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Volumn 39, Issue 14, 2011, Pages 5945-5954

High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL CELL; BIOTECHNOLOGICAL PROCEDURES; COST EFFECTIVENESS ANALYSIS; CYTOTOXICITY; DNA DAMAGE; DNA REPLICATION; DNA SEQUENCE; ESCHERICHIA COLI; HIGH THROUGHPUT SEQUENCING; MUTAGENESIS; NEXT GENERATION SEQUENCING; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS;

EID: 79959352056     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr159     Document Type: Article
Times cited : (56)

References (37)
  • 1
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • DOI 10.1038/362709a0
    • Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature, 362, 709-715. (Pubitemid 23125973)
    • (1993) Nature , vol.362 , Issue.6422 , pp. 709-715
    • Lindahl, T.1
  • 2
    • 0034626735 scopus 로고    scopus 로고
    • Oxidants, oxidative stress and the biology of ageing
    • Finkel, T. and Holbrook, N.J. (2000) Oxidants, oxidative stress and the biology of ageing. Nature, 408, 239-247.
    • (2000) Nature , vol.408 , pp. 239-247
    • Finkel, T.1    Holbrook, N.J.2
  • 3
    • 41649091432 scopus 로고    scopus 로고
    • Bulky DNA lesions induced by reactive oxygen species
    • Wang, Y. (2008) Bulky DNA lesions induced by reactive oxygen species. Chem. Res. Toxicol., 21, 276-281.
    • (2008) Chem. Res. Toxicol. , vol.21 , pp. 276-281
    • Wang, Y.1
  • 4
    • 0030783061 scopus 로고    scopus 로고
    • N-nitroso compounds and man: Sources of exposure, endogenous formation and occurrence in body fluids
    • Tricker, A.R. (1997) N-nitroso compounds and man: sources of exposure, endogenous formation and occurrence in body fluids. Eur. J. Cancer Prev., 6, 226-268. (Pubitemid 27405006)
    • (1997) European Journal of Cancer Prevention , vol.6 , Issue.3 , pp. 226-268
    • Tricker, A.R.1
  • 6
    • 0031043857 scopus 로고    scopus 로고
    • 6- methylguanine in DNA
    • Shuker, D.E. and Margison, G.P. (1997) Nitrosated glycine derivatives as a potential source of O6-methylguanine in DNA. Cancer Res., 57, 366-369. (Pubitemid 27081646)
    • (1997) Cancer Research , vol.57 , Issue.3 , pp. 366-369
    • Shuker, D.E.G.1    Margison, G.P.2
  • 7
    • 0032936961 scopus 로고    scopus 로고
    • 6- methyl-2'-deoxyguanosine in DNA exposed to nitrosated glycine derivatives using a combined immunoaffinity/HPLC method
    • DOI 10.1021/tx980057n
    • Harrison, K.L., Jukes, R., Cooper, D.P. and Shuker, D.E. (1999) Detection of concomitant formation of O6-carboxymethyl-and O6-methyl-20-deoxyguanosine in DNA exposed to nitrosated glycine derivatives using a combined immunoaffinity/HPLC method. Chem. Res. Toxicol., 12, 106-111. (Pubitemid 29048839)
    • (1999) Chemical Research in Toxicology , vol.12 , Issue.1 , pp. 106-111
    • Harrison, K.L.1    Jukes, R.2    Cooper, D.P.3    Shuker, D.E.G.4
  • 8
    • 0034011261 scopus 로고    scopus 로고
    • Oxyradicals and DNA damage
    • Marnett, L.J. (2000) Oxyradicals and DNA damage. Carcinogenesis, 21, 361-370. (Pubitemid 30137921)
    • (2000) Carcinogenesis , vol.21 , Issue.3 , pp. 361-370
    • Marnett, L.J.1
  • 9
    • 4644282150 scopus 로고    scopus 로고
    • Mutagenesis, genotoxicity, and repair of 1-methyladenine, 3-alkylcytosines, 1-methylguanine, and 3-methylthymine in alkB Escherichia coli
    • DOI 10.1073/pnas.0403489101
    • Delaney, J.C. and Essigmann, J.M. (2004) Mutagenesis, genotoxicity and repair of 1-methyladenine, 3-alkylcytosines, 1-methylguanine, and 3-methylthymine in alkB Escherichia coli. Proc. Natl Acad. Sci. USA, 101, 14051-14056. (Pubitemid 39305028)
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.39 , pp. 14051-14056
    • Delaney, J.C.1    Essigmann, J.M.2
  • 10
    • 0027399969 scopus 로고
    • Single-stranded shuttle phagemid for mutagenesis studies in mammalian cells: 8-Oxoguanine in DNA induces targeted G·C → T·A transversions in simian kidney cells
    • DOI 10.1073/pnas.90.3.1122
    • Moriya, M. (1993) Single-stranded shuttle phagemid for mutagenesis studies in mammalian cells: 8-oxoguanine in DNA induces targeted G·C!T·A transversions in simian kidney cells. Proc. Natl Acad. Sci. USA, 90, 1122-1126. (Pubitemid 23053963)
    • (1993) Proceedings of the National Academy of Sciences of the United States of America , vol.90 , Issue.3 , pp. 1122-1126
    • Moriya, M.1
  • 11
    • 33745198667 scopus 로고    scopus 로고
    • Assays for determining lesion bypass efficiency and mutagenicity of site-specific DNA lesions in vivo
    • Delaney, J.C. and Essigmann, J.M. (2006) Assays for determining lesion bypass efficiency and mutagenicity of site-specific DNA lesions in vivo. Methods Enzymol., 408, 1-15.
    • (2006) Methods Enzymol. , vol.408 , pp. 1-15
    • Delaney, J.C.1    Essigmann, J.M.2
  • 12
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-the next generation
    • Metzker, M.L. (2009) Sequencing technologies-the next generation. Nat. Rev. Genet., 11, 31-46.
    • (2009) Nat. Rev. Genet. , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 13
    • 50649122770 scopus 로고    scopus 로고
    • EagleView: A genome assembly viewer for next-generation sequencing technologies
    • Huang, W. and Marth, G. (2008) EagleView: a genome assembly viewer for next-generation sequencing technologies. Genome Res., 18, 1538-1543.
    • (2008) Genome Res. , vol.18 , pp. 1538-1543
    • Huang, W.1    Marth, G.2
  • 14
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis, E.R. (2008) The impact of next-generation sequencing technology on genetics. Trends Genet., 24, 133-141.
    • (2008) Trends Genet. , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 16
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genome-wide DNA methylation analysis
    • Laird, P.W. (2010) Principles and challenges of genome-wide DNA methylation analysis. Nat. Rev. Genet., 11, 191-203.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 17
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: Advantages and challenges of a maturing technology
    • Park, P.J. (2009) ChIP-seq: advantages and challenges of a maturing technology. Nat. Rev. Genet., 10, 669-680.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 669-680
    • Park, P.J.1
  • 18
    • 33846695786 scopus 로고    scopus 로고
    • Y-family DNA polymerases in Escherichia coli
    • DOI 10.1016/j.tim.2006.12.004, PII S0966842X06002782
    • Jarosz, D.F., Beuning, P.J., Cohen, S.E. and Walker, G.C. (2007) Y-family DNA polymerases in Escherichia coli. Trends Microbiol., 15, 70-77. (Pubitemid 46199189)
    • (2007) Trends in Microbiology , vol.15 , Issue.2 , pp. 70-77
    • Jarosz, D.F.1    Beuning, P.J.2    Cohen, S.E.3    Walker, G.C.4
  • 19
    • 0032782017 scopus 로고    scopus 로고
    • Synthesis and characterization of oligonucleotides containing 50, 8-cyclopurine 20-deoxyribonucleosides: (50R)-50, 8-cyclo-20-deoxyadenosine, (50S)-50, 8-cyclo-20-deoxyguanosine, and (50R)-50, 8-cyclo-20-deoxyguanosine
    • Romieu, A., Gasparutto, D. and Cadet, J. (1999) Synthesis and characterization of oligonucleotides containing 50, 8-cyclopurine 20-deoxyribonucleosides: (50R)-50, 8-cyclo-20-deoxyadenosine, (50S)-50, 8-cyclo-20-deoxyguanosine, and (50R)-50, 8-cyclo-20-deoxyguanosine. Chem. Res. Toxicol., 12, 412-421.
    • (1999) Chem. Res. Toxicol. , vol.12 , pp. 412-421
    • Romieu, A.1    Gasparutto, D.2    Cadet, J.3
  • 20
    • 78049394279 scopus 로고    scopus 로고
    • Synthesis and characterization of oligodeoxyribonucleotides containing a site-specifically incorporated N6-carboxymethyl-20-deoxyadenosine or N4-carboxymethyl-20-deoxycytidine
    • Wang, J. and Wang, Y. (2010) Synthesis and characterization of oligodeoxyribonucleotides containing a site-specifically incorporated N6-carboxymethyl-20-deoxyadenosine or N4-carboxymethyl-20-deoxycytidine. Nucleic Acids Res., 38, 6774-6784.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 6774-6784
    • Wang, J.1    Wang, Y.2
  • 21
    • 59649103931 scopus 로고    scopus 로고
    • Chemical synthesis of oligodeoxyribonucleotides containing N3-and O4-carboxymethylthymidine and their formation in DNA
    • Wang, J. and Wang, Y. (2009) Chemical synthesis of oligodeoxyribonucleotides containing N3-and O4-carboxymethylthymidine and their formation in DNA. Nucleic Acids Res., 37, 336-345.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 336-345
    • Wang, J.1    Wang, Y.2
  • 23
    • 75149112818 scopus 로고    scopus 로고
    • Efficient formation of the tandem thymine glycol/8-oxo-7, 8-dihydroguanine lesion in isolated DNA and the mutagenic and cytotoxic properties of the tandem lesions in Escherichia coli cells
    • Yuan, B., Jiang, Y. and Wang, Y. (2010) Efficient formation of the tandem thymine glycol/8-oxo-7, 8-dihydroguanine lesion in isolated DNA and the mutagenic and cytotoxic properties of the tandem lesions in Escherichia coli cells. Chem. Res. Toxicol., 23, 11-19.
    • (2010) Chem. Res. Toxicol. , vol.23 , pp. 11-19
    • Yuan, B.1    Jiang, Y.2    Wang, Y.3
  • 24
    • 53049102355 scopus 로고    scopus 로고
    • Mutagenic and cytotoxic properties of 6-thioguanine, S6- methylthioguanine, and guanine-S6-sulfonic acid
    • Yuan, B. and Wang, Y. (2008) Mutagenic and cytotoxic properties of 6-thioguanine, S6-methylthioguanine, and guanine-S6-sulfonic acid. J. Biol. Chem., 283, 23665-23670.
    • (2008) J. Biol. Chem. , vol.283 , pp. 23665-23670
    • Yuan, B.1    Wang, Y.2
  • 26
    • 0023097587 scopus 로고
    • Ionizing-radiation-induced damage in the DNA of cultured human cells. Identification of 8,5-cyclo-2-deoxyguanosine
    • Dizdaroglu, M., Dirksen, M.L., Jiang, H.X. and Robbins, J.H. (1987) Ionizing-radiation-induced damage in the DNA of cultured human cells. Identification of 8, 50-cyclo-2-deoxyguanosine. Biochem. J., 241, 929-932. (Pubitemid 17000747)
    • (1987) Biochemical Journal , vol.241 , Issue.3 , pp. 929-932
    • Dizdaroglu, M.1    Dirksen, M.-L.2    Jiang, H.3    Robbins, J.H.4
  • 27
    • 58149144732 scopus 로고    scopus 로고
    • Accumulation of (50S)-8, 50-cyclo-20-deoxyadenosine in organs of Cockayne syndrome complementation group B gene knockout mice
    • Kirkali, G., de Souza-Pinto, N.C., Jaruga, P., Bohr, V.A. and Dizdaroglu, M. (2009) Accumulation of (50S)-8, 50-cyclo-20-deoxyadenosine in organs of Cockayne syndrome complementation group B gene knockout mice. DNA Repair, 8, 274-278.
    • (2009) DNA Repair , vol.8 , pp. 274-278
    • Kirkali, G.1    De Souza-Pinto, N.C.2    Jaruga, P.3    Bohr, V.A.4    Dizdaroglu, M.5
  • 28
    • 79954589295 scopus 로고    scopus 로고
    • Quantification of oxidative DNA lesions in tissues of long-evans cinnamon rats by capillary high-performance liquid chromatography-tandem mass spectrometry coupled with stable isotope-dilution method
    • Wang, J., Yuan, B., Guerrero, C., Bahde, R., Gupta, S. and Wang, Y. (2011) Quantification of oxidative DNA lesions in tissues of long-evans cinnamon rats by capillary high-performance liquid chromatography-tandem mass spectrometry coupled with stable isotope-dilution method. Anal. Chem., 83, 2201-2209.
    • (2011) Anal. Chem. , vol.83 , pp. 2201-2209
    • Wang, J.1    Yuan, B.2    Guerrero, C.3    Bahde, R.4    Gupta, S.5    Wang, Y.6
  • 29
    • 77954580095 scopus 로고    scopus 로고
    • Radiation-induced formation of purine 50, 8-cyclonucleosides in isolated and cellular DNA: High stereospecificity and modulating effect of oxygen
    • Belmadoui, N., Boussicault, F., Guerra, M., Ravanat, J.L., Chatgilialoglu, C. and Cadet, J. (2010) Radiation-induced formation of purine 50, 8-cyclonucleosides in isolated and cellular DNA: high stereospecificity and modulating effect of oxygen. Org. Biomol. Chem., 8, 3211-3219.
    • (2010) Org. Biomol. Chem. , vol.8 , pp. 3211-3219
    • Belmadoui, N.1    Boussicault, F.2    Guerra, M.3    Ravanat, J.L.4    Chatgilialoglu, C.5    Cadet, J.6
  • 31
    • 34249870372 scopus 로고    scopus 로고
    • 8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins
    • DOI 10.1038/nature05843, PII NATURE05843
    • Maga, G., Villani, G., Crespan, E., Wimmer, U., Ferrari, E., Bertocci, B. and Hubscher, U. (2007) 8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins. Nature, 447, 606-608. (Pubitemid 46868042)
    • (2007) Nature , vol.447 , Issue.7144 , pp. 606-608
    • Maga, G.1    Villani, G.2    Crespan, E.3    Wimmer, U.4    Ferrari, E.5    Bertocci, B.6    Hubscher, U.7
  • 32
    • 33847336066 scopus 로고    scopus 로고
    • 6 -methyl-2′- deoxyguanosine DNA adducts: Relevance for gastrointestinal cancer
    • DOI 10.1093/carcin/bgl150
    • Gottschalg, E., Scott, G.B., Burns, P.A. and Shuker, D.E. (2007) Potassium diazoacetate-induced p53 mutations in vitro in relation to formation of O6-carboxymethyl-and O6-methyl-20-deoxyguanosine DNA adducts: relevance for gastrointestinal cancer. Carcinogenesis, 28, 356-362. (Pubitemid 46321851)
    • (2007) Carcinogenesis , vol.28 , Issue.2 , pp. 356-362
    • Gottschalg, E.1    Scott, G.B.2    Burns, P.A.3    Shuker, D.E.G.4
  • 35
    • 0022518370 scopus 로고
    • Free-radical-induced formation of an 8,5'-cyclo-2'-deoxyguanosine moiety in deoxyribonucleic acid
    • Dizdaroglu, M. (1986) Free-radical-induced formation of an 8, 50-cyclo-20-deoxyguanosine moiety in deoxyribonucleic acid. Biochem. J., 238, 247-254. (Pubitemid 16025002)
    • (1986) Biochemical Journal , vol.238 , Issue.1 , pp. 247-254
    • Dizdaroglu, M.1
  • 36
    • 78649653854 scopus 로고    scopus 로고
    • 6-Thioguanine and S6-methylthioguanine are mutagenic in human cells
    • Yuan, B., O'Connor, T.R. and Wang, Y. (2010) 6-Thioguanine and S6-methylthioguanine are mutagenic in human cells. ACS Chem. Biol., 5, 1021-1027.
    • (2010) ACS Chem. Biol. , vol.5 , pp. 1021-1027
    • Yuan, B.1    O'Connor, T.R.2    Wang, Y.3


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