Parallel imaging microfluidic cytometer

Methods in Cell Biology

Volumn 102, Issue , 2011, Pages 49-75

  Ehrlich, Daniel J ^a   McKenna, Brian K ^a   Evans, James G ^a   Belkina, Anna C ^b   Denis, Gerald V ^b   Sherr, David H ^c   Cheung, Man Ching ^a  

^a BOSTON UNIVERSITY   (United States)

^b BOSTON UNIVERSITY MEDICAL CENTER   (United States)

^c BOSTON UNIVERSITY SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Flow focusing; Fluorescence activated flow cytometry; High content screening; Parallelism; Robotics; Sorting

Indexed keywords

ANIMAL; BOOK; CALIBRATION; CELL COUNT; EARLY DIAGNOSIS; FLOW CYTOMETRY; GENETIC ASSOCIATION; HUMAN; INSTRUMENTATION; METHODOLOGY; MICROFLUIDIC ANALYSIS; ROBOTICS; STATISTICAL ANALYSIS;

ANIMALS; CALIBRATION; CELL COUNT; DATA INTERPRETATION, STATISTICAL; EARLY DETECTION OF CANCER; FLOW CYTOMETRY; GENOME-WIDE ASSOCIATION STUDY; HUMANS; MICROFLUIDIC ANALYTICAL TECHNIQUES; ROBOTICS;

EID: 79959593649     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-374912-3.00003-1     Document Type: Book

References (34)

1. Aborn J.H., El-Difrawy S.A., Novotny M., Gismondi E.A., Lam R., Matsudaira P., McKenna B.K., O'Neil T., Streechon P., Ehrlich D.J. A 768-lane microfabricated system for high-throughput DNA sequencing. Lab Chip 2005, 6:669-674.
2. Bohm, S., Gilbert, J., and Deshpande, M. (2007). Method and apparatus for sorting particles. US Patent No. 7,157,274.
3. Bullen A. Microscopic imaging techniques for drug discovery. Nature Rev. 2008, 7:54-93.
4. Carpenter A.E., Jones T.R., Lamprecht M.R., Clarke C., Kang I.H., Friman O., Guertin D.A., Chang J.H., Lindquist R.A., Moffat J., Golland P., Sabatini D.M. CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol. 2006, 7:R100. Epub 2006 Oct 31.
5. Cheung K., Berardino C., Di M., Schade-Kampmann G., Hebeisen M., Pierzchalski A., Bocsi J., Mittag A., Tarnok A. Microfluidic impedance-based flow cytometry. Cytometry A 2010, 77A:648-666.
6. Ding G.J.F., Fischer P.A., Boltz R.C., Schmidt J.A., Colaianne J.J., Gough A., Rubin R.A., Miller D.K. Characterization and quantitation of NF-κB nuclear translocation induced by interleukin-1 and tumor necrosis factor-α: development and use of a high capacity fluorescence cytometric system. J. Biol. Chem. 1998, 273:28897-28905.
7. Dittrich P.S., Schwille P. An integrated microfluidic system for reaction, high-sensitivity detection, and sorting of fluorescent cells and particles. Anal. Chem. 2003, 75:5767-5774.
8. Edwards B.S., Oprea T., Psossnitz E.R., Sklar L.A. Flow cytometry for high-throughput, high content screening. Curr. Opin. Chem. Biol. 2004, 8:392-398.
9. Eggert U.S., Mitchinson T.J. Small molecule screening by imaging. Curr. Opin. Chem. Biol. 2006, 10:232-237.
10. El-Difrawy S.A., Lam R., Aborn J.H., Novotny M., Gismondi E.A., Matsudaira P., McKenna B.K., O'Neil T., Streechon P., Ehrlich D.J. High throughput system for DNA sequencing. Rev. Sci. Instrum. 2005, 76. 074301-074301-7.
11. Emmelkamp J., Wolbers F., Andersson H., DaCosta R.S., Wilson B.C., Vermes I., Van den Berg A. The potential of autofluorescence for the detection of single living cells for label-free cell sorting in microfluidic systems. Electrophoresis 2004, 25:3740-3745.
12. Fu A.Y., Chou H.P., Spence C., Arnold F.H., Quake S.R. An integrated microfabricated cell sorter. Anal. Chem. 2002, 74:2451-2457.
13. Gawad S., Cheung K., Seger U., Bertsch A., Renaud P. Dielectric spectroscopy in a micromachined flow cytometer: theoretical and practical considerations. Lab Chip 2004, 4:241-251.
14. George T.C., Fanning S.L., Fitzgerald-Bocarsly P., Medeiros R.B., Highfill S., Shimizu Y., Hall B.E., Frost K., Basiji D., Ortyn W.E., Morrissey P.J., Lynch D.H. Quantitative measurement of nuclear translocation events using similarity analysis of multispectral cellular images obtained in flow. J. Immunol. Methods 2006, 311:117-129. Epub 2006 Mar 10.
15. Givan A.L. The sorting of cells. Flow Cytometry: First Principles 2001, Wiley-Liss, Inc, Wilmington, DE, 159-L 174. 2nd ed.
16. Goddard G.R., Sanders C.K., Martin J.C., Kaduchak G., Graves S.W. Analytical performance of an ultrasonic particle focusing flow cytometer. Anal. Chem. 2007, 79:8740-8746.
17. Goedecke N., McKenna B., El-Difrawy S., Carey L., Matsudaira P., Ehrlich D. A high-performance multilane microdevice system designed for the DNA forensics laboratory. Electrophoresis 2004, 25:1678-1686.
18. Gonzales R.C., Woods R.E. Chapter 10: Image segmentation. Digital Image Processing 2008, 689-794. Prentice-Hall, Upper Saddle, NJ. 3rd ed.
19. Gough A.H., Johnston P.A. Requirements, features, and performance of high content screening platforms. Methods Mol. Biol. 2007, 356:41-61.
20. Greenwald R.J., Tumang J.R., Sinha A., Currier N., Cardiff R.D., Rothstein T.L., Faller D.V., Denis G.V. E mu-BRD2 transgenic mice develop B-cell lymphoma and leukemia. Blood 2004, 103:1475-1484.
21. Haney S.A., LaPan P., Pan J., Shang J. High-content screening moves to the front of the line. Drug Discovery Today 2008, 11:889-894.
22. Haynes M.K., Strouse J.J., Walter A., Leitao A., Curpan R.F., Bologa C., Oprea T.I., Prossnitz E.R., Edwards B.S., Sklar L.A., Thompson T.A. Detection of intracellular granularity induction in prostate cancer cell lines by small molecules using the HyperCyt® high-throughput flow cytometry system. J. Biomol. Screen 2009, 14:596-609.
23. Lee S., Howel B.J. High-content screening: emerging hardware and software technologies. Methods Enzymol. 2006, 414:468-483.
24. Lin A., Hosoi A., Ehrlich D.J. Vertical hydrodynamic focusing in microchannels. Biomicrofluidics 2009, 3:14101-14112.
25. McClain M., Culbertson C., Jacobson S., Ramsey M. Flow cytometry of Escherichia coli on microfluidic devices. Anal. Chem. 2001, 73:5334-5338.
26. McCoy J.P. Basic principles in clinical flow cytometry. Flow Cytometry in Clinical Diagnostics 2007, 15-34. American Society for Clinical Pathology Press, Chicago. 4th ed. D.F. Keren, J.P. McCoy, J.L. Carey (Eds.).
27. tMcKenna B.K., Salim H., Bringhurst F.R., Ehrlich D.J. 384-Channel parallel microfluidic cytometer for rare-cell screening. Lab Chip 2009, 9:305-310.
28. Pepperkok R., Ellenberg J. High-throughput fluorescence microscopy for systems biology. Nat. Rev. Cell Biol. 2006, 7:690-696.
29. Shapiro H.M. Chapter 6: Flow sorting. Practical Flow Cytometry 2003, 257-272. Wiley-Liss, Inc, Wilmington, DE. 4th ed.
30. Taylor D.L., Haskins J.R., Giuliano K.A. Assays and applications of high content screening. High Content Screening 2007, 353-434. Humana Press, Totowa, NJ.
31. Wang M.M., Tu E., Raymond D.E., Yang J.M., Zhang H., Hagen N., Dees B., Mercer E.M., Forester A.H., Kariv I., Marchand P.J., Butler W.F. Microfluidic sorting of mammalian cells by optical force switching. Nature Biotech. 2005, 23:83-87.
32. Wheeler D.B., Carpenter A.E., Sabatini D.M. Cell microarrays and RNA interference chip away at gene function. Nature Genetics 2005, 37:s25-s30.
33. Wolff A., Perch-Nielsen I.R., Larsen U.D., Friis P., Goranovic G., Poulsen C.R., Kutter J.P., Telleman P. Integrating advanced functionality in a microfabricated high-throughput fluorescent-activated cell sorter. Lab Chip 2003, 3:22-27.
34. Yi C., Li C.W., Ji S., Yang M. Microfluidics technology for manipulation and analysis of biological cells. Anal. Chim. Acta 2006, 560:1-23.