-
1
-
-
0041817645
-
Translational selection and yeast proteome evolution
-
Akashi,H. (2003) Translational selection and yeast proteome evolution. Genetics, 164, 1291-1303.
-
(2003)
Genetics
, vol.164
, pp. 1291-1303
-
-
Akashi, H.1
-
2
-
-
33750704608
-
Five repair pathways in one context: chromatin modification during DNA repair
-
Ataian,Y. Krebs,J.E. (2006) Five repair pathways in one context: chromatin modification during DNA repair. Biochem. Cell Biol., 84, 490-504.
-
(2006)
Biochem. Cell Biol.
, vol.84
, pp. 490-504
-
-
Ataian, Y.1
Krebs, J.E.2
-
3
-
-
63449105244
-
Intrinsic variability of gene expression encoded in nucleosome positioning sequences
-
Choi,J.K. Kim,Y.J. (2009) Intrinsic variability of gene expression encoded in nucleosome positioning sequences. Nat. Genet., 41, 498-503.
-
(2009)
Nat. Genet.
, vol.41
, pp. 498-503
-
-
Choi, J.K.1
Kim, Y.J.2
-
4
-
-
33645785104
-
Ahigh-resolution map of transcription in the yeast genome
-
David,L. et al. (2006)Ahigh-resolution map of transcription in the yeast genome. Proc. Natl Acad. Sci. USA, 103, 5320-5325.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 5320-5325
-
-
David, L.1
-
5
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
Field,Y. et al. (2008) Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput. Biol., 4, e1000216.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Field, Y.1
-
6
-
-
63449135035
-
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization
-
Field,Y. et al. (2009) Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat. Genet., 41, 438-445.
-
(2009)
Nat. Genet.
, vol.41
, pp. 438-445
-
-
Field, Y.1
-
7
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison,C.T. et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature, 431, 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
-
8
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan,N. et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature, 458, 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
-
9
-
-
66249129718
-
Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements
-
Kristiansson,E. et al. (2009) Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements. Mol. Biol. Evol., 26, 1299-1307.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1299-1307
-
-
Kristiansson, E.1
-
10
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
Lee,W. et al. (2007) A high-resolution atlas of nucleosome occupancy in yeast. Nat. Genet., 39, 1235-1244.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1235-1244
-
-
Lee, W.1
-
11
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti,G. et al. (2009) Population genomics of domestic and wild yeasts. Nature, 458, 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
-
12
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
-
Mavrich,T.N. et al. (2008) A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res., 18, 1073-1083.
-
(2008)
Genome Res.
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.N.1
-
13
-
-
34547709593
-
Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals
-
Parmley,J.L. Hurst,L.D. (2007) Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals. Mol. Biol. Evol., 24, 1600-1603.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1600-1603
-
-
Parmley, J.L.1
Hurst, L.D.2
-
14
-
-
34547643563
-
Nucleosome positioning signals in genomic DNA
-
Peckham,H.E. et al. (2007) Nucleosome positioning signals in genomic DNA. Genome Res., 17, 1170-1177.
-
(2007)
Genome Res.
, vol.17
, pp. 1170-1177
-
-
Peckham, H.E.1
-
15
-
-
68349125112
-
What controls nucleosome positions?
-
Segal,E. Widom,J. (2009) What controls nucleosome positions? Trends Genet., 25, 335-343.
-
(2009)
Trends Genet.
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
16
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal,E. et al. (2006) A genomic code for nucleosome positioning. Nature, 442, 772-778.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
-
17
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
-
Shivaswamy,S. et al. (2008) Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol., 6, e65.
-
(2008)
PLoS Biol.
, vol.6
-
-
Shivaswamy, S.1
-
18
-
-
33846786904
-
Synonymous codon usage in Escherichia coli: selection for translational accuracy
-
Stoletzki,N. Eyre-Walker,A. (2007) Synonymous codon usage in Escherichia coli: selection for translational accuracy. Mol. Biol. Evol., 24, 374-381.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 374-381
-
-
Stoletzki, N.1
Eyre-Walker, A.2
-
19
-
-
21844442362
-
Repair of UV lesions in nucleosomes-intrinsic properties and remodeling
-
Thoma,F. (2005) Repair of UV lesions in nucleosomes-intrinsic properties and remodeling. DNA Repair, 4, 855-869.
-
(2005)
DNA Repair
, vol.4
, pp. 855-869
-
-
Thoma, F.1
-
20
-
-
77952245290
-
Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences
-
Tirosh,I. et al. (2010) Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Mol. Syst. Biol., 6, 365.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 365
-
-
Tirosh, I.1
-
21
-
-
77955045449
-
The role of nucleosome positioning in the evolution of gene regulation
-
Tsankov,A.M. et al. (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol., 8, e1000414.
-
(2010)
PLoS Biol.
, vol.8
-
-
Tsankov, A.M.1
-
22
-
-
57149100569
-
The impact of the nucleosome code on protein-coding sequence evolution in yeast
-
Warnecke,T. et al. (2008) The impact of the nucleosome code on protein-coding sequence evolution in yeast. PLoS Genet., 4, e1000250.
-
(2008)
PLoS Genet.
, vol.4
-
-
Warnecke, T.1
-
23
-
-
56649089682
-
Evolutionary footprints of nucleosome positions in yeast
-
Washietl,S. et al. (2008) Evolutionary footprints of nucleosome positions in yeast. Trends Genet., 24, 583-587.
-
(2008)
Trends Genet.
, vol.24
, pp. 583-587
-
-
Washietl, S.1
-
24
-
-
37249077649
-
Chromatin remodelling at promoters suppresses antisense transcription
-
Whitehouse,I. et al. (2007) Chromatin remodelling at promoters suppresses antisense transcription. Nature, 450, 1031-1035.
-
(2007)
Nature
, vol.450
, pp. 1031-1035
-
-
Whitehouse, I.1
-
25
-
-
0035704707
-
Role of DNAsequence in nucleosome stability and dynamics
-
Widom,J.(2001) Role of DNAsequence in nucleosome stability and dynamics. Q. Rev. Biophys., 34, 269-324.
-
(2001)
Q. Rev. Biophys.
, vol.34
, pp. 269-324
-
-
Widom, J.1
-
26
-
-
38949204996
-
Genomic sequence is highly predictive of local nucleosome depletion
-
Yuan,G.C. Liu,J.S. (2008) Genomic sequence is highly predictive of local nucleosome depletion. PLoS Comput. Biol., 4, e13.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Yuan, G.C.1
Liu, J.S.2
-
27
-
-
44449115151
-
RNA landscape of evolution for optimal exon and intron discrimination
-
Zhang,C. et al. (2008) RNA landscape of evolution for optimal exon and intron discrimination. Proc. Natl Acad. Sci. USA, 105, 5797-5802.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 5797-5802
-
-
Zhang, C.1
|