Molecular typing of Coorg black pepper yellows phytoplasma by multiple gene analyses

Annals of Applied Biology

Volumn 159, Issue 1, 2011, Pages 58-68

  Adkar Purushothama, C R ^a,b   Quaglino, F ^a   Casati, P ^a   Bianco, P A ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b SRI JAYACHAMARAJENDRA COLLEGE OF ENGINEERING   (India)

Author keywords

Candidatus Phytoplasma asteris; genetic lineage; multigene analysis; restriction fragment length polymorphism; single nucleotide polymorphism

Indexed keywords

ENZYME ACTIVITY; EPIDEMIOLOGY; FRUIT; GENETIC ANALYSIS; GENETIC MARKER; MOLECULAR ANALYSIS; PHYTOPLASMA; POLYMERASE CHAIN REACTION; POLYMORPHISM; SYMPTOM;

INDIA;

CANDIDATUS PHYTOPLASMA; CANDIDATUS PHYTOPLASMA ASTERIS; PIPER NIGRUM;

EID: 79959375428     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2011.00476.x     Document Type: Article

References (33)

1. Adkar-Purushothama C.R., Gottravalli-Ramanayaka J., Sano T., Casati P., Bianco P.A., (2007) Are phytoplasmas the etiological agent of yellow leaf disease of Areca catechu in India? Bulletin of Insectology, 60, 161-162.
2. Adkar-Purushothama C.R., Casati P., Quaglino F., Durante G., Bianco P.A., (2009) First report of a 'Candidatus Phytoplasma asteris'-related strain associated with a yellows disease of black pepper (Piper nigrum) in India. Plant Pathology, 58, 789.
3. Archambaud C., Gouin E., Pizarro-Cerda J., Cossart P., Dussurget O., (2005) Translation elongation factor EF-Tu is a target for Stp, a serine-threonine phosphatase involved in virulence of Listeria monocytogenes. Molecular Microbiology, 56, 383-396. (Pubitemid 40516779)
4. Bhat A.J., Madhubala R., Hareesh P.S., Anandaraj M., (2006) Detection and characterization of the phytoplasma associated with a phyllody disease of black pepper (Piper nigrum L.) in India. Scientia Horticulturae, 107, 200-204. (Pubitemid 41790000)
5. Chen J., Sahota A., Stambrook P.J., Tischfield J.A., (1991) Polymerase chain-reaction amplification and sequence-analysis of human mutant adenine phosphoribosyltransferase genes-the nature and frequency of errors caused by Taq DNA-polymerase. Mutation Research, 249, 169-176.
6. Deng S., Hiruki C., (1991) Amplification of 16S rRNA genes from culturable and non-culturable mollicutes. Journal of Microbiological Methods, 14, 53-61.
7. Doi Y., Teranaka M., Yora K., Asuyama H., (1967) Mycoplasma or PLT group-like microorganisms found in the phloem elements of plants infected with mulberry dwarf, potato witches' broom, aster yellows, or Paulownia witches' broom. Annals of the Phytopathological Society of Japan, 33, 259-266.
8. Duduk B., Calari A., Paltrinieri S., Duduk N., Bertaccini A., (2009) Multigene analysis for differentiation of aster yellows phytoplasmas infecting carrots in Serbia. Annals of Applied Biology, 154, 219-229.
9. Gundersen D.E., Lee I.-M., (1996) Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs. Phytopathologia Mediterranea, 35, 144-151.
10. Gundersen D.E., Lee I.-M., Rehner S.A., Davis R.E., Kingsbury D.T., (1994) Phylogeny of mycoplasma-like organisms (phytoplasmas): a basis for their classification. Journal of Bacteriology, 176, 5244-5254. (Pubitemid 24273509)
11. Gundersen D.E., Lee I.-M., Schaff D.A., Harrison N.A., Chang C.J., Davis R.E., Kinsbury D.T., (1996) Genomic diversity and differentiation among phytoplasma strains in 16S rRNA group I (aster yellows and related phytoplasmas) and III (X-disease and related phytoplasmas). International Journal of Systematic Bacteriology, 46, 64-75. (Pubitemid 26030472)
12. Hall T.A., (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
13. Hodgetts J., Boonham N., Mumford R., Harrison N., Dickinson M., (2008) Phytoplasma phylogenetics based on analysis of sec A and 23S rRNA gene sequences for improved resolution of candidate species of 'Candidatus Phytoplasma'. International Journal of Systematic and Evolutionary Microbiology, 58, 1826-1837.
14. Kakizawa S., Oshima K., Nishigawa H., Jung H.-Y., Wei W., Suzuki S., Tanaka M., Miyata S., Ugaki M., Namba S., (2004) Secretion of immunodominant membrane protein from onion yellows phytoplasma through the Sec protein-translocation system in Escherichia coli. Microbiology, 150, 135-142. (Pubitemid 38111479)
15. Lafontaine D.L.J., Tollervey D., (2001) Ribosomal RNA. Encyclopedia of life sciences. London, UK: MacMillan-Nature Ref. Ltd. [WWW document]. URL
16. Lee I.-M., Gundersen-Rindal D.E., Davis R.E., Bartoszyk I.M., (1998) Revised classification scheme of phytoplasma based on RFLP analysis of 16S rRNA and ribosomal protein gene sequences. International Journal of Systematic Bacteriology, 48, 1153-1169. (Pubitemid 28523328)
17. Lee I.-M., Davis R.E., Gundersen-Rindal D.E., (2000) Phytoplasma: phytopathogenic mollicutes. Annual Review of Microbiology, 54, 221-255.
18. Lee I.-M., Gundersen D.E., Davis R.E., Bottner K.D., Marcone C., Seemüller E., (2004) 'Candidatus Phytoplasma asteris', a novel phytoplasma taxon associated with aster yellows and related diseases. International Journal of Systematic and Evolutionary Microbiology, 54, 1037-1048. (Pubitemid 39139816)
19. Lee I.-M., Zhao Y., Bottner K.D., (2006) SecY gene sequence analysis for finer differentiation of diverse strains in the aster yellows phytoplasma group. Molecular and Cellular Probes, 20, 87-91. (Pubitemid 43343720)
20. Marcone C., Lee I.-M., Davis R.E., Ragozzino A., Seemüller E., (2000) Classification of aster yellows-group phytoplasmas based on combined analyses of rRNA and tuf gene sequences. International Journal of Systematic and Evolutionary Microbiology, 50, 1703-1713.
21. Martini M., Botti S., Marcone C., Marzachà C., Casati P., Bianco P.A., Benedetti R., Bertaccini A., (2002) Genetic variability among Flavescence dorée phytoplasmas from different origins in Italy and France. Molecular and Cellular Probes, 16, 197-208.
22. Martini M., Lee I.-M., Bottner K.D., Zhao Y., Botti S., Bertaccini A., Harrison N.A., Carraro L., Marcone C., Khan A.J., Osler R., (2007) Ribosomal protein gene-based phylogeny for finer differentiation and classification of phytoplasmas. International Journal of Systematic and Evolutionary Microbiology, 57, 2037-2051. (Pubitemid 47497142)
23. McCoy R.E., Caudwell A., Chang C.J., Chen T.A., Chiykowski L.N., Cousin M.T., Dale de Leeuw G.T.N., Golino D.A., Hackett K.J., Kirkpatrick B.C., Manvitz R., Petzold H., Sinha R.H., Sugiura M., Whitcomb R.F., (1989) Plant diseases associated with mycoplasma-like organisms. In The Mycoplasmas. Volume 5, pp. 545-560. Eds, I.L. Yang, B.M. Zhu, E. Seemüller, R.F. Whitcomb, and, J.G. Tully,. New York, USA: Academic Press.
24. Quaglino F., Zhao Y., Bianco P.A., Wei W., Casati P., Durante G., Davis R.E., (2009) New 16Sr subgroups and distinct single nucleotide polymorphism lineages among grapevine Bois noir phytoplasma populations. Annals of Applied Biology, 154, 279-289.
25. Schneider B., Gibb K.S., Seemüller E., (1997) Sequence and RFLP analysis of the elongation factor Tu gene used in differentiation and classification of phytoplasmas. Microbiology, 143, 3381-3389. (Pubitemid 27470188)
26. Seemüller E., Marcone C., Lauer U., Ragozzino A., Göschl M., (1998) Current status of molecular classification of the phytoplasmas. Journal of Plant Pathology, 80, 3-26. (Pubitemid 128682331)
27. Sinclair W.A., Griffiths H.M., Lee I.-M., (1994) Mycoplasmalike organisms as causes of slow growth and decline of trees and shrubs. Journal of Arboriculture, 20, 176-189.
28. Smart C.D., Schneider B., Blomquist C.L., Guerra L.J., Harrison N.A., Ahrens U., Lorenz K.H., Seemüller E., Kirkpatrick B., (1996) Phytoplasma-specific PCR primers based on sequence of the 16S-23S rRNA spacer region. Applied and Environmental Microbiology, 62, 2988-2993. (Pubitemid 26260111)
29. Streten C., Gibb K.S., (2005) Genetic variation in Candidatus Phytoplasma australiense. Plant Pathology, 54, 8-14. (Pubitemid 40252973)
30. Tamura K., Dudley J., Nei M., Kumar S., (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599. (Pubitemid 47236692)
31. Tsai J.H., (1979) Vector transmission of mycoplasmal agents of plant diseases. In The Mycoplasmas-Plant and Insect Mycoplasmas. Volume 3, pp. 265-307. Eds, R.F. Whitcomb, and, J.G. Tully,. New York, USA: Academic Press.
32. Wei W., Davis R.E., Lee I.M., Zhao Y., (2007) Computer-simulated RFLP analysis of 16S rRNA genes: identification of ten new phytoplasma groups. International Journal of Systematic and Evolutionary Microbiology, 57, 1855-1867. (Pubitemid 47308427)
33. Zhao Y., Wei W., Lee I.-M., Shao J., Suo X., Davis R.E., (2009) Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII). International Journal of Systematic and Evolutionary Microbiology, 59, 2582-2593.