A molecular switch for initiating cell differentiation in arabidopsis

Current Biology

Volumn 21, Issue 12, 2011, Pages 999-1008

  Sanmartín, Maite ^a   Sauer, Michael ^a   Muñoz, Alfonso ^a   Zouhar, Jan ^a   Ordóñez, Angel ^a   Van De Ven, Wilhelmina T G ^a,b   Caro, Elena ^c   De La Paz Sánchez, María ^c   Raikhel, Natasha V ^b   Gutiérrez, Crisanto ^c   Sánchez Serrano, José J ^a   Rojo, Enrique ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c CENTRO DE BIOLOGÍA MOLECULAR SEVERO OCHOA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN;

ARABIDOPSIS; ARTICLE; CELL DIFFERENTIATION; CYTOLOGY; GENETIC TRANSCRIPTION; GENETICS; MERISTEM; MUTATION; PHYSIOLOGY;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL DIFFERENTIATION; MERISTEM; MUTATION; TRANSCRIPTION, GENETIC;

ARABIDOPSIS; MAMMALIA;

EID: 79959350019     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2011.04.041     Document Type: Article

References (45)

1. B.E. Bernstein, T.S. Mikkelsen, X. Xie, M. Kamal, D.J. Huebert, J. Cuff, B. Fry, A. Meissner, M. Wernig, and K. Plath A bivalent chromatin structure marks key developmental genes in embryonic stem cells Cell 125 2006 315 326
2. L.A. Boyer, T.I. Lee, M.F. Cole, S.E. Johnstone, S.S. Levine, J.P. Zucker, M.G. Guenther, R.M. Kumar, H.L. Murray, and R.G. Jenner Core transcriptional regulatory circuitry in human embryonic stem cells Cell 122 2005 947 956 (Pubitemid 41345211)
3. E. Brookes, and A. Pombo Modifications of RNA polymerase II are pivotal in regulating gene expression states EMBO Rep. 10 2009 1213 1219
4. M.G. Guenther, S.S. Levine, L.A. Boyer, R. Jaenisch, and R.A. Young A chromatin landmark and transcription initiation at most promoters in human cells Cell 130 2007 77 88 (Pubitemid 47031323)
5. J.K. Stock, S. Giadrossi, M. Casanova, E. Brookes, M. Vidal, H. Koseki, N. Brockdorff, A.G. Fisher, and A. Pombo Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells Nat. Cell Biol. 9 2007 1428 1435 (Pubitemid 350201756)
6. A.S. Iyer-Pascuzzi, and P.N. Benfey Transcriptional networks in root cell fate specification Biochim. Biophys. Acta 1789 2009 315 325
7. R. Dello Ioio, K. Nakamura, L. Moubayidin, S. Perilli, M. Taniguchi, M.T. Morita, T. Aoyama, P. Costantino, and S. Sabatini A genetic framework for the control of cell division and differentiation in the root meristem Science 322 2008 1380 1384 (Pubitemid 352775250)
8. D. Reinhardt, E.R. Pesce, P. Stieger, T. Mandel, K. Baltensperger, M. Bennett, J. Traas, J. Friml, and C. Kuhlemeier Regulation of phyllotaxis by polar auxin transport Nature 426 2003 255 260 (Pubitemid 37463138)
9. T. Bennett, and B. Scheres Root development-two meristems for the price of one? Curr. Top. Dev. Biol. 91 2010 67 102
10. H. Niwa Open conformation chromatin and pluripotency Genes Dev. 21 2007 2671 2676 (Pubitemid 350070715)
11. A. Gaspar-Maia, A. Alajem, F. Polesso, R. Sridharan, M.J. Mason, A. Heidersbach, J. Ramalho-Santos, M.T. McManus, K. Plath, E. Meshorer, and M. Ramalho-Santos Chd1 regulates open chromatin and pluripotency of embryonic stem cells Nature 460 2009 863 868
12. J.C. Fletcher Shoot and floral meristem maintenance in Arabidopsis Annu. Rev. Plant Biol. 53 2002 45 66 (Pubitemid 36257487)
13. J.A. Long, E.I. Moan, J.I. Medford, and M.K. Barton A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis Nature 379 1996 66 69 (Pubitemid 26008135)
14. U. Brand, J.C. Fletcher, M. Hobe, E.M. Meyerowitz, and R. Simon Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity Science 289 2000 617 619 (Pubitemid 30622065)
15. J.C. Fletcher, U. Brand, M.P. Running, R. Simon, and E.M. Meyerowitz Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems Science 283 1999 1911 1914
16. K. Endrizzi, B. Moussian, A. Haecker, J.Z. Levin, and T. Laux The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the meristem genes WUSCHEL and ZWILLE Plant J. 10 1996 967 979
17. T. Kirch, R. Simon, M. Grünewald, and W. Werr The DORNROSCHEN/ENHANCER OF SHOOT REGENERATION1 gene of Arabidopsis acts in the control of meristem ccll fate and lateral organ development Plant Cell 15 2003 694 705 (Pubitemid 36339582)
18. A. Hay, and M. Tsiantis A KNOX family TALE Curr. Opin. Plant Biol. 12 2009 593 598
19. R. Sablowski Genes and functions controlled by floral organ identity genes Semin. Cell Dev. Biol. 21 2010 94 99
20. J. Friml, E. Benková, I. Blilou, J. Wisniewska, T. Hamann, K. Ljung, S. Woody, G. Sandberg, B. Scheres, G. Jürgens, and K. Palme AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis Cell 108 2002 661 673 (Pubitemid 34241427)
21. C. Saito, T. Ueda, H. Abe, Y. Wada, T. Kuroiwa, A. Hisada, M. Furuya, and A. Nakano A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis Plant J. 29 2002 245 255 (Pubitemid 34179485)
22. U. Brand, M. Grünewald, M. Hobe, and R. Simon Regulation of CLV3 expression by two homeobox genes in Arabidopsis Plant Physiol. 129 2002 565 575 (Pubitemid 34689145)
23. J.A. Nadeau, and F.D. Sack Control of stomatal distribution on the Arabidopsis leaf surface Science 296 2002 1697 1700 (Pubitemid 34579170)
24. V. Sundaresan Control of seed size in plants Proc. Natl. Acad. Sci. USA 102 2005 17887 17888 (Pubitemid 41798470)
25. M.K. Nowack, P.E. Grini, M.J. Jakoby, M. Lafos, C. Koncz, and A. Schnittger A positive signal from the fertilization of the egg cell sets off endosperm proliferation in angiosperm embryogenesis Nat. Genet. 38 2006 63 67 (Pubitemid 43011883)
26. C. Jeronimo, M.F. Langelier, M. Zeghouf, M. Cojocaru, D. Bergeron, D. Baali, D. Forget, S. Mnaimneh, A.P. Davierwala, and J. Pootoolal RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits Mol. Cell. Biol. 24 2004 7043 7058 (Pubitemid 39014432)
27. R. Anindya, O. Aygün, and J.Q. Svejstrup Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1 Mol. Cell 28 2007 386 397 (Pubitemid 350047546)
28. B.P. Somesh, J. Reid, W.F. Liu, T.M. Søgaard, H. Erdjument-Bromage, P. Tempst, and J.Q. Svejstrup Multiple mechanisms confining RNA polymerase II ubiquitylation to polymerases undergoing transcriptional arrest Cell 121 2005 913 923 (Pubitemid 40806422)
29. H. Nelissen, S. De Groeve, D. Fleury, P. Neyt, L. Bruno, M.B. Bitonti, F. Vandenbussche, D. Van der Straeten, T. Yamaguchi, and H. Tsukaya Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation Proc. Natl. Acad. Sci. USA 107 2010 1678 1683
30. H. Nelissen, D. Fleury, L. Bruno, P. Robles, L. De Veylder, J. Traas, J.L. Micol, M. Van Montagu, D. Inzé, and M. Van Lijsebettens The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth Proc. Natl. Acad. Sci. USA 102 2005 7754 7759 (Pubitemid 40744244)
31. P.M. Donnelly, D. Bonetta, H. Tsukaya, R.E. Dengler, and N.G. Dengler Cell cycling and cell enlargement in developing leaves of Arabidopsis Dev. Biol. 215 1999 407 419
32. E. Truernit, H. Bauby, B. Dubreucq, O. Grandjean, J. Runions, J. Barthélémy, and J.C. Palauqui High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis Plant Cell 20 2008 1494 1503 (Pubitemid 352844159)
33. J.C. Coates, L. Laplaze, and J. Haseloff Armadillo-related proteins promote lateral root development in Arabidopsis Proc. Natl. Acad. Sci. USA 103 2006 1621 1626 (Pubitemid 43191214)
34. B.H. Lee, A. Kapoor, J. Zhu, and J.K. Zhu STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis Plant Cell 18 2006 1736 1749 (Pubitemid 44025556)
35. M. Wildwater, A. Campilho, J.M. Perez-Perez, R. Heidstra, I. Blilou, H. Korthout, J. Chatterjee, L. Mariconti, W. Gruissem, and B. Scheres The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots Cell 123 2005 1337 1349 (Pubitemid 41821789)
36. H. Daub, J.V. Olsen, M. Bairlein, F. Gnad, F.S. Oppermann, R. Körner, Z. Greff, G. Kéri, O. Stemmann, and M. Mann Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle Mol. Cell 31 2008 438 448
37. C. Mehlgarten, D. Jablonowski, U. Wrackmeyer, S. Tschitschmann, D. Sondermann, G. Jäger, Z. Gong, A.S. Byström, R. Schaffrath, and K.D. Breunig Elongator function in tRNA wobble uridine modification is conserved between yeast and plants Mol. Microbiol. 76 2010 1082 1094
38. W. Versées, S. De Groeve, and M. Van Lijsebettens Elongator, a conserved multitasking complex? Mol. Microbiol. 76 2010 1065 1069
39. K.D. Birnbaum, and A. Sánchez Alvarado Slicing across kingdoms: Regeneration in plants and animals Cell 132 2008 697 710 (Pubitemid 351253692)
40. E.M. Meyerowitz Plants compared to animals: The broadest comparative study of development Science 295 2002 1482 1485 (Pubitemid 34173995)
41. K. Hanyu-Nakamura, H. Sonobe-Nojima, A. Tanigawa, P. Lasko, and A. Nakamura Drosophila Pgc protein inhibits P-TEFb recruitment to chromatin in primordial germ cells Nature 451 2008 730 733 (Pubitemid 351220560)
42. F. Zhang, M. Barboric, T.K. Blackwell, and B.M. Peterlin A model of repression: CTD analogs and PIE-1 inhibit transcriptional elongation by P-TEFb Genes Dev. 17 2003 748 758 (Pubitemid 36359193)
43. T. Venkatarama, F. Lai, X. Luo, Y. Zhou, K. Newman, and M.L. King Repression of zygotic gene expression in the Xenopus germline Development 137 2010 651 660
44. J. Zeitlinger, A. Stark, M. Kellis, J.W. Hong, S. Nechaev, K. Adelman, M. Levine, and R.A. Young RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo Nat. Genet. 39 2007 1512 1516 (Pubitemid 350191345)
45. J.E. Malamy, and P.N. Benfey Organization and cell differentiation in lateral roots of Arabidopsis thaliana Development 124 1997 33 44 (Pubitemid 27053004)