Biochemical characterization of deblocking aminopeptidases from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1

Bioscience, Biotechnology and Biochemistry

Volumn 75, Issue 6, 2011, Pages 1160-1166

  Jia, Baolei ^a,b   Lee, Sangmin ^b   Pham, Bang Phuong ^b   Kwack, Jae Myeng ^b   Jin, Haifeng ^a   Li, Jian ^a   Wang, Yuhan ^a   Cheong, Gang Won ^b  

^a JILIN UNIVERSITY   (China)

^b Gyeongsang National University   (South Korea)

Author keywords

Deblocking aminopeptidase; Electron microscopy; Hyperthermophilic archaeon; Proteomics

Indexed keywords

AMINO PEPTIDASE; BIOCHEMICAL CHARACTERIZATION; DATA BASE; DEBLOCKING; DODECAMER; GEL-FILTRATION CHROMATOGRAPHY; HYPERTHERMOPHILIC ARCHAEON; N-TERMINALS; NATIVE FORMS; PROTEOMICS; TWO DIMENSIONAL ELECTROPHORESIS;

AMINO ACIDS; ELECTROPHORESIS; ESCHERICHIA COLI; GEL PERMEATION CHROMATOGRAPHY; GENES; MICROORGANISMS; MOLECULAR BIOLOGY; OLIGOMERS;

PROTEINS;

ALANYL ALANYL ALANINE; ALANYL-ALANYL-ALANINE; AMINOPEPTIDASE; ARCHAEAL PROTEIN; ISOENZYME; OLIGOPEPTIDE; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM TRANSFORMATION; CHEMISTRY; ELECTRON MICROSCOPY; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GEL CHROMATOGRAPHY; GENE EXPRESSION; GENETICS; HEAT; MASS SPECTROMETRY; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PLASMID; POLYMERIZATION; SEQUENCE HOMOLOGY; THERMOCOCCUS; TWO DIMENSIONAL GEL ELECTROPHORESIS; ULTRASTRUCTURE;

AMINO ACID SEQUENCE; AMINOPEPTIDASES; ARCHAEAL PROTEINS; CHROMATOGRAPHY, GEL; CLONING, MOLECULAR; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ESCHERICHIA COLI; GENE EXPRESSION; HOT TEMPERATURE; ISOENZYMES; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; OLIGOPEPTIDES; PLASMIDS; POLYMERIZATION; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUBSTRATE SPECIFICITY; THERMOCOCCUS; TRANSFORMATION, BACTERIAL;

ARCHAEA; ESCHERICHIA COLI; THERMOCOCCUS KODAKARENSIS;

EID: 79959561821     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.110114     Document Type: Article

References (24)

1. De Mot R, Nagy I, Walz J, and Baumeister W, Trends Microbiol., 7, 88-92 (1999).
2. Kisselev AF, Akopian TN, Woo KM, and Goldberg AL, J. Biol. Chem., 274, 3363-3371 (1999).
3. Park SC, Jia B, Yang JK, Van DL, Shao YG, Han SW, Jeon YJ, Chung CH, and Cheong GW, Mol. Cells, 21, 129-134 (2006).
4. Kang M, Kim S, Kwack P, Lim B, Ahn S, Rho Y, Seong I, Park S, Eom S, Cheong G, and Chung CH, EMBO J., 22, 2893-2902 (2003).
5. Benaroudj N and Goldberg AL, Nat. Cell. Biol., 2, 833-839 (2000).
6. Weber-Ban EU, Reid BG, Miranker AD, and Horwich AL, Nature, 401, 90-93 (1999).
7. Franzetti B, Schoehn G, Hernandez J, Jaquinod M, Ruigrok R, and Zaccai G, EMBO J., 21, 2132-2138 (2002).
8. Tamura N, Lottspeich F, Baumeister W, and Tamura T, Cell, 95, 637-648 (1998).
9. Lee HS, Cho Y, Kim YJ, Nam K, Lee JH, and Kang SG, J. Biosci. Bioeng., 104, 188-194 (2007).
10. Rockel B, Peters J, Müller SA, Seyit G, Ringler P, Hegerl R, Glaeser RM, and Baumeister W, Proc. Natl. Acad. Sci. USA, 102, 10135-10140 (2005).
11. Remaut H, Bompard-Gilles C, Goffin C, Frere JM, and van Beeumen J, Nat. Struct. Biol., 8, 674-678 (2001).
12. Schoehn G, Vellieux FM, Asunción Durá M, Receveur-Bréchot V, Fabry CM, Ruigrok RW, Ebel C, Roussel A, and Franzetti B, J. Biol. Chem., 281, 36327-36337 (2006).
13. Porciero S, Receveur-Bréchot V, Mori K, Franzetti B, and Roussel A, Acta Crystallogr. F Struct. Biol. Cryst. Commun., 61, 239-242 (2005).
14. Lee HS, Kim YJ, Bae SS, Jeon JH, Lim JK, Jeong BC, Kang SG, and Lee JH, Appl. Environ. Microbiol., 72, 1886-1890 (2006).
15. Park SC, Pham BP, van Duyet L, Jia B, Lee S, Yu R, Woo HS, Yang JK, Hahm KS, and Cheong GW, Biochim. Biophys. Acta, 1784, 783-788 (2008).
16. Doi E, Shibata D, and Matoba T, Anal. Biochem., 118, 173-184 (1981).
17. Geier E, Pfeifer G, Wilm M, Lucchiari-Hartz M, Baumeister W, Eichmann K, and Niedermann G, Science, 283, 978-981 (1999).
18. Shockley KR, Ward DE, Chhabra SR, Conners SB, Montero CI, and Kelly RM, Appl. Environ. Microbiol., 69, 2365-2371 (2003).
19. Dura MA, Receveur-Brechot V, Andrieu JP, Ebel C, Schoehn G, Roussel A, and Franzetti B, Biochemistry, 44, 3477-3486 (2005).
20. Ando S, Ishikawa K, Ishida H, Kawarabayasi Y, Kikuchi H, and Kosugi Y, FEBS Lett., 447, 25-28 (1999).
21. Rawlings ND, Barrett AJ, and Bateman A, Nucleic Acids Res., 38, 227-233 (2010).
22. Russo S and Baumann U, J. Biol. Chem., 279, 51275-51281 (2004).
23. Mori K and Ishikawa K, Biosci. Biotechnol. Biochem., 69, 1854-1860 (2005).
24. Borissenko L and Groll M, J. Mol. Biol., 346, 1207-1219 (2005).