Crystal structure of a dodecameric tetrahedral-shaped aminopeptidase

Journal of Biological Chemistry

Volumn 279, Issue 49, 2004, Pages 51275-51281

  Russo, Santina ^a   Baumann, Ulrich ^a  

^a UNIVERSITY OF BERN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CELLS; CRYSTAL STRUCTURE; CYTOLOGY; DEGRADATION; MONOMERS;

AMINOPEPTIDASE; PEPTIDES; TETRAHEDRON;

ENZYMES;

AMINOPEPTIDASE; GENOMIC DNA; PROTEIN SUBUNIT; PROTEINASE; ZINC;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CONTROLLED STUDY; CRYSTAL STRUCTURE; CYTOSOL; ENZYME ACTIVITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DEGRADATION; PROTEIN FOLDING; PROTEIN METABOLISM; PROTEIN QUATERNARY STRUCTURE; PYROCOCCUS; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; AMINO ACIDS; AMINOPEPTIDASES; ARCHAEAL PROTEINS; BINDING SITES; CYTOSOL; HALOARCULA MARISMORTUI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; PYROCOCCUS HORIKOSHII; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY; ZINC;

AEROMONAS; HALOARCULA MARISMORTUI; PYROCOCCUS; PYROCOCCUS HORIKOSHII; THERMOPLASMA ACIDOPHILUM; VIBRIO PROTEOLYTICUS;

EID: 10944251348     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M409455200     Document Type: Article

References (38)

1. Wenzel, T., Eckerskorn, C., Lottspeich, F., and Baumeister, W. (1994) FEBS Lett. 349, 205-209
2. Lowe, J., Stock, D., Jap, B., Zwickl, P., Baumeister, W., and Huber, R. (1995) Science 268, 533-539
3. Groll, M., Ditzel, L., Lowe, J., Stock, D., Bochtler, M., Bartunik, H. D., and Huber, R. (1997) Nature 386, 463-471
4. Brandstetter, H., Kim, J. S., Groll, M., and Huber, R. (2001) Nature 414, 466-470
5. Walz, J., Tamura, T., Tamura, N., Grimm, R., Baumeister, W., and Koster, A. J. (1997) Mol. Cell 1, 59-65
6. Tamura, T., Tamura, N., Cejka, Z., Hegerl, R., Lottspeich, F., and Baumeister, W. (1996) Science 274, 1385-1389
7. Geier, E., Pfeifer, G., Wilm, M., Lucchiari-Hartz, M., Baumeister, W., Eichmann, K., and Niedermann, G. (1999) Science 283, 978-981
8. Remaut, H., Bompard-Gilles, C., Goffin, C., Frere, J. M., and Van Beeumen, J. (2001) Nat. Struct. Biol. 8, 674-678
9. Joshua-Tor, L., Xu, H. E., Johnston, S. A., and Rees, D. C. (1995) Science 269, 945-950
10. Franzetti, B., Schoehn, G., Hernandez, J. F., Jaquinod, M., Ruigrok, R. W., and Zaccai, G. (2002) EMBO J. 21, 2132-2138
11. Rawlings, N. D., and Barrett, A. J. (1999) Nucleic Acids Res. 27, 325-331
12. Maher, M. J., Ghosh, M., Grunden, A. M., Menon, A. L., Adams, M. W., Freeman, H. C., and Guss, J. M. (2004) Biochemistry 43, 2771-2783
13. Burley, S. K., David, P. R., Taylor, A., and Lipscomb, W. N. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 6878-6882
14. Roderick, S. L., and Matthews, B. W. (1993) Biochemistry 32, 3907-3912
15. Chevrier, B., Schalk, C., D'Orchymont, H., Rondeau, J. M., Moras, D., and Tarnus, C. (1994) Structure 2, 283-291
16. Lowther, W. T., and Matthews, B. W. (2002) Chem. Rev. 102, 4581-4608
17. Mullis, K., Faloona, F., Scharf, S., Saiki, R., Horn, G., and Erlich, H. (1986) Cold Spring Harbor Symp. Quant. Biol. 51, Pt. 1, 263-273
18. Laemmli, U. K. (1970) Nature 227, 680-685
19. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 916-924
20. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 67-71
21. Kabsch, W. (1993) J. Appl. Crystallogr. 26, 795-800
22. Vagin, A., and Teplayakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
23. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D 54, Pt. 5, 905-921
24. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
25. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard. (1991) Acta Crystallogr. Sect. A 47, Pt. 2, 110-119
26. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Cryst. Sect. D 53, 240-255
27. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
28. Kleywegt, G. J., and Jones, T. A. (1996) Structure 4, 1395-1400
29. Chevrier, B., D'Orchymont, H., Schalk, C., Tarnus, C., and Moras, D. (1996) Eur. J. Biochem. 237, 393-398
30. Sander, C., and Schneider, R. (1991) Proteins 9, 56-68
31. Stamper, C., Bennett, B., Edwards, T., Holz, R. C., Ringe, D., and Petsko, G. (2001) Biochemistry 40, 7035-7046
32. Bennett, B., and Holz, R. C. (1997) Biochemistry 36, 9837-9846
33. De Paola, C. C., Bennett, B., Holz, R. C., Ringe, D., and Petsko, G. A. (1999) Biochemistry 38, 9048-9053
34. Bennett, B., and Holz, R. C. (1997) J. Am. Chem. Soc. 119, 1923-1933
35. Prescott, J. M., Wagner, F. W., Holmquist, B., and Vallee, B. L. (1983) Biochem. Biophys. Res. Commun. 114, 646-652
36. Gonzales, T., and Robert-Baudouy, J. (1996) FEMS Microbiol. Rev. 18, 319-344
37. Taylor, A. (1993) Trends Biochem. Sci. 18, 167-171
38. Taylor, A. (1993) FASEB J. 7, 290-298