메뉴 건너뛰기




Volumn 2011, Issue , 2011, Pages

Discovering the unknown: Improving detection of novel species and genera from short reads

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; GENOME ANALYSIS; HIGH THROUGHPUT SEQUENCING; PERFORMANCE; SENSITIVITY AND SPECIFICITY; ALGORITHM; BACTERIUM; DNA BARCODING; DNA SEQUENCE; GENETICS; GENOME; METAGENOMICS; METHODOLOGY; MINING; NUCLEIC ACID DATABASE; OPEN READING FRAME; RECEIVER OPERATING CHARACTERISTIC; SEWAGE; SPECIES DIFFERENCE;

EID: 79959326732     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2011/495849     Document Type: Article
Times cited : (10)

References (28)
  • 3
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • DOI 10.1101/gr.5969107
    • Huson D. H., Auch A. F., Qi J., Schuster S. C., MEGAN analysis of metagenomic data Genome Research 2007 17 3 377 386 (Pubitemid 46376747)
    • (2007) Genome Research , vol.17 , Issue.3 , pp. 377-386
    • Huson, D.H.1    Auch, A.F.2    Qi, J.3    Schuster, S.C.4
  • 5
    • 69549129476 scopus 로고    scopus 로고
    • The rare biosphere: A reality check
    • Reeder J., Knight R., The rare biosphere: a reality check Nature Methods 2009 6 9 636 637
    • (2009) Nature Methods , vol.6 , Issue.9 , pp. 636-637
    • Reeder, J.1    Knight, R.2
  • 8
    • 69549135124 scopus 로고    scopus 로고
    • Phymm and PhymmBL: Metagenomic phylogenetic classification with interpolated Markov models
    • Brady A., Salzberg S. L., Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models Nature Methods 2009 6 9 673 676
    • (2009) Nature Methods , vol.6 , Issue.9 , pp. 673-676
    • Brady, A.1    Salzberg, S.L.2
  • 9
    • 78650549608 scopus 로고    scopus 로고
    • NBC: The Nave Bayes classification tool webserver for taxonomic classification of metagenomic reads
    • Rosen G. L., Reichenberger E. R., Rosenfeld A. M., NBC: the Nave Bayes classification tool webserver for taxonomic classification of metagenomic reads Bioinformatics 2011 27 1 127 129
    • (2011) Bioinformatics , vol.27 , Issue.1 , pp. 127-129
    • Rosen, G.L.1    Reichenberger, E.R.2    Rosenfeld, A.M.3
  • 11
    • 67649887316 scopus 로고    scopus 로고
    • SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences
    • Haque M. M., Ghosh T. S., Komanduri D., Mande S. S., SOrt-ITEMS: sequence orthology based approach for improved taxonomic estimation of metagenomic sequences Bioinformatics 2009 25 14 1722 1730
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1722-1730
    • Haque, M.M.1    Ghosh, T.S.2    Komanduri, D.3    Mande, S.S.4
  • 12
    • 74049132798 scopus 로고    scopus 로고
    • WebCARMA: A web application for the functional and taxonomic classification of unassembled metagenomic reads
    • Gerlach W., Jnemann S., Tille F., Goesmann A., Stoye J., WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads BMC Bioinformatics 2009 10, article 430
    • (2009) BMC Bioinformatics , vol.1043
    • Gerlach, W.1    Jnemann, S.2    Tille, F.3    Goesmann, A.4    Stoye, J.5
  • 15
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu W., Lomsadze A., Borodovsky M., Ab initio gene identification in metagenomic sequences Nucleic Acids Research 2010 38 12 e132
    • (2010) Nucleic Acids Research , vol.38 , Issue.12 , pp. 132
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3
  • 16
    • 78651266519 scopus 로고    scopus 로고
    • Combining gene prediction methods to improve metagenomic gene annotation
    • Yok N. G., Rosen G. L., Combining gene prediction methods to improve metagenomic gene annotation BMC Bioinformatics 2011 12 1
    • (2011) BMC Bioinformatics , vol.12 , Issue.1
    • Yok, N.G.1    Rosen, G.L.2
  • 20
    • 0036199540 scopus 로고    scopus 로고
    • N-Alkane degradation by Marinobacter hydrocarbonoclasticus strain SP 17: Long chain β-hydroxy acids as indicators of bacterial activity
    • DOI 10.1016/S0146-6380(01)00126-7, PII S0146638001001267
    • Lattuati A., Metzger P., Acquaviva M., Bertrand J. C., Largeau C., n-Alkane degradation by Marinobacter hydrocarbonoclasticus strain SP 17: long chain -hydroxy acids as indicators of bacterial activity Organic Geochemistry 2002 33 1 37 45 (Pubitemid 34212776)
    • (2002) Organic Geochemistry , vol.33 , Issue.1 , pp. 37-45
    • Lattuati, A.1    Metzger, P.2    Acquaviva, M.3    Bertrand, J.-C.4    Largeau, C.5
  • 25
    • 33846840967 scopus 로고    scopus 로고
    • Phenotypic and molecular characterisation of fish-borne Flavobacterium johnsoniae-like isolates from aquaculture systems in South Africa
    • DOI 10.1016/j.resmic.2006.09.001, PII S0923250806002099
    • Flemming L., Rawlings D., Chenia H., Phenotypic and molecular characterisation of fish-borne Flavobacterium johnsoniae-like isolates from aquaculture systems in South Africa Research in Microbiology 2007 158 1 18 30 (Pubitemid 46216772)
    • (2007) Research in Microbiology , vol.158 , Issue.1 , pp. 18-30
    • Flemming, L.1    Rawlings, D.2    Chenia, H.3
  • 27
    • 0842345383 scopus 로고    scopus 로고
    • Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment
    • DOI 10.1099/ijs.0.02636-0
    • Jeon C. O., Park W., Ghiorse W. C., Madsen E. L., Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment International Journal of Systematic and Evolutionary Microbiology 2004 54 1 93 97 (Pubitemid 38181276)
    • (2004) International Journal of Systematic and Evolutionary Microbiology , vol.54 , Issue.1 , pp. 93-97
    • Jeon, C.O.1    Park, W.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 28
    • 33947186216 scopus 로고    scopus 로고
    • Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor
    • DOI 10.1099/ijs.0.64576-0
    • Hoeft S. E., Blum J. S., Stolz J. F., Tabita F. R., Witte B., King G. M., Santini J. M., Oremland R. S., Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor International Journal of Systematic and Evolutionary Microbiology 2007 57 3 504 512 (Pubitemid 46437862)
    • (2007) International Journal of Systematic and Evolutionary Microbiology , vol.57 , Issue.3 , pp. 504-512
    • Hoeft, S.E.1    Blum, J.S.2    Stolz, J.F.3    Tabita, F.R.4    Witte, B.5    King, G.M.6    Santini, J.M.7    Oremland, R.S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.