Structural and functional characterization of osmotically inducible protein C (OsmC) from Thermococcus kodakaraensis KOD1

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1784, Issue 5, 2008, Pages 783-788

  Park, Seong Cheol ^a,b   Pham, Bang Phuong ^a   Van Duyet, Le ^a   Jia, Baolei ^a   Lee, Sangmin ^a   Yu, Rui ^a   Woo Han, Sang ^a   Yang, Jae Kyung ^a   Hahm, Kyung Soo ^b   Cheong, Gang Won ^a  

^a Gyeongsang National University   (South Korea)

^b Chosun University   (South Korea)

Author keywords

Archaeon; Electron microscopy; OsmC; Thermococcus kodakaraensis KOD1

Indexed keywords

OSMOTICALLY INDUCIBLE PROTEIN C; PEROXIDASE; PROTEIN C; UNCLASSIFIED DRUG;

ARTICLE; ELECTRON MICROSCOPY; ESCHERICHIA COLI; GEL FILTRATION CHROMATOGRAPHY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN STRUCTURE; TEMPERATURE; THERMOCOCCUS; THERMOCOCCUS KODAKARAENSIS;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; CHROMATOGRAPHY, GEL; CROSS-LINKING REAGENTS; HEAT; HYDROGEN PEROXIDE; MOLECULAR SEQUENCE DATA; OSMOTIC PRESSURE; OXIDATIVE STRESS; PEROXIDASE; PROTEIN STRUCTURE, QUATERNARY; SEQUENCE HOMOLOGY, AMINO ACID; TERT-BUTYLHYDROPEROXIDE; THERMOCOCCUS;

ARCHAEA; ESCHERICHIA COLI; THERMOCOCCUS KODAKARENSIS;

EID: 41949131821     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2008.02.002     Document Type: Article

References (30)

1. Macario A.J., Lange M., Ahring B.K., and De Macario E.C. Stress genes and proteins in the archaea. Microbiol. Mol. Biol. Rev. 63 (1999) 923-967
2. de Miguel Bouzas T., Barros-Velazquez J., and Villa T.G. Industrial applications of hyperthermophilic enzymes: a review. Protein Pept. Lett. 13 (2006) 645-651
3. Cowan D.A. Enzymes from thermophilic archaebacteria: current and future applications in biotechnology. Biochem. Soc. Symp. 58 (1992) 149-169
4. Schiraldi C., Giuliano M., and De Rosa M. Perspectives on biotechnological applications of archaea. Archaea 1 (2002) 75-86
5. Gutierrez C., and Devedjian J.C. Osmotic induction of gene osmC expression in Escherichia coli K12. J. Mol. Biol. 20 (1991) 959-973
6. B-dependent general stress regulon. J. Bacteriol. 180 (1998) 4212-4218
7. Davalos-Garcia M., Conter A., Toesca I., Gutierrez C., and Cam K. Regulation of osmC gene expression by the two-component system rcsB-rcsC in Escherichia coli. J. Bacteriol. 183 (2001) 5870-5876
8. Choi I.G., Shin D.H., Brandsen J., Jancarik J., Busso D., Yokota H., Kim R., and Kim S.H. Structure-based functional inference in structural genomics. J. Struct. Funct. Genomics 4 (2003) 129-135
9. Lesniak J., Barton W.A., and Nikolov D.B. Structural and functional features of the Escherichia coli hydroperoxide resistance protein OsmC. Protein Sci. 12 (2003) 2838-2843
10. Morikawa M., Izawa Y., Rashid N., Hoaki T., and Imanaka T. Purification and characterization a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp. Appl. Environ. Microbiol. 60 (1994) 4559-4566
11. Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., and Imanaka T. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res. 15 (2005) 352-363
12. Galvani M., Rovatti L., Hamdan M., Herbert B., and Righetti P.G. Protein alkylation in the presence/absence of thiourea in proteome analysis: a matrix assisted laser desorption/ionization-time of flight-mass spectrometry investigation. Electrophoresis 22 (2001) 2066-2074
13. Shevchenko A., Wilm M., Vorm O., and Mann M. Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal. Chem. 68 (1996) 850-858
14. Sambrook J., and Russell D.W. Molecular Cloning: a Laboratory Manual. 3rd ed. (2001), Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
15. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
16. Vinothkumar K.R., Raunser S., Jung H., and Kühlbrandt W. Oligomeric structure of the carnitine transporter CaiT from Escherichia coli. J. Biol. Chem. 281 (2006) 4795-4801
17. Wolff S. Ferrous ion oxidation in presence of ferric ion indicator xylenol orange for measurement of hydroperoxidase. Methods Enzymol. 233 (1994) 182-189
18. Lesniak J., Barton W.A., and Nikolov D.B. Structural and functional characterization of the Pseudomonas hydroperoxide resistance protein Ohr. EMBO J. 21 (2002) 6649-6659
19. Park S.C., Jia B., Yang J.K., Van D.L., Shao Y.G., Han S.W., Jeon Y.J., Chung C.H., and Cheong G.W. Oligomeric structure of the ATP-dependent protease La (Lon) of Escherichia coli. Mol. Cells 21 (2006) 129-134
20. Saxton W.O., Pitt T.J., and Horner M. Digital image processing: the Semper system. Ultramicroscopy 4 (1979) 343-354
21. Hegerl R. The EM program package: a platform for image processing in biological electron microscopy. J. Struct. Biol. 116 (1996) 30-34
22. Baumeister W., Dahlmann B., Hegerl R., Kopp F., Luehn L., and Pfeifer G. Electron microscopy and image analysis of the multicatalytic proteinase. FEBS Lett. 241 (1988) 239-245
23. Kim K.I., Cheong G.W., Park S.C., Ha J.S., Woo K.M., Choi S.J., and Chung C.H. Heptameric ring structure of the heat-shock protein ClpB, a protein-activated ATPase in Escherichia coli. J. Mol. Biol. 303 (2000) 655-666
24. van Heel M., and Frank J. Use of multivariate statistics in analysing the images of biological macromolecules. Ultramicroscopy 6 (1981) 187-194
25. Marco S., Ureña D., Carrascosa J.L., Waldmann T., Peters J., Hegerl R., Pfeifer G., Sack-kongehl H., and Baumeister W. The molecular chaperone TF55. Assessment of symmetry. FEBS lett. 341 (1994) 152-155
26. Mojica F.J.M., Cisneros E., Ferrer C., RodrI{hook above}guez-valera F., and Juez G. Osmotically induced response in representative of halophilic prokaryotes: the bacterium Halomonas elongata and the archaeon Haloferax volcanii. J. Bacteriol. 179 (1997) 5471-5481
27. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
28. Rehse P.H., Ohshima N., Nodake Y., and Tahirov T.H. Crystallographic structure and biochemical analysis of the Thermus thermophilus osmotically inducible protein C. J. Mol. Biol. 338 (2004) 959-968
29. Chrambach A. Electrophoresis and electrofocusing on polyacrylamide gel in the study of native macromolecules electrophoresis and electrofocusing on polyacrylamide gel in the study of native macromolecules. Mol. Cell. Biochem. 29 (1980) 23-46
30. Prapapanich V., Chen S., Toran E.J., Rimerman R.A., and Smith D.F. Mutational analysis of the hsp70-interacting protein Hip. Mol. Cell. Biol. 16 (1996) 6200-6207