Diversity of anaerobic fungi within cow manure determined by ITS1 analysis

Folia Microbiologica

Volumn 55, Issue 4, 2010, Pages 319-325

  Fliegerova K ^a   Mrazek J ^a   Hoffmann, K ^b   Zabranska J ^c   Voigt, K ^b  

^a INSTITUTE OF ANIMAL PHYSIOLOGY AND GENETICS   (Czech Republic)

^b FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^c INSTITUTE OF CHEMICAL TECHNOLOGY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; FUNGAL RNA; PRIMER DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA; RNA 5.8S; MANURE;

ANAEROBIC GROWTH; ANIMAL; ARTICLE; BIODIVERSITY; CATTLE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FUNGUS; GENETICS; ISOLATION AND PURIFICATION; MANURE; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; RNA GENE; BOVINAE;

ANAEROBIOSIS; ANIMALS; BIODIVERSITY; CATTLE; CLUSTER ANALYSIS; DNA PRIMERS; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FUNGI; GENES, RRNA; MANURE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, FUNGAL; RNA, RIBOSOMAL, 5.8S; SEQUENCE ANALYSIS, DNA;

ANAEROMYCES; CAECOMYCES; CYLLAMYCES; FUNGI; NEOCALLIMASTIGALES; NEOCALLIMASTIX; ORPINOMYCES; PIROMYCES;

EID: 77955129333     PISSN: 00155632     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12223-010-0049-y     Document Type: Article

References (15)

1. Brookman J. L., Mennim G., Trinci A. P. J., Theodorou M. K., Tuckwell D. S.: Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal ITS1 and 18S rRNA. Microbiology146, 393-403 (2000).
2. Chen Y. C., Tsai S. D., Cheng H. L., Chien C. Y., Hu C. Y., Cheng T. Y.: Caecomyces sympodialis sp. nov., a new rumen fungus isolated from Bos indicus. Mycologia99, 125-130 (2007).
3. Edwards J. E., Huws S. A., Kim E. J., Kingston-Smith A. H., Jimenes H. R., Skot K. P., Griffith G. W., McEwan N. R., Theodorou M. K.: Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen. FEMS Microbiol. Ecol. 66, 537-545 (2008).
4. Gardes M., Bruns T. D.: ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizas and rusts. Mol. Ecol. 2, 113-118 (1993).
5. Gold J. J., Heath I. B., Bauchop T.: Ultrastructural description of a new chytrid genus of caecum anaerobe, Caecomyces equi gen. nov. BioSytems125, 311-415 (1988).
6. Griffith G. W., Oskoze E., Theodorou M. K., Davies D. R.: Diversity of anaerobic fungal population in cattle revealed by selective enrichment culture using different carbon sources. Fungal Ecol. 2, 87-97 (2009).
7. Ho Y. W., Barr D. J. S.: Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycologia87, 655-677 (1995).
8. Hoffmann K., Telle S., Walther G., Eckart M., Kirchmair M., Prillinger H. J., Prazenica A., Newcombe G., Dölz F., Papp T., Vágvölgyi C., de Hoog S., Olsson L., Voigt K.: Diversity, genotypic identification, ultrastructural and phylogenetic characterization of zygomycetes from different ecological habitats and climatic regions: limitations and utility of nuclear ribosomal DNA barcode markers, pp. 263-312 in Y. Gherbawy, R. L. Mach, M. Rai (Eds): Current Advances in Molecular Mycology. Nova Science Publishers Inc., New York 2009.
9. Li J., Heath I. B., Packer L.: The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota. II. Cladistic analysis of structural data and description of Neocallimasticales ord. nov. Can. J. Bot. 71, 393-407 (1993).
10. Lockhart R. J., van Dyke M. I., Beadle I. R., Humphreys P., McCarthy A. J.: Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites. Appl. Environ. Microbiol. 72, 5659-5661 (2006).
11. Orpin C. G.: Studies on the rumen flagellate Sphaeromonas communis. J. Gen. Microbiol. 94, 270-280 (1976).
12. Orpin G. C., Joblin K. N.: The rumen anaerobic fungi, pp. 140-195 in P. N. Hobson, C. S. Stewart (Eds): The Rumen Microbial Ecosystem. Elsevier, London 1997.
13. Ozkose M., Thomas B. J., Davies D. R., Griffith G. W., Theodorou M. K.: Cyllamyces aberensis gen. nov., a new anaerobic gut fungus with branched sporangiophores isolated from cattle. Can. J. Bot. 79, 666-673 (2001).
14. Ronquist F., Huelsenbeck J. P.: MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics19, 1572-1574 (2003).
15. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G.: The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25, 4876-4882 (1997).