , vol.98 , pp. 435
    • Vogel, H.J.1
  • 58
    • 0001469338 scopus 로고
    • Neocallimastix hurleyensis sp. nov., an anaerobic fungus from the ovine rumen
    • Webb J, Theodorou MK (1991) Neocallimastix hurleyensis sp. nov., an anaerobic fungus from the ovine rumen. Can J Bot 69:1220-1224
    • (1991) Can J Bot , vol.69 , pp. 1220-1224
    • Webb, J.1    Theodorou, M.K.2
  • 60
    • 0016402072 scopus 로고
    • Alternate host for mosquito parasite Coelomomyces
    • Whisler HC, Zebold SL, Shemanchuk JA (1974) Alternate host for mosquito parasite Coelomomyces. Nature 251:715-716
    • (1974) Nature , vol.251 , pp. 715-716
    • Whisler, H.C.1    Zebold, S.L.2    Shemanchuk, J.A.3
  • 61
    • 0014669335 scopus 로고
    • New concepts of kingdoms or organisms. Evolutionary relations are better represented by new classifications than by the traditional two kingdoms
    • Whittaker RH (1969) New concepts of kingdoms or organisms. Evolutionary relations are better represented by new classifications than by the traditional two kingdoms. Science 163:150-160
    • (1969) Science , vol.163 , pp. 150-160
    • Whittaker, R.H.1
  • 62
    • 34548435753 scopus 로고    scopus 로고
    • DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae)
    • Whitworth TL, Dawson RD, Magalon H, Baudry E (2007) DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae) Proc Bio Sci 274:1731-1739
    • (2007) Proc Bio Sci , vol.274 , pp. 1731-1739
    • Whitworth, T.L.1    Dawson, R.D.2    Magalon, H.3    Baudry, E.4
  • 63
    • 29144475077 scopus 로고    scopus 로고
    • The perils of DNA barcoding and the need for integrative taxonomy
    • Will KW, Mishler BD, Wheeler QD (2005) The perils of DNA barcoding and the need for integrative taxonomy. Syst Biol 54:844-851
    • (2005) Syst Biol , vol.54 , pp. 844-851
    • Will, K.W.1    Mishler, B.D.2    Wheeler, Q.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.